MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 88142 bp
Accession: NZ_CP090588 Location: 4272109..4360250 Organism: Pectobacterium aroidearum strain AK042 Replicon: chromosome
Accession: NZ_CP090588 Location: 4272109..4360250 Organism: Pectobacterium aroidearum strain AK042 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0Y25_RS19260 (L0Y25_19235) | 4267832..4269133 | + | 1302 | WP_180777427.1 | anaerobic C4-dicarboxylate transporter | - |
| L0Y25_RS19265 (L0Y25_19240) | 4269265..4269597 | + | 333 | WP_012773213.1 | divalent cation tolerance protein CutA | - |
| L0Y25_RS19270 (L0Y25_19245) | 4269573..4271303 | + | 1731 | WP_181847072.1 | protein-disulfide reductase DsbD | - |
| L0Y25_RS19275 (L0Y25_19250) | 4271347..4271922 | + | 576 | WP_119871152.1 | transcriptional regulator | - |
| L0Y25_RS19285 (L0Y25_19260) | 4272358..4273332 | - | 975 | WP_256542375.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| L0Y25_RS19290 (L0Y25_19265) | 4273373..4274830 | - | 1458 | WP_256542376.1 | TraI domain-containing protein | - |
| L0Y25_RS19295 (L0Y25_19270) | 4275023..4275658 | + | 636 | WP_256542377.1 | hypothetical protein | - |
| L0Y25_RS19300 (L0Y25_19275) | 4275747..4276745 | + | 999 | WP_256542378.1 | hypothetical protein | - |
| L0Y25_RS19305 (L0Y25_19280) | 4276889..4278088 | + | 1200 | WP_256542379.1 | conjugal transfer protein TraF | - |
| L0Y25_RS19310 (L0Y25_19285) | 4278555..4281071 | - | 2517 | WP_256542380.1 | S8 family peptidase | - |
| L0Y25_RS19315 (L0Y25_19290) | 4281088..4282092 | - | 1005 | WP_256542381.1 | ATP-binding protein | - |
| L0Y25_RS19320 (L0Y25_19295) | 4282157..4282711 | - | 555 | WP_256542382.1 | Tn3 family transposase TnBth3 | Transposase |
| L0Y25_RS19325 (L0Y25_19300) | 4283217..4284143 | - | 927 | WP_256542383.1 | hypothetical protein | - |
| L0Y25_RS19330 (L0Y25_19305) | 4284216..4285106 | - | 891 | WP_256542384.1 | hypothetical protein | - |
| L0Y25_RS19335 (L0Y25_19310) | 4285180..4287141 | - | 1962 | WP_256542385.1 | ArdC-like ssDNA-binding domain-containing protein | - |
| L0Y25_RS19340 (L0Y25_19315) | 4287206..4287691 | - | 486 | WP_256542386.1 | hypothetical protein | - |
| L0Y25_RS19345 (L0Y25_19320) | 4287761..4288033 | - | 273 | WP_256542387.1 | hypothetical protein | - |
| L0Y25_RS19350 (L0Y25_19325) | 4288030..4288467 | - | 438 | WP_256542388.1 | hypothetical protein | - |
| L0Y25_RS19355 (L0Y25_19330) | 4288485..4288700 | - | 216 | WP_103160255.1 | hypothetical protein | - |
| L0Y25_RS19360 (L0Y25_19335) | 4288777..4289253 | - | 477 | WP_103160254.1 | DNA repair protein RadC | - |
| L0Y25_RS19365 (L0Y25_19340) | 4289359..4289829 | - | 471 | WP_103160253.1 | hypothetical protein | - |
| L0Y25_RS19370 (L0Y25_19345) | 4289921..4290436 | - | 516 | WP_256542389.1 | hypothetical protein | - |
| L0Y25_RS19375 (L0Y25_19350) | 4290518..4290868 | - | 351 | WP_256542390.1 | hypothetical protein | - |
| L0Y25_RS19380 (L0Y25_19355) | 4291432..4292319 | - | 888 | WP_256542391.1 | hypothetical protein ; Integrase | Integrase |
| L0Y25_RS19385 (L0Y25_19360) | 4293242..4294084 | + | 843 | WP_256542392.1 | hypothetical protein | - |
| L0Y25_RS19390 (L0Y25_19365) | 4294235..4294957 | - | 723 | WP_256542393.1 | hypothetical protein ; Integrase | Integrase |
| L0Y25_RS19395 (L0Y25_19370) | 4295061..4295354 | + | 294 | WP_256542394.1 | hypothetical protein | - |
| L0Y25_RS19400 (L0Y25_19375) | 4295399..4296955 | - | 1557 | WP_256542395.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| L0Y25_RS19405 (L0Y25_19380) | 4296965..4297309 | - | 345 | WP_256542396.1 | hypothetical protein | - |
| L0Y25_RS19410 (L0Y25_19385) | 4297312..4298739 | - | 1428 | WP_256542397.1 | integrating conjugative element protein | - |
| L0Y25_RS19415 (L0Y25_19390) | 4298755..4299723 | - | 969 | WP_256542398.1 | TIGR03756 family integrating conjugative element protein | - |
| L0Y25_RS19420 (L0Y25_19395) | 4299720..4300115 | - | 396 | WP_256542399.1 | TIGR03757 family integrating conjugative element protein | - |
| L0Y25_RS19425 (L0Y25_19400) | 4300542..4300790 | + | 249 | WP_256542400.1 | hypothetical protein | - |
| L0Y25_RS19430 (L0Y25_19405) | 4300878..4303247 | - | 2370 | WP_256542401.1 | ATP-binding protein | - |
| L0Y25_RS19435 (L0Y25_19410) | 4303436..4303663 | + | 228 | WP_012822424.1 | hypothetical protein | - |
| L0Y25_RS19440 (L0Y25_19415) | 4303660..4304562 | - | 903 | WP_256542402.1 | hypothetical protein | - |
| L0Y25_RS19445 (L0Y25_19420) | 4304732..4305130 | - | 399 | WP_256542403.1 | hypothetical protein | - |
| L0Y25_RS19450 (L0Y25_19425) | 4305127..4307952 | - | 2826 | WP_256542404.1 | conjugative transfer ATPase | - |
| L0Y25_RS19455 (L0Y25_19430) | 4307952..4308362 | - | 411 | WP_102118355.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| L0Y25_RS19460 (L0Y25_19435) | 4308355..4308816 | - | 462 | WP_012822419.1 | hypothetical protein | - |
| L0Y25_RS19465 (L0Y25_19440) | 4308803..4309606 | - | 804 | WP_256542405.1 | hypothetical protein | - |
| L0Y25_RS19470 (L0Y25_19445) | 4309609..4311150 | - | 1542 | WP_256542406.1 | TIGR03752 family integrating conjugative element protein | - |
| L0Y25_RS19475 (L0Y25_19450) | 4311147..4312043 | - | 897 | WP_256542407.1 | TIGR03749 family integrating conjugative element protein | - |
| L0Y25_RS19480 (L0Y25_19455) | 4312040..4312699 | - | 660 | WP_012822415.1 | TIGR03746 family integrating conjugative element protein | - |
| L0Y25_RS19485 (L0Y25_19460) | 4312696..4313070 | - | 375 | WP_256542408.1 | TIGR03750 family conjugal transfer protein | - |
| L0Y25_RS19490 (L0Y25_19465) | 4313082..4313441 | - | 360 | WP_256542409.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| L0Y25_RS19495 (L0Y25_19470) | 4313470..4313706 | - | 237 | WP_048256370.1 | TIGR03758 family integrating conjugative element protein | - |
| L0Y25_RS19500 (L0Y25_19475) | 4313703..4314011 | - | 309 | WP_256542410.1 | RAQPRD family integrative conjugative element protein | - |
| L0Y25_RS19505 (L0Y25_19480) | 4314293..4314817 | - | 525 | WP_256543447.1 | NADAR family protein | - |
| L0Y25_RS19510 (L0Y25_19485) | 4314901..4315965 | - | 1065 | WP_256542411.1 | hypothetical protein | - |
| L0Y25_RS19515 (L0Y25_19490) | 4316023..4316460 | - | 438 | WP_256542412.1 | DUF6530 family protein | - |
| L0Y25_RS19520 (L0Y25_19495) | 4316543..4316773 | - | 231 | Protein_3817 | Tn3 family transposase ISEc63 | Transposase |
| L0Y25_RS19525 (L0Y25_19500) | 4316942..4317508 | + | 567 | WP_256543448.1 | Tn3 family transposase TnpR_Tn3 | Transposase |
| L0Y25_RS19530 (L0Y25_19505) | 4317536..4318243 | + | 708 | WP_256542413.1 | major royal jelly family protein | - |
| L0Y25_RS19535 (L0Y25_19510) | 4318284..4318898 | - | 615 | WP_256542414.1 | TIR domain-containing protein | - |
| L0Y25_RS19540 (L0Y25_19515) | 4319067..4319834 | + | 768 | WP_256542415.1 | hypothetical protein | VF |
| L0Y25_RS19545 (L0Y25_19520) | 4319989..4320384 | + | 396 | Protein_3822 | DUF4158 domain-containing protein | - |
| L0Y25_RS19550 (L0Y25_19525) | 4320430..4320819 | - | 390 | WP_256542416.1 | hypothetical protein | - |
| L0Y25_RS19555 (L0Y25_19530) | 4320851..4321597 | - | 747 | WP_256542417.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| L0Y25_RS19560 (L0Y25_19535) | 4321597..4323708 | - | 2112 | WP_256542418.1 | type IV conjugative transfer system coupling protein TraD | - |
| L0Y25_RS19565 (L0Y25_19540) | 4323701..4324117 | - | 417 | WP_256542419.1 | hypothetical protein | - |
| L0Y25_RS19570 (L0Y25_19545) | 4324132..4324683 | - | 552 | WP_256542420.1 | integrating conjugative element protein | - |
| L0Y25_RS19575 (L0Y25_19550) | 4324680..4325330 | - | 651 | WP_256542421.1 | hypothetical protein | VF |
| L0Y25_RS19580 (L0Y25_19555) | 4325309..4326016 | - | 708 | WP_256542422.1 | TIGR03759 family integrating conjugative element protein | - |
| L0Y25_RS19585 (L0Y25_19560) | 4326025..4326828 | - | 804 | WP_256542423.1 | hypothetical protein | - |
| L0Y25_RS19590 (L0Y25_19565) | 4326937..4328436 | - | 1500 | WP_256542424.1 | hypothetical protein | VF |
| L0Y25_RS19595 (L0Y25_19570) | 4328444..4329103 | - | 660 | WP_256542425.1 | hypothetical protein | VF |
| L0Y25_RS19600 (L0Y25_19575) | 4329100..4329564 | - | 465 | WP_256543449.1 | hypothetical protein | VF |
| L0Y25_RS19605 (L0Y25_19580) | 4329608..4330192 | - | 585 | WP_256543450.1 | hypothetical protein | VF |
| L0Y25_RS19610 (L0Y25_19585) | 4330208..4331296 | - | 1089 | WP_256542426.1 | Type II secretion system protein F | VF |
| L0Y25_RS19615 (L0Y25_19590) | 4331289..4332848 | - | 1560 | WP_256542427.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| L0Y25_RS19620 (L0Y25_19595) | 4332880..4333380 | - | 501 | WP_256542428.1 | hypothetical protein | VF |
| L0Y25_RS19625 (L0Y25_19600) | 4333367..4334662 | - | 1296 | WP_256542429.1 | hypothetical protein | VF |
| L0Y25_RS19630 (L0Y25_19605) | 4334666..4336399 | - | 1734 | WP_256542430.1 | Outer membrane lipoprotein BfpB | VF |
| L0Y25_RS19635 (L0Y25_19610) | 4336409..4336846 | - | 438 | WP_103160204.1 | hypothetical protein | VF |
| L0Y25_RS19640 (L0Y25_19615) | 4336848..4338152 | - | 1305 | WP_256542431.1 | hypothetical protein | VF |
| L0Y25_RS19645 (L0Y25_19620) | 4338309..4338746 | - | 438 | WP_256542432.1 | DUF29 domain-containing protein | - |
| L0Y25_RS19650 (L0Y25_19625) | 4338833..4339381 | - | 549 | WP_256542433.1 | single-stranded DNA-binding protein | - |
| L0Y25_RS19655 (L0Y25_19630) | 4339441..4339950 | - | 510 | WP_256542434.1 | STY4534 family ICE replication protein | - |
| L0Y25_RS19660 (L0Y25_19635) | 4340586..4342595 | - | 2010 | WP_256542435.1 | DNA topoisomerase III | - |
| L0Y25_RS19665 (L0Y25_19640) | 4342610..4343362 | - | 753 | WP_256542436.1 | TIGR03761 family integrating conjugative element protein | - |
| L0Y25_RS19670 (L0Y25_19645) | 4343634..4344938 | - | 1305 | WP_256543451.1 | STY4528 family pathogenicity island replication protein | - |
| L0Y25_RS19675 (L0Y25_19650) | 4345180..4345377 | - | 198 | WP_012822373.1 | hypothetical protein | - |
| L0Y25_RS19680 (L0Y25_19655) | 4345374..4345604 | - | 231 | WP_224653819.1 | hypothetical protein | - |
| L0Y25_RS19685 (L0Y25_19660) | 4345606..4346187 | - | 582 | WP_012822371.1 | DUF2857 domain-containing protein | - |
| L0Y25_RS19690 (L0Y25_19665) | 4346293..4346958 | - | 666 | WP_256542437.1 | DUF2786 domain-containing protein | - |
| L0Y25_RS19695 (L0Y25_19670) | 4346955..4347194 | - | 240 | WP_256542438.1 | TraR/DksA C4-type zinc finger protein | - |
| L0Y25_RS19700 (L0Y25_19675) | 4347184..4348914 | - | 1731 | WP_256542439.1 | ParB family protein | - |
| L0Y25_RS19705 (L0Y25_19680) | 4348914..4350269 | - | 1356 | WP_256542440.1 | SPI-7-type island replicative DNA helicase | - |
| L0Y25_RS19710 (L0Y25_19685) | 4350262..4350651 | - | 390 | WP_256542441.1 | hypothetical protein | - |
| L0Y25_RS19715 (L0Y25_19690) | 4350648..4351535 | - | 888 | WP_256542442.1 | Tyrosine-protein kinase CpsD | VF |
| L0Y25_RS19720 (L0Y25_19695) | 4351825..4353084 | + | 1260 | WP_256553863.1 | Prophage integrase IntS ; Integrase | Integrase |
| L0Y25_RS19725 (L0Y25_19700) | 4353299..4354303 | - | 1005 | WP_256553864.1 | 5'-nucleotidase | - |
| L0Y25_RS19730 (L0Y25_19705) | 4354515..4354706 | - | 192 | WP_116165064.1 | YlcI/YnfO family protein | - |
| L0Y25_RS19735 (L0Y25_19710) | 4354892..4355233 | + | 342 | WP_256553865.1 | hypothetical protein | - |
| L0Y25_RS19740 (L0Y25_19715) | 4355687..4356037 | - | 351 | WP_256553866.1 | hypothetical protein | - |
| L0Y25_RS19745 (L0Y25_19720) | 4356135..4356878 | + | 744 | WP_256553867.1 | MobC family replication-relaxation protein | - |
| L0Y25_RS19750 (L0Y25_19725) | 4356937..4357155 | + | 219 | WP_015855076.1 | type II toxin-antitoxin system antitoxin CcdA | - |
| L0Y25_RS19755 (L0Y25_19730) | 4357158..4357325 | + | 168 | Protein_3864 | CcdB family protein | - |
| L0Y25_RS19760 (L0Y25_19735) | 4357632..4358624 | + | 993 | WP_256553868.1 | GAF domain-containing protein | - |
| L0Y25_RS19765 (L0Y25_19740) | 4358753..4358977 | + | 225 | WP_256553869.1 | hypothetical protein | - |
| L0Y25_RS19770 (L0Y25_19745) | 4359214..4359702 | - | 489 | WP_256553870.1 | GNAT family N-acetyltransferase | Toxin Detail |
| L0Y25_RS19775 (L0Y25_19750) | 4359699..4359992 | - | 294 | WP_256553871.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| L0Y25_RS19780 (L0Y25_19755) | 4360333..4360575 | - | 243 | WP_226294582.1 | helix-turn-helix transcriptional regulator | - |
| L0Y25_RS19785 (L0Y25_19760) | 4360696..4360956 | + | 261 | WP_181847074.1 | helix-turn-helix transcriptional regulator | - |
| L0Y25_RS19790 (L0Y25_19765) | 4361336..4362199 | + | 864 | WP_181847075.1 | hypothetical protein | - |
| L0Y25_RS19795 (L0Y25_19770) | 4362183..4362605 | + | 423 | WP_181847076.1 | hypothetical protein | - |
| L0Y25_RS19800 (L0Y25_19775) | 4362987..4363247 | + | 261 | WP_094433671.1 | helix-turn-helix transcriptional regulator | - |
| L0Y25_RS19805 (L0Y25_19780) | 4363326..4364228 | - | 903 | WP_181847077.1 | LysR family transcriptional regulator | - |
| L0Y25_RS19810 (L0Y25_19785) | 4364357..4364620 | + | 264 | WP_012773200.1 | DUF2798 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|