MGE detailed information
MGE type: Prophage MGE length: 43794 bp
Accession: NZ_CP090568 Location: 2734406..2778199 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2036 Replicon: chromosome
Accession: NZ_CP090568 Location: 2734406..2778199 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2036 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPY96_RS12375 (LPY96_12385) | 2729514..2729789 | + | 276 | WP_005916089.1 | PQ-loop domain-containing transporter | - |
| LPY96_RS12380 (LPY96_12390) | 2729826..2730818 | - | 993 | WP_005916091.1 | exodeoxyribonuclease III | - |
| LPY96_RS12385 (LPY96_12395) | 2730966..2731202 | + | 237 | Protein_2288 | DUF1264 domain-containing protein | - |
| LPY96_RS12390 (LPY96_12400) | 2731452..2734334 | + | 2883 | WP_095702081.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY96_RS12395 (LPY96_12405) | 2734406..2735299 | - | 894 | Protein_2290 | IS3 family transposase ISXac3 | Transposase |
| LPY96_RS12405 (LPY96_12415) | 2736573..2737544 | - | 972 | WP_095702082.1 | IS1595 family transposase IS1595 | Transposase |
| LPY96_RS12410 (LPY96_12420) | 2737935..2740439 | + | 2505 | WP_005918046.1 | type III secretion system effector protein XopC | - |
| LPY96_RS12415 (LPY96_12425) | 2740875..2741075 | - | 201 | Protein_2294 | avirulence protein | - |
| LPY96_RS12420 (LPY96_12430) | 2741144..2742246 | + | 1103 | WP_269338448.1 | IS3 family transposase IS1389 | Transposase |
| LPY96_RS12425 (LPY96_12435) | 2742280..2743158 | - | 879 | Protein_2296 | XopE/AvrPphe family type III secretion system effector | - |
| LPY96_RS12430 (LPY96_12445) | 2743292..2743588 | - | 297 | Protein_2297 | integrase | - |
| LPY96_RS12435 (LPY96_12450) | 2743645..2743959 | + | 315 | WP_033836454.1 | IS3 family transposase ISKpn40 | Transposase |
| LPY96_RS12440 (LPY96_12455) | 2743959..2744777 | + | 819 | WP_269338450.1 | IS3 family transposase ISKpn40 | Transposase |
| LPY96_RS12445 (LPY96_12460) | 2744805..2745216 | - | 412 | Protein_2300 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| LPY96_RS12450 (LPY96_12465) | 2745593..2746633 | + | 1041 | WP_033474620.1 | IS21 family transposase ISRme20 | Transposase |
| LPY96_RS12455 (LPY96_12470) | 2746633..2747433 | + | 801 | WP_017154874.1 | IS21 family transposase ISRme20 | Transposase |
| LPY96_RS12460 (LPY96_12475) | 2747500..2747661 | + | 162 | WP_232514322.1 | hypothetical protein | - |
| LPY96_RS12465 (LPY96_12480) | 2747655..2747927 | + | 273 | WP_005918020.1 | IS66 family transposase ISAzo15 | Transposase |
| LPY96_RS12470 (LPY96_12485) | 2748116..2748316 | + | 201 | WP_005934416.1 | IS66 family transposase ISAzo15 | Transposase |
| LPY96_RS12475 (LPY96_12490) | 2748437..2749069 | - | 633 | WP_197974735.1 | XopAF/AvrXv3 family type III secretion system effector | - |
| LPY96_RS12480 (LPY96_12495) | 2749412..2750467 | - | 1056 | WP_033836455.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| LPY96_RS12485 (LPY96_12500) | 2750651..2751925 | + | 1275 | WP_269338309.1 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| LPY96_RS12490 (LPY96_12505) | 2751934..2754930 | + | 2997 | WP_269338455.1 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| LPY96_RS12495 (LPY96_12510) | 2754978..2755325 | - | 348 | Protein_2310 | hypothetical protein | - |
| LPY96_RS12505 (LPY96_12520) | 2757149..2758375 | - | 1227 | WP_269338458.1 | replication protein RepA | - |
| LPY96_RS12510 (LPY96_12525) | 2758655..2759842 | - | 1188 | WP_269338460.1 | zeta toxin family protein | - |
| LPY96_RS12515 (LPY96_12530) | 2759849..2760112 | - | 264 | WP_005917846.1 | hypothetical protein | - |
| LPY96_RS12520 (LPY96_12535) | 2760137..2760526 | - | 390 | WP_223301037.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LPY96_RS12525 (LPY96_12540) | 2760535..2760795 | - | 261 | WP_005917852.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| LPY96_RS12530 (LPY96_12545) | 2761145..2764429 | + | 3285 | WP_095702083.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY96_RS12535 (LPY96_12550) | 2764614..2765468 | - | 855 | WP_269338461.1 | putative addiction module antidote protein | - |
| LPY96_RS12540 (LPY96_12555) | 2765465..2766052 | - | 588 | WP_033836498.1 | phosphoribosyltransferase family protein | - |
| LPY96_RS12545 (LPY96_12560) | 2766291..2766941 | + | 651 | WP_269338462.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LPY96_RS12550 (LPY96_12565) | 2767211..2768080 | + | 870 | WP_033836500.1 | site-specific DNA-methyltransferase | - |
| LPY96_RS12555 (LPY96_12570) | 2768077..2769078 | + | 1002 | WP_269338464.1 | XcyI family restriction endonuclease | - |
| LPY96_RS12560 (LPY96_12575) | 2769573..2769917 | + | 345 | WP_033836502.1 | AAA family ATPase | - |
| LPY96_RS12570 (LPY96_12585) | 2771123..2772967 | + | 1845 | WP_053329466.1 | AAA family ATPase | - |
| LPY96_RS12575 (LPY96_12590) | 2774057..2774514 | + | 458 | Protein_2326 | hypothetical protein | - |
| LPY96_RS12580 (LPY96_12595) | 2774511..2775374 | + | 864 | WP_033836504.1 | hypothetical protein | - |
| LPY96_RS12585 (LPY96_12600) | 2775385..2775960 | + | 576 | WP_154138536.1 | hypothetical protein | - |
| LPY96_RS12590 (LPY96_12605) | 2776997..2778199 | + | 1203 | WP_005918035.1 | DNA cytosine methyltransferase | - |
| LPY96_RS12595 (LPY96_12610) | 2778199..2779101 | + | 903 | WP_033455135.1 | NotI family restriction endonuclease | - |
| LPY96_RS12600 (LPY96_12615) | 2779118..2779309 | - | 192 | WP_005918028.1 | antitoxin VbhA family protein | - |
| LPY96_RS12605 (LPY96_12620) | 2779322..2779498 | - | 177 | WP_154138535.1 | hypothetical protein | - |
| LPY96_RS12610 (LPY96_12625) | 2780017..2780607 | + | 591 | WP_269341077.1 | XopAF/AvrXv3 family type III secretion system effector | - |
| LPY96_RS12615 (LPY96_12630) | 2780728..2780928 | - | 201 | WP_005934416.1 | transposase | - |
| LPY96_RS12620 (LPY96_12635) | 2781117..2781389 | - | 273 | WP_005918020.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| LPY96_RS12625 (LPY96_12640) | 2781851..2782555 | + | 705 | Protein_2336 | transposase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|