MGE detailed information
MGE type: Genomic_island MGE length: 18649 bp
Accession: NZ_CP090568 Location: 207042..225690 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2036 Replicon: chromosome
Accession: NZ_CP090568 Location: 207042..225690 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2036 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPY96_RS01565 (LPY96_01560) | 202056..205238 | - | 3183 | WP_095702033.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY96_RS01570 (LPY96_01565) | 205496..206002 | - | 507 | Protein_171 | hypothetical protein | - |
| LPY96_RS01575 (LPY96_01570) | 206001..206333 | + | 333 | WP_078566249.1 | hypothetical protein | - |
| LPY96_RS01580 (LPY96_01575) | 206520..206909 | - | 390 | WP_078566250.1 | hypothetical protein | - |
| LPY96_RS01585 (LPY96_01580) | 207042..207275 | - | 234 | WP_269339647.1 | hypothetical protein | - |
| LPY96_RS01590 (LPY96_01585) | 207566..207856 | + | 291 | WP_003490957.1 | hypothetical protein | - |
| LPY96_RS01595 (LPY96_01590) | 207877..208254 | + | 378 | WP_078566251.1 | TrbC/VirB2 family protein | - |
| LPY96_RS01600 (LPY96_01595) | 208251..208550 | + | 300 | WP_269339648.1 | VirB3 family type IV secretion system protein | - |
| LPY96_RS01605 (LPY96_01600) | 208573..211206 | + | 2634 | Protein_178 | Type IV secretion system protein virB4 | VF |
| LPY96_RS01610 (LPY96_01605) | 211203..211871 | + | 669 | WP_269339649.1 | type IV secretion system protein | - |
| LPY96_RS01615 (LPY96_01610) | 211919..212131 | + | 213 | WP_005931790.1 | hypothetical protein | - |
| LPY96_RS01620 (LPY96_01615) | 212124..212504 | + | 381 | WP_269339650.1 | hypothetical protein | - |
| LPY96_RS01625 (LPY96_01620) | 212506..213372 | + | 867 | WP_078566252.1 | type IV secretion system protein | - |
| LPY96_RS01630 (LPY96_01625) | 213369..214043 | + | 675 | WP_003490888.1 | type IV secretion system protein | - |
| LPY96_RS01635 (LPY96_01630) | 214068..214850 | + | 783 | WP_017157765.1 | Type IV secretion system protein virB9 | VF |
| LPY96_RS01640 (LPY96_01635) | 214852..216072 | + | 1221 | WP_269339651.1 | Type IV secretion system protein virB10 | VF |
| LPY96_RS01645 (LPY96_01640) | 216083..217105 | + | 1023 | WP_269339652.1 | Type IV secretion system protein VirB11 | VF |
| LPY96_RS01650 (LPY96_01645) | 217116..217985 | + | 870 | WP_078566255.1 | Type IV secretion system protein virB1 | VF |
| LPY96_RS01655 (LPY96_01650) | 218111..218530 | + | 420 | WP_078566256.1 | hypothetical protein | - |
| LPY96_RS01660 (LPY96_01655) | 218607..218993 | + | 387 | WP_003491149.1 | hypothetical protein | - |
| LPY96_RS01665 (LPY96_01660) | 219185..219355 | + | 171 | WP_017157755.1 | antitoxin MazE family protein | Antitoxin Detail |
| LPY96_RS01670 (LPY96_01665) | 219352..219678 | + | 327 | WP_003491151.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| LPY96_RS01675 (LPY96_01670) | 219747..222725 | - | 2979 | WP_269339653.1 | MobF family relaxase | - |
| LPY96_RS01680 (LPY96_01675) | 222739..224313 | - | 1575 | WP_269339654.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LPY96_RS01685 (LPY96_01680) | 224317..224490 | - | 174 | Protein_194 | hypothetical protein | - |
| LPY96_RS01690 (LPY96_01685) | 224490..224885 | - | 396 | WP_269339655.1 | conjugal transfer protein TraA | - |
| LPY96_RS01695 (LPY96_01690) | 225244..225690 | + | 447 | WP_017160486.1 | hypothetical protein | - |
| LPY96_RS01700 (LPY96_01695) | 225699..226394 | + | 696 | WP_269339656.1 | StbB family protein | - |
| LPY96_RS01705 (LPY96_01700) | 226442..226795 | + | 354 | WP_269339657.1 | hypothetical protein | - |
| LPY96_RS01710 (LPY96_01705) | 226933..227214 | - | 282 | WP_017158383.1 | type II toxin-antitoxin system YafQ family toxin | - |
| LPY96_RS01715 (LPY96_01710) | 227201..227470 | - | 270 | WP_017158384.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| LPY96_RS01720 (LPY96_01715) | 227579..228541 | - | 963 | WP_007968792.1 | recombinase family protein | - |
| LPY96_RS01725 (LPY96_01720) | 228811..228979 | - | 169 | Protein_202 | KfrA protein | - |
| LPY96_RS01730 (LPY96_01725) | 229093..229374 | - | 282 | WP_269339658.1 | CopG family transcriptional regulator | - |
| LPY96_RS01735 (LPY96_01730) | 229398..230048 | - | 651 | WP_223304348.1 | AAA family ATPase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|