MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 86622 bp
Accession: NZ_CP090565 Location: 1..86622 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2012 Replicon: plasmid pCFBP2012-87
Accession: NZ_CP090565 Location: 1..86622 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2012 Replicon: plasmid pCFBP2012-87
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPY95_RS22170 (LPY95_22195) | 1..627 | + | 627 | WP_005918230.1 | Chromosome-partitioning ATPase Soj | VF |
| LPY95_RS22175 (LPY95_22200) | 624..947 | + | 324 | WP_005918229.1 | hypothetical protein | - |
| LPY95_RS22180 (LPY95_22205) | 1092..1406 | + | 315 | WP_005918227.1 | ParC family partition-associated protein | - |
| LPY95_RS22185 (LPY95_22210) | 1654..2901 | + | 1248 | WP_269338333.1 | replication initiation protein | - |
| LPY95_RS22195 (LPY95_22220) | 4492..5717 | + | 1226 | WP_269357797.1 | IS3 family transposase ISJsp1 | Transposase |
| LPY95_RS22200 (LPY95_22225) | 5759..6148 | + | 390 | Protein_6 | TAL effector repeat-containing protein | - |
| LPY95_RS22205 (LPY95_22230) | 6419..10423 | + | 4005 | WP_269360348.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY95_RS22210 (LPY95_22235) | 10549..10734 | + | 186 | WP_033837725.1 | hypothetical protein | - |
| LPY95_RS22215 (LPY95_22240) | 10888..11517 | + | 630 | WP_269360350.1 | ParA family partition ATPase | - |
| LPY95_RS22220 (LPY95_22245) | 11530..11745 | + | 216 | WP_005918372.1 | plasmid partition protein ParG | - |
| LPY95_RS22225 (LPY95_22250) | 11762..12568 | + | 807 | WP_005918374.1 | hypothetical protein | - |
| LPY95_RS22230 (LPY95_22255) | 12584..12790 | + | 207 | WP_078566330.1 | antitoxin VbhA family protein | - |
| LPY95_RS22235 (LPY95_22260) | 12838..13389 | - | 552 | WP_269360353.1 | Tn3 family transposase ISPsy42 | Transposase |
| LPY95_RS22240 (LPY95_22265) | 13609..14064 | + | 456 | WP_269360368.1 | hypothetical protein | - |
| LPY95_RS22245 (LPY95_22270) | 14085..14393 | + | 309 | WP_005918382.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LPY95_RS22250 (LPY95_22275) | 14438..14671 | + | 234 | WP_269357807.1 | hypothetical protein | - |
| LPY95_RS22255 (LPY95_22280) | 14873..18673 | + | 3801 | WP_089504555.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY95_RS22260 (LPY95_22285) | 18808..19359 | - | 552 | Protein_18 | IS3 family transposase ISXac2 | Transposase |
| LPY95_RS22270 (LPY95_22295) | 20663..21484 | - | 822 | WP_269360370.1 | hypothetical protein | - |
| LPY95_RS22275 (LPY95_22300) | 21995..22384 | - | 390 | WP_269360355.1 | hypothetical protein | - |
| LPY95_RS22280 (LPY95_22305) | 22593..23267 | + | 675 | WP_017113468.1 | NYN domain-containing protein | - |
| LPY95_RS22285 (LPY95_22310) | 23320..23859 | - | 540 | WP_078565982.1 | plasmid pRiA4b ORF-3 family protein | - |
| LPY95_RS22290 (LPY95_22315) | 23907..24188 | - | 282 | Protein_24 | hypothetical protein | - |
| LPY95_RS22300 (LPY95_22325) | 25490..25627 | - | 138 | WP_223304355.1 | hypothetical protein | - |
| LPY95_RS22305 (LPY95_22335) | 26505..29999 | - | 3495 | WP_269360357.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY95_RS22310 (LPY95_22340) | 30543..31364 | + | 822 | WP_269338341.1 | hypothetical protein | - |
| LPY95_RS22315 (LPY95_22345) | 32094..32444 | - | 351 | WP_078565904.1 | hypothetical protein | - |
| LPY95_RS22320 (LPY95_22350) | 32437..33069 | - | 633 | WP_269360360.1 | ParA family protein | - |
| LPY95_RS22325 (LPY95_22355) | 33296..33451 | - | 156 | Protein_31 | cytosine methyltransferase | - |
| LPY95_RS22330 (LPY95_22360) | 33539..33775 | + | 237 | Protein_32 | KfrA protein | - |
| LPY95_RS22335 (LPY95_22365) | 33894..34523 | + | 630 | WP_269360361.1 | ParA family partition ATPase | - |
| LPY95_RS22340 (LPY95_22370) | 34520..34756 | + | 237 | WP_078565910.1 | plasmid partition protein ParG | - |
| LPY95_RS22345 (LPY95_22375) | 35163..35516 | - | 354 | WP_269338344.1 | hypothetical protein | - |
| LPY95_RS22350 (LPY95_22380) | 35565..36272 | - | 708 | WP_005931741.1 | StbB family protein | - |
| LPY95_RS22355 (LPY95_22385) | 36269..36715 | - | 447 | WP_033480397.1 | hypothetical protein | - |
| LPY95_RS22360 (LPY95_22390) | 37065..37460 | + | 396 | WP_269338345.1 | conjugal transfer protein TraA | - |
| LPY95_RS22365 (LPY95_22395) | 37556..37825 | + | 270 | WP_003490597.1 | hypothetical protein | - |
| LPY95_RS22370 (LPY95_22400) | 37822..38115 | + | 294 | WP_269338346.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LPY95_RS22380 (LPY95_22410) | 39596..39796 | + | 201 | Protein_42 | IS3 family transposase IS1389-B | Transposase |
| LPY95_RS22385 (LPY95_22415) | 39858..41014 | + | 1157 | WP_269360364.1 | IS3 family transposase ISXc8 | Transposase |
| LPY95_RS22390 (LPY95_22420) | 41194..44790 | - | 3597 | WP_269360366.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY95_RS22395 (LPY95_22425) | 45007..45627 | + | 621 | WP_269360372.1 | hypothetical protein | - |
| LPY95_RS22400 (LPY95_22430) | 45631..46167 | + | 537 | WP_033482042.1 | hypothetical protein | - |
| LPY95_RS22405 (LPY95_22435) | 46308..47882 | + | 1575 | WP_269360331.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LPY95_RS22410 (LPY95_22440) | 47896..50880 | + | 2985 | Protein_48 | Multifunctional conjugation protein TraI | Relaxase |
| LPY95_RS22415 (LPY95_22445) | 51170..51454 | + | 285 | WP_003490829.1 | hypothetical protein | - |
| LPY95_RS22420 (LPY95_22450) | 51640..52053 | - | 414 | Protein_50 | hypothetical protein | - |
| LPY95_RS22430 (LPY95_22460) | 53544..53780 | - | 237 | WP_015463816.1 | plasmid partition protein ParG | - |
| LPY95_RS22435 (LPY95_22465) | 53777..54406 | - | 630 | WP_269360333.1 | ParA family partition ATPase | - |
| LPY95_RS22440 (LPY95_22470) | 54526..55206 | - | 681 | WP_269360335.1 | DNA-binding protein | - |
| LPY95_RS22445 (LPY95_22475) | 55258..56345 | + | 1088 | WP_269338307.1 | IS3 family transposase ISXac2 | Transposase |
| LPY95_RS22450 (LPY95_22480) | 56734..57789 | - | 1056 | WP_033836455.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| LPY95_RS22455 (LPY95_22485) | 57973..59247 | + | 1275 | WP_005923972.1 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| LPY95_RS22460 (LPY95_22490) | 59256..62252 | + | 2997 | WP_269360337.1 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| LPY95_RS22465 (LPY95_22495) | 62300..62647 | - | 348 | Protein_59 | hypothetical protein | - |
| LPY95_RS22475 (LPY95_22505) | 64471..65697 | - | 1227 | WP_269360339.1 | replication protein RepA | - |
| LPY95_RS22480 (LPY95_22510) | 65977..67164 | - | 1188 | WP_269360341.1 | zeta toxin family protein | - |
| LPY95_RS22485 (LPY95_22515) | 67171..67434 | - | 264 | WP_005917846.1 | hypothetical protein | - |
| LPY95_RS22490 (LPY95_22520) | 67459..67860 | - | 402 | WP_011053002.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LPY95_RS22495 (LPY95_22525) | 67857..68117 | - | 261 | WP_005917852.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| LPY95_RS22500 (LPY95_22530) | 68467..72060 | + | 3594 | WP_095702115.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY95_RS22505 (LPY95_22535) | 72841..75924 | + | 3084 | WP_269360343.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY95_RS22510 (LPY95_22540) | 76035..76424 | + | 390 | Protein_68 | avirulence protein | - |
| LPY95_RS22515 (LPY95_22545) | 76557..77834 | - | 1278 | WP_005918469.1 | lytic murein transglycosylase | - |
| LPY95_RS22520 (LPY95_22550) | 77967..79526 | - | 1560 | Protein_70 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| LPY95_RS22525 (LPY95_22555) | 79696..80237 | + | 542 | Protein_71 | IS3 family transposase ISXac2 | Transposase |
| LPY95_RS22530 (LPY95_22560) | 80278..81201 | - | 924 | WP_191108110.1 | Tn3 family transposase TnpR_ISXc4 | Transposase |
| LPY95_RS22535 (LPY95_22565) | 81409..81648 | + | 240 | WP_005934467.1 | ribbon-helix-helix domain-containing protein | - |
| LPY95_RS22540 (LPY95_22570) | 81648..82067 | + | 420 | WP_269338329.1 | putative toxin-antitoxin system toxin component, PIN family | - |
| LPY95_RS22545 (LPY95_22575) | 82072..85047 | + | 2976 | WP_269360346.1 | Tn3 family transposase TnpA_ISXc4 | Transposase |
| LPY95_RS22550 (LPY95_22580) | 85066..85764 | + | 699 | WP_033836401.1 | YecA family protein | - |
| LPY95_RS22555 (LPY95_22585) | 85808..85990 | + | 183 | Protein_77 | IS3 family transposase ISXac2 | Transposase |
| LPY95_RS22560 (LPY95_22590) | 86058..86174 | + | 117 | Protein_78 | abortive infection family protein | - |
| LPY95_RS22565 (LPY95_22595) | 86317..86454 | - | 138 | WP_005918231.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|