MGE detailed information
MGE type: Genomic_island MGE length: 44140 bp
Accession: NZ_CP090564 Location: 2662134..2706273 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2012 Replicon: chromosome
Accession: NZ_CP090564 Location: 2662134..2706273 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2012 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPY95_RS11255 (LPY95_11260) | 2657563..2658534 | - | 972 | WP_095702082.1 | IS1595-like element IS1595 family transposase | - |
| LPY95_RS11260 (LPY95_11265) | 2658925..2661429 | + | 2505 | WP_005918046.1 | type III secretion system effector protein XopC | - |
| LPY95_RS11265 (LPY95_11270) | 2661865..2662065 | - | 201 | Protein_2204 | avirulence protein | - |
| LPY95_RS11270 (LPY95_11275) | 2662134..2663236 | + | 1103 | WP_089504518.1 | IS3 family transposase IS1389 | Transposase |
| LPY95_RS11275 (LPY95_11280) | 2663270..2664148 | - | 879 | Protein_2206 | XopE/AvrPphe family type III secretion system effector | - |
| LPY95_RS11280 (LPY95_11290) | 2664282..2664578 | - | 297 | Protein_2207 | integrase | - |
| LPY95_RS11285 (LPY95_11295) | 2664635..2664949 | + | 315 | WP_033836454.1 | IS3 family transposase ISKpn40 | Transposase |
| LPY95_RS11290 (LPY95_11300) | 2664949..2665767 | + | 819 | WP_162998389.1 | IS3 family transposase ISKpn40 | Transposase |
| LPY95_RS11295 (LPY95_11305) | 2665795..2666206 | - | 412 | Protein_2210 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| LPY95_RS11300 (LPY95_11310) | 2666583..2667623 | + | 1041 | WP_033474620.1 | IS21 family transposase ISRme20 | Transposase |
| LPY95_RS11305 (LPY95_11315) | 2667623..2668423 | + | 801 | WP_017154874.1 | IS21 family transposase ISRme20 | Transposase |
| LPY95_RS11310 (LPY95_11320) | 2668490..2668651 | + | 162 | WP_232514322.1 | hypothetical protein | - |
| LPY95_RS11315 (LPY95_11325) | 2668645..2668917 | + | 273 | WP_005918020.1 | IS66 family transposase ISAzo15 | Transposase |
| LPY95_RS11320 (LPY95_11330) | 2669106..2669306 | + | 201 | WP_005934416.1 | IS66 family transposase ISAzo15 | Transposase |
| LPY95_RS11325 (LPY95_11335) | 2669427..2670059 | - | 633 | WP_197974735.1 | XopAF/AvrXv3 family type III secretion system effector | - |
| LPY95_RS11330 (LPY95_11340) | 2670402..2671457 | - | 1056 | WP_033836455.1 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| LPY95_RS11335 (LPY95_11345) | 2671641..2672915 | + | 1275 | WP_005923972.1 | Tn3 family transposase tnpS_TnXax1 | Transposase |
| LPY95_RS11340 (LPY95_11350) | 2672924..2675920 | + | 2997 | WP_078566280.1 | Tn3 family transposase TnpA_TnXax1 | Transposase |
| LPY95_RS11345 (LPY95_11355) | 2675968..2676315 | - | 348 | Protein_2220 | hypothetical protein | - |
| LPY95_RS11355 (LPY95_11365) | 2678139..2679365 | - | 1227 | WP_269358111.1 | replication protein RepA | - |
| LPY95_RS11360 (LPY95_11370) | 2679645..2680832 | - | 1188 | WP_269358112.1 | zeta toxin family protein | - |
| LPY95_RS11365 (LPY95_11375) | 2680839..2681102 | - | 264 | WP_005917846.1 | hypothetical protein | - |
| LPY95_RS11370 (LPY95_11380) | 2681127..2681516 | - | 390 | WP_223301037.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LPY95_RS11375 (LPY95_11385) | 2681525..2681785 | - | 261 | WP_005917852.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin Detail |
| LPY95_RS11380 (LPY95_11390) | 2682135..2685419 | + | 3285 | WP_095702083.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LPY95_RS11385 (LPY95_11395) | 2685604..2686455 | - | 852 | WP_033837071.1 | putative addiction module antidote protein | - |
| LPY95_RS11390 (LPY95_11400) | 2686455..2686988 | - | 534 | WP_269358113.1 | phosphoribosyltransferase family protein | - |
| LPY95_RS11395 (LPY95_11405) | 2686906..2688281 | - | 1376 | Protein_2230 | IS5 family transposase ISXca5 | Transposase |
| LPY95_RS11400 (LPY95_11410) | 2688397..2688561 | - | 165 | WP_269358114.1 | hypothetical protein | - |
| LPY95_RS11405 (LPY95_11415) | 2688800..2689450 | + | 651 | WP_269358115.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LPY95_RS11410 (LPY95_11420) | 2689720..2690589 | + | 870 | WP_033836500.1 | site-specific DNA-methyltransferase | - |
| LPY95_RS11415 (LPY95_11425) | 2690586..2691587 | + | 1002 | WP_269355257.1 | XcyI family restriction endonuclease | - |
| LPY95_RS11420 (LPY95_11430) | 2692082..2692426 | + | 345 | WP_033836502.1 | AAA family ATPase | - |
| LPY95_RS11430 (LPY95_11440) | 2693632..2695476 | + | 1845 | WP_053329466.1 | AAA family ATPase | - |
| LPY95_RS11435 (LPY95_11445) | 2696566..2697023 | + | 458 | Protein_2238 | hypothetical protein | - |
| LPY95_RS11440 (LPY95_11450) | 2697020..2697883 | + | 864 | WP_033836504.1 | hypothetical protein | - |
| LPY95_RS11445 (LPY95_11455) | 2697894..2698469 | + | 576 | WP_154138536.1 | hypothetical protein | - |
| LPY95_RS11450 (LPY95_11460) | 2699506..2700708 | + | 1203 | WP_005918035.1 | DNA cytosine methyltransferase | - |
| LPY95_RS11455 (LPY95_11465) | 2700708..2701610 | + | 903 | WP_033455135.1 | NotI family restriction endonuclease | - |
| LPY95_RS11460 (LPY95_11470) | 2701627..2701818 | - | 192 | WP_005918028.1 | antitoxin VbhA family protein | - |
| LPY95_RS11465 (LPY95_11475) | 2701831..2702007 | - | 177 | WP_154138535.1 | hypothetical protein | - |
| LPY95_RS11470 (LPY95_11480) | 2702526..2703116 | + | 591 | WP_269341077.1 | XopAF/AvrXv3 family type III secretion system effector | - |
| LPY95_RS11475 (LPY95_11485) | 2703237..2703437 | - | 201 | WP_005934416.1 | IS66 family transposase ISAzo15 | Transposase |
| LPY95_RS11480 (LPY95_11490) | 2703626..2703898 | - | 273 | WP_005918020.1 | IS66 family transposase ISDpr4 | Transposase |
| LPY95_RS11485 (LPY95_11495) | 2704360..2705063 | + | 704 | Protein_2248 | Tn3 family transposase tnpT_TnXax1 | Transposase |
| LPY95_RS11490 (LPY95_11500) | 2705197..2706273 | + | 1077 | WP_269358117.1 | XopE/AvrPphe family type III secretion system effector | - |
| LPY95_RS11495 (LPY95_11505) | 2706569..2707105 | + | 537 | Protein_2250 | DUF1264 domain-containing protein | - |
| LPY95_RS11500 (LPY95_11510) | 2707300..2708469 | - | 1170 | WP_005914488.1 | zinc-dependent alcohol dehydrogenase | - |
| LPY95_RS11505 (LPY95_11515) | 2708483..2709013 | - | 531 | WP_005914487.1 | hypothetical protein | - |
| LPY95_RS11510 (LPY95_11520) | 2709017..2709589 | - | 573 | WP_005914486.1 | DUF4142 domain-containing protein | - |
| LPY95_RS11515 (LPY95_11525) | 2709969..2710184 | - | 216 | WP_269358119.1 | hypothetical protein | - |
| LPY95_RS11520 (LPY95_11530) | 2710267..2710725 | - | 459 | Protein_2255 | TonB-dependent receptor | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|