MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 51962 bp
Accession: NZ_CP090562 Location: 1..51962 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2530 Replicon: plasmid pCFBP2530-52
Accession: NZ_CP090562 Location: 1..51962 Organism: Xanthomonas citri pv. malvacearum strain CFBP 2530 Replicon: plasmid pCFBP2530-52
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LGM68_RS22625 (LGM68_22645) | 152..991 | - | 840 | WP_269357752.1 | hypothetical protein | - |
| LGM68_RS22630 (LGM68_22650) | 1056..1322 | - | 267 | WP_019238162.1 | VirB3 family type IV secretion system protein | - |
| LGM68_RS22635 (LGM68_22655) | 1324..1644 | - | 321 | WP_033483076.1 | TrbC/VirB2 family protein | - |
| LGM68_RS22640 (LGM68_22660) | 1717..2720 | - | 1004 | Protein_4 | ATPase, T2SS/T4P/T4SS family | - |
| LGM68_RS22645 (LGM68_22665) | 2805..3014 | - | 210 | WP_173426675.1 | helix-turn-helix transcriptional regulator | - |
| LGM68_RS22650 (LGM68_22670) | 3738..4559 | - | 822 | WP_269357759.1 | hypothetical protein | - |
| LGM68_RS22655 (LGM68_22675) | 5076..5465 | - | 390 | WP_078566345.1 | hypothetical protein | - |
| LGM68_RS22660 (LGM68_22680) | 5761..6300 | - | 540 | WP_078566353.1 | plasmid pRiA4b ORF-3 family protein | - |
| LGM68_RS22665 (LGM68_22685) | 6348..6840 | - | 493 | Protein_9 | hypothetical protein | - |
| LGM68_RS22670 | 6837..6959 | - | 123 | WP_269357761.1 | hypothetical protein | - |
| LGM68_RS22675 (LGM68_22690) | 7000..8895 | - | 1896 | WP_269357763.1 | IncP-type conjugal transfer protein TraG | - |
| LGM68_RS22680 (LGM68_22695) | 8899..11853 | - | 2955 | WP_234802411.1 | DUF3363 domain-containing protein | - |
| LGM68_RS22685 (LGM68_22700) | 12153..12731 | - | 579 | WP_269357766.1 | lytic transglycosylase domain-containing protein | - |
| LGM68_RS22690 (LGM68_22705) | 12740..13333 | - | 594 | WP_269357783.1 | S26 family signal peptidase | - |
| LGM68_RS22695 (LGM68_22710) | 13355..13801 | - | 447 | Protein_15 | DUF2840 domain-containing protein | - |
| LGM68_RS22700 (LGM68_22715) | 14074..14409 | - | 336 | WP_017164077.1 | hypothetical protein | - |
| LGM68_RS22705 (LGM68_22720) | 14406..15041 | - | 636 | WP_269357769.1 | ParA family partition ATPase | - |
| LGM68_RS22710 (LGM68_22725) | 15165..15302 | - | 138 | Protein_18 | KfrA protein | - |
| LGM68_RS22715 (LGM68_22730) | 16186..17010 | - | 825 | Protein_19 | hypothetical protein | - |
| LGM68_RS22720 (LGM68_22735) | 17388..17732 | - | 345 | WP_269357771.1 | hypothetical protein | - |
| LGM68_RS22725 (LGM68_22740) | 17729..18148 | - | 420 | WP_269357773.1 | hypothetical protein | - |
| LGM68_RS22730 (LGM68_22745) | 18570..21854 | + | 3285 | WP_269357775.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LGM68_RS22735 (LGM68_22750) | 21984..22307 | - | 324 | WP_011052979.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| LGM68_RS22740 (LGM68_22755) | 22345..23432 | - | 1088 | Protein_24 | IS3-like element ISXac2 family transposase | - |
| LGM68_RS22745 (LGM68_22760) | 23611..24444 | - | 834 | Protein_25 | Avirulence protein AvrBs3 | - |
| LGM68_RS22750 (LGM68_22765) | 24556..27837 | - | 3282 | WP_269357779.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LGM68_RS22755 (LGM68_22770) | 28049..28267 | - | 219 | WP_269357708.1 | ribbon-helix-helix domain-containing protein | - |
| LGM68_RS22760 (LGM68_22775) | 28475..29398 | + | 924 | Protein_28 | recombinase family protein | - |
| LGM68_RS22765 (LGM68_22780) | 29535..29786 | + | 252 | WP_002804328.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| LGM68_RS22770 (LGM68_22785) | 29783..30178 | + | 396 | WP_009602864.1 | type II toxin-antitoxin system VapC family toxin | - |
| LGM68_RS22775 (LGM68_22790) | 30227..30772 | + | 546 | WP_078566283.1 | hypothetical protein | - |
| LGM68_RS22780 (LGM68_22795) | 31081..34158 | + | 3078 | WP_269357717.1 | type III secretion system effector avirulence protein AvrBs3 | - |
| LGM68_RS22785 (LGM68_22800) | 34273..34855 | - | 583 | Protein_33 | DUF4158 domain-containing protein | - |
| LGM68_RS22790 (LGM68_22805) | 34839..35442 | - | 604 | Protein_34 | recombinase family protein | - |
| LGM68_RS22795 (LGM68_22810) | 35648..35905 | + | 258 | WP_078565928.1 | antitoxin | Antitoxin Detail |
| LGM68_RS22800 (LGM68_22815) | 35905..36237 | + | 333 | WP_078565930.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| LGM68_RS22805 | 36514..36642 | + | 129 | WP_269357720.1 | hypothetical protein | - |
| LGM68_RS22810 (LGM68_22820) | 36717..37253 | + | 537 | WP_078565934.1 | plasmid pRiA4b ORF-3 family protein | - |
| LGM68_RS22815 (LGM68_22825) | 37987..38727 | - | 741 | WP_269357723.1 | hypothetical protein | - |
| LGM68_RS22820 (LGM68_22830) | 38919..39185 | - | 267 | WP_131830052.1 | hypothetical protein | - |
| LGM68_RS22825 (LGM68_22835) | 39670..40662 | - | 993 | WP_269357725.1 | hypothetical protein | - |
| LGM68_RS22830 (LGM68_22840) | 40665..40844 | - | 180 | WP_269357727.1 | hypothetical protein | - |
| LGM68_RS22835 (LGM68_22845) | 40928..43351 | - | 2424 | WP_269357729.1 | DNA topoisomerase | - |
| LGM68_RS22840 (LGM68_22850) | 43424..43663 | - | 240 | WP_075242584.1 | hypothetical protein | - |
| LGM68_RS22845 (LGM68_22855) | 43674..43982 | - | 309 | WP_008575014.1 | hypothetical protein | - |
| LGM68_RS22850 (LGM68_22860) | 44053..45051 | - | 999 | WP_269357732.1 | TrbI/VirB10 family protein | - |
| LGM68_RS22855 (LGM68_22865) | 45147..45332 | + | 186 | WP_269357734.1 | hypothetical protein | - |
| LGM68_RS22860 (LGM68_22870) | 45422..46414 | - | 993 | WP_078565948.1 | P-type conjugative transfer protein TrbG | - |
| LGM68_RS22865 (LGM68_22875) | 46428..47150 | - | 723 | WP_269357738.1 | conjugal transfer protein TrbF | - |
| LGM68_RS22870 (LGM68_22880) | 47157..48416 | - | 1260 | WP_269357740.1 | type IV secretion system protein | - |
| LGM68_RS22875 (LGM68_22885) | 48395..48637 | - | 243 | WP_269357742.1 | hypothetical protein | - |
| LGM68_RS22880 (LGM68_22890) | 48855..49208 | - | 354 | WP_126955075.1 | hypothetical protein | - |
| LGM68_RS22885 (LGM68_22895) | 49205..49582 | - | 378 | WP_126965071.1 | hypothetical protein | - |
| LGM68_RS22890 (LGM68_22900) | 49579..50364 | - | 786 | WP_003490077.1 | conjugal transfer protein | - |
| LGM68_RS22895 (LGM68_22905) | 50383..50904 | - | 522 | WP_269357748.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|