MGE detailed information
MGE type: Conjugative plasmid MGE length: 87994 bp
Accession: NZ_CP090404 Location: 1..87994 Organism: Shigella sp. PIB Replicon: plasmid pPIB-2
Accession: NZ_CP090404 Location: 1..87994 Organism: Shigella sp. PIB Replicon: plasmid pPIB-2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXH19_RS22935 (LXH19_22930) | 1008..1634 | - | 627 | WP_013307883.1 | prepilin peptidase | - |
| LXH19_RS22940 (LXH19_22935) | 1650..2135 | - | 486 | WP_001080767.1 | hypothetical protein | VF |
| LXH19_RS22945 (LXH19_22940) | 2180..2716 | - | 537 | WP_000111521.1 | hypothetical protein | VF |
| LXH19_RS22950 (LXH19_22945) | 2778..3872 | - | 1095 | WP_000697154.1 | Toxin coregulated pilus biosynthesis protein E | VF |
| LXH19_RS22955 (LXH19_22950) | 3874..5382 | - | 1509 | WP_000880806.1 | Toxin coregulated pilus biosynthesis protein T | VF |
| LXH19_RS22960 (LXH19_22955) | 5485..5943 | - | 459 | WP_000095887.1 | hypothetical protein | VF |
| LXH19_RS22965 (LXH19_22960) | 5933..7228 | - | 1296 | WP_000129883.1 | type 4b pilus protein PilO2 | - |
| LXH19_RS22970 (LXH19_22965) | 7249..8868 | - | 1620 | WP_001035562.1 | Outer membrane lipoprotein BfpB | VF |
| LXH19_RS22975 (LXH19_22970) | 8900..9337 | - | 438 | WP_000539952.1 | hypothetical protein | VF |
| LXH19_RS22980 (LXH19_22975) | 9341..10411 | - | 1071 | WP_000730430.1 | hypothetical protein | VF |
| LXH19_RS22985 (LXH19_22980) | 10652..10972 | - | 321 | WP_001447108.1 | hypothetical protein | - |
| LXH19_RS22990 (LXH19_22985) | 11088..11330 | - | 243 | WP_021515452.1 | PilI type IV pilus biogenesis protein | - |
| LXH19_RS22995 (LXH19_22990) | 11411..11554 | - | 144 | WP_000176500.1 | hypothetical protein | - |
| LXH19_RS23000 (LXH19_22995) | 11821..12483 | - | 663 | WP_005082527.1 | hypothetical protein | - |
| LXH19_RS23005 (LXH19_23000) | 12623..13129 | - | 507 | WP_005082529.1 | transcription termination/antitermination NusG family protein | - |
| LXH19_RS23010 (LXH19_23005) | 13967..14839 | + | 873 | WP_000729438.1 | incFII family plasmid replication initiator RepA | - |
| LXH19_RS23015 (LXH19_23010) | 15534..15692 | + | 159 | WP_032151498.1 | hypothetical protein | - |
| LXH19_RS23020 (LXH19_23015) | 15747..16016 | + | 270 | WP_000079928.1 | type II toxin-antitoxin system antitoxin YacA | Antitoxin Detail |
| LXH19_RS23025 (LXH19_23020) | 16016..16294 | + | 279 | WP_001384452.1 | type II toxin-antitoxin system toxin YacB | Toxin Detail |
| LXH19_RS23030 (LXH19_23025) | 16808..17425 | - | 618 | WP_025750220.1 | ProQ/FINO family protein | - |
| LXH19_RS23035 (LXH19_23030) | 17734..18430 | - | 697 | Protein_21 | IS1 family transposase | - |
| LXH19_RS23040 (LXH19_23035) | 18664..19983 | - | 1320 | WP_160470889.1 | cation:dicarboxylase symporter family transporter | - |
| LXH19_RS23045 (LXH19_23040) | 20195..20891 | + | 697 | Protein_23 | IS1 family transposase | - |
| LXH19_RS23050 (LXH19_23045) | 20911..21681 | + | 771 | WP_086586318.1 | tyrosine-type recombinase/integrase | - |
| LXH19_RS23055 (LXH19_23050) | 22265..22897 | + | 633 | WP_000312331.1 | ParA family protein | - |
| LXH19_RS23060 (LXH19_23055) | 22897..23271 | + | 375 | WP_000752652.1 | hypothetical protein | - |
| LXH19_RS23065 (LXH19_23060) | 23509..24483 | + | 975 | WP_025749785.1 | plasmid segregation protein ParM | - |
| LXH19_RS23070 (LXH19_23065) | 24487..24879 | + | 393 | WP_000272884.1 | plasmid partitioning/stability family protein | - |
| LXH19_RS23075 (LXH19_23070) | 25560..26462 | + | 903 | WP_001739825.1 | DUF1281 domain-containing protein | - |
| LXH19_RS23080 (LXH19_23075) | 26459..26770 | + | 312 | WP_031942433.1 | hypothetical protein | - |
| LXH19_RS23085 (LXH19_23080) | 26846..27529 | + | 684 | WP_000086147.1 | DNA methylase | - |
| LXH19_RS23090 (LXH19_23085) | 27530..27751 | + | 222 | WP_001104893.1 | hypothetical protein | - |
| LXH19_RS23095 (LXH19_23090) | 27681..28199 | + | 519 | WP_227649461.1 | DUF1380 family protein | - |
| LXH19_RS23100 (LXH19_23095) | 28244..29014 | + | 771 | WP_001584932.1 | hypothetical protein | - |
| LXH19_RS23105 (LXH19_23100) | 29428..29853 | + | 426 | WP_001198875.1 | antirestriction protein | - |
| LXH19_RS23110 (LXH19_23105) | 29900..30322 | + | 423 | WP_000271732.1 | DUF1380 family protein | - |
| LXH19_RS23115 (LXH19_23110) | 30319..30510 | + | 192 | WP_001024836.1 | hypothetical protein | - |
| LXH19_RS23120 (LXH19_23115) | 30843..30911 | - | 69 | Protein_38 | pilus protein | - |
| LXH19_RS23125 (LXH19_23120) | 31280..31807 | + | 528 | WP_001276120.1 | single-stranded DNA-binding protein | - |
| LXH19_RS23130 (LXH19_23125) | 31865..32098 | + | 234 | WP_000006020.1 | DUF905 domain-containing protein | - |
| LXH19_RS23135 (LXH19_23130) | 32157..34115 | + | 1959 | WP_025749133.1 | ParB/RepB/Spo0J family partition protein | - |
| LXH19_RS23140 (LXH19_23135) | 34170..34604 | + | 435 | WP_025749130.1 | conjugation system SOS inhibitor PsiB | - |
| LXH19_RS23145 (LXH19_23140) | 34601..35320 | + | 720 | WP_025749128.1 | plasmid SOS inhibition protein A | - |
| LXH19_RS23150 (LXH19_23145) | 35317..35913 | + | 597 | WP_000977998.1 | hypothetical protein | - |
| LXH19_RS23155 (LXH19_23150) | 36374..36874 | + | 501 | WP_014065718.1 | antirestriction protein ArdA | - |
| LXH19_RS23160 (LXH19_23155) | 37605..38039 | + | 435 | WP_000218862.1 | hypothetical protein | - |
| LXH19_RS23165 (LXH19_23160) | 38132..38398 | + | 267 | WP_001247860.1 | hypothetical protein | - |
| LXH19_RS23170 (LXH19_23165) | 38575..38964 | + | 390 | WP_000833767.1 | hypothetical protein | - |
| LXH19_RS23175 (LXH19_23170) | 38961..39851 | + | 891 | WP_000038343.1 | Recombination-promoting nuclease RpnA | VF |
| LXH19_RS23180 (LXH19_23175) | 39851..40096 | + | 246 | WP_001260882.1 | hypothetical protein | - |
| LXH19_RS23185 (LXH19_23180) | 40127..40378 | - | 252 | WP_000148286.1 | helix-turn-helix transcriptional regulator | - |
| LXH19_RS23190 (LXH19_23185) | 40958..41806 | + | 849 | WP_013307867.1 | DUF4942 domain-containing protein | - |
| LXH19_RS23195 (LXH19_23190) | 41892..42227 | - | 336 | WP_000157090.1 | hypothetical protein | - |
| LXH19_RS23200 (LXH19_23195) | 42460..42792 | + | 333 | WP_001291057.1 | plasmid mobilization protein MobA | - |
| LXH19_RS23205 (LXH19_23200) | 42804..45524 | + | 2721 | WP_000991405.1 | Protein TraI | Relaxase |
| LXH19_RS23210 (LXH19_23205) | 45745..48045 | - | 2301 | WP_013307869.1 | F-type conjugative transfer protein TrbC | - |
| LXH19_RS23215 (LXH19_23210) | 48026..49150 | - | 1125 | WP_000152382.1 | DsbC family protein | - |
| LXH19_RS23220 (LXH19_23215) | 49147..50400 | - | 1254 | WP_001028763.1 | IncI1-type conjugal transfer protein TrbA | - |
| LXH19_RS23225 (LXH19_23220) | 51077..51328 | + | 252 | WP_001081067.1 | DinQ-like type I toxin DqlB | - |
| LXH19_RS23230 (LXH19_23225) | 51391..51567 | - | 177 | WP_001054907.1 | hypothetical protein | - |
| LXH19_RS23235 (LXH19_23230) | 51717..52184 | - | 468 | WP_000598962.1 | thermonuclease family protein | - |
| LXH19_RS23240 (LXH19_23235) | 52343..52966 | + | 624 | WP_001155247.1 | helix-turn-helix domain-containing protein | - |
| LXH19_RS23245 (LXH19_23240) | 53164..53379 | - | 216 | WP_000266543.1 | hypothetical protein | - |
| LXH19_RS23250 (LXH19_23245) | 53383..53751 | - | 369 | WP_001345852.1 | hypothetical protein | - |
| LXH19_RS23255 (LXH19_23250) | 54042..54284 | - | 243 | WP_000650923.1 | hypothetical protein | - |
| LXH19_RS23260 (LXH19_23255) | 54614..54766 | + | 153 | WP_001302699.1 | Hok/Gef family protein | - |
| LXH19_RS23265 (LXH19_23260) | 54904..56490 | - | 1587 | WP_000004564.1 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| LXH19_RS23270 (LXH19_23265) | 56764..57417 | - | 654 | WP_001401768.1 | plasmid IncI1-type surface exclusion protein ExcA | - |
| LXH19_RS23275 (LXH19_23270) | 57505..59670 | - | 2166 | WP_000691808.1 | DotA/TraY family protein | - |
| LXH19_RS23280 (LXH19_23275) | 59745..60314 | - | 570 | WP_000650752.1 | conjugal transfer protein TraX | - |
| LXH19_RS23285 (LXH19_23280) | 60311..61516 | - | 1206 | WP_001189548.1 | conjugal transfer protein TraW | - |
| LXH19_RS23290 (LXH19_23285) | 61474..62094 | - | 621 | WP_000286854.1 | hypothetical protein | - |
| LXH19_RS23295 (LXH19_23290) | 62094..65138 | - | 3045 | WP_013307872.1 | conjugal transfer nucleotide-binding protein | - |
| LXH19_RS23300 (LXH19_23295) | 65433..66251 | - | 819 | WP_000753550.1 | hypothetical protein | - |
| LXH19_RS23305 (LXH19_23300) | 66265..66417 | - | 153 | Protein_75 | TraS | - |
| LXH19_RS23310 (LXH19_23305) | 66474..66872 | - | 399 | WP_000088813.1 | hypothetical protein | - |
| LXH19_RS23315 (LXH19_23310) | 66919..67449 | - | 531 | WP_000987023.1 | conjugal transfer protein TraQ | - |
| LXH19_RS23320 (LXH19_23315) | 67446..68159 | - | 714 | WP_000787003.1 | conjugal transfer protein TraP | - |
| LXH19_RS23325 (LXH19_23320) | 68156..69493 | - | 1338 | WP_013307873.1 | conjugal transfer protein TraO | - |
| LXH19_RS23330 (LXH19_23325) | 69497..70471 | - | 975 | WP_000547383.1 | hypothetical protein | VF |
| LXH19_RS23335 (LXH19_23330) | 70482..71177 | - | 696 | WP_001681668.1 | DotI/IcmL family type IV secretion protein | - |
| LXH19_RS23340 (LXH19_23335) | 71189..71539 | - | 351 | WP_001056367.1 | hypothetical protein | - |
| LXH19_RS23345 (LXH19_23340) | 71556..75617 | - | 4062 | WP_013307874.1 | DUF5710 domain-containing protein | - |
| LXH19_RS23350 (LXH19_23345) | 75971..76552 | - | 582 | WP_025750394.1 | hypothetical protein | - |
| LXH19_RS23355 (LXH19_23350) | 76560..77015 | - | 456 | Protein_85 | IS5 family transposase | - |
| LXH19_RS23360 (LXH19_23355) | 77050..77925 | - | 876 | WP_001617865.1 | Beta-lactamase CTX-M-97 | ARG |
| LXH19_RS23365 (LXH19_23360) | 78175..79437 | - | 1263 | WP_000608644.1 | IS1380 family transposase ISEcp1 | Transposase |
| LXH19_RS23370 (LXH19_23365) | 79849..80139 | - | 291 | WP_000817801.1 | IcmT/TraK family protein | - |
| LXH19_RS23375 (LXH19_23370) | 80136..81284 | - | 1149 | WP_013307876.1 | putative protein YggR | VF |
| LXH19_RS23380 (LXH19_23375) | 81268..82104 | - | 837 | WP_000745049.1 | hypothetical protein | VF |
| LXH19_RS23385 (LXH19_23380) | 82101..82559 | - | 459 | WP_025750398.1 | DotD/TraH family lipoprotein | - |
| LXH19_RS23390 (LXH19_23385) | 82663..83865 | - | 1203 | WP_013307879.1 | conjugal transfer protein TraF | - |
| LXH19_RS23395 (LXH19_23390) | 83967..84788 | - | 822 | WP_001681675.1 | hypothetical protein | - |
| LXH19_RS23400 (LXH19_23395) | 85001..86125 | - | 1125 | WP_013307880.1 | site-specific integrase | - |
| LXH19_RS23405 (LXH19_23400) | 86461..86721 | - | 261 | WP_230139596.1 | pilus assembly protein | - |
| LXH19_RS23410 (LXH19_23405) | 87026..87181 | - | 156 | WP_001358489.1 | hypothetical protein | - |
| LXH19_RS23415 (LXH19_23410) | 87378..87617 | + | 240 | WP_000271302.1 | hypothetical protein | - |
| LXH19_RS23420 (LXH19_23415) | 87622..87918 | - | 297 | WP_001014414.1 | phage tail protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|