MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 48351 bp
Accession: NZ_CP090388 Location: 1..48351 Organism: Vibrio cholerae strain GXFL1-4 Replicon: plasmid unnamed1
Accession: NZ_CP090388 Location: 1..48351 Organism: Vibrio cholerae strain GXFL1-4 Replicon: plasmid unnamed1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LY388_RS19440 (LY388_19440) | 16..441 | + | 426 | WP_234116229.1 | hypothetical protein | - |
| LY388_RS19445 (LY388_19445) | 1031..1336 | + | 306 | WP_002047200.1 | hypothetical protein | - |
| LY388_RS19450 (LY388_19450) | 1386..1655 | + | 270 | WP_002039215.1 | hypothetical protein | - |
| LY388_RS19455 (LY388_19455) | 1665..1964 | + | 300 | WP_002039212.1 | hypothetical protein | - |
| LY388_RS19460 (LY388_19460) | 2125..2664 | + | 540 | WP_234116230.1 | single-stranded DNA-binding protein | - |
| LY388_RS19465 (LY388_19465) | 2764..3042 | + | 279 | WP_002039209.1 | ArdC family protein | - |
| LY388_RS19470 (LY388_19470) | 3086..3352 | + | 267 | WP_042989434.1 | hypothetical protein | - |
| LY388_RS19475 (LY388_19475) | 3342..3728 | + | 387 | WP_234116231.1 | hypothetical protein | - |
| LY388_RS19480 (LY388_19480) | 3804..3971 | + | 168 | WP_002039205.1 | hypothetical protein | - |
| LY388_RS19485 (LY388_19485) | 4104..5399 | + | 1296 | WP_234116232.1 | DUF3560 domain-containing protein | - |
| LY388_RS19490 (LY388_19490) | 5962..6456 | - | 495 | WP_234116233.1 | hypothetical protein | - |
| LY388_RS19495 (LY388_19495) | 6449..7207 | - | 759 | WP_234116234.1 | StbB family protein | - |
| LY388_RS19500 (LY388_19500) | 7219..7839 | - | 621 | WP_234116235.1 | hypothetical protein | - |
| LY388_RS19505 (LY388_19505) | 7987..8331 | + | 345 | WP_032468291.1 | hypothetical protein | Relaxase |
| LY388_RS19510 (LY388_19510) | 8325..12578 | + | 4254 | WP_234116236.1 | hypothetical protein | - |
| LY388_RS19515 (LY388_19515) | 12743..12922 | + | 180 | WP_032468292.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| LY388_RS19520 (LY388_19520) | 12962..13390 | + | 429 | WP_234116237.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| LY388_RS19525 (LY388_19525) | 13395..13574 | + | 180 | WP_234116238.1 | hypothetical protein | - |
| LY388_RS19530 (LY388_19530) | 13588..13791 | + | 204 | WP_148521236.1 | hypothetical protein | - |
| LY388_RS19535 (LY388_19535) | 13795..14019 | + | 225 | WP_148521238.1 | hypothetical protein | - |
| LY388_RS19540 (LY388_19540) | 14023..14184 | + | 162 | WP_175247858.1 | hypothetical protein | - |
| LY388_RS19545 (LY388_19545) | 14353..14580 | + | 228 | WP_148521240.1 | hypothetical protein | - |
| LY388_RS19550 (LY388_19550) | 14594..15070 | + | 477 | WP_148521242.1 | hypothetical protein | - |
| LY388_RS19555 (LY388_19555) | 15057..15275 | + | 219 | WP_234116239.1 | hypothetical protein | - |
| LY388_RS19560 (LY388_19560) | 15286..15471 | + | 186 | WP_234116240.1 | hypothetical protein | - |
| LY388_RS19565 (LY388_19565) | 15485..15757 | + | 273 | WP_234116241.1 | hypothetical protein | - |
| LY388_RS19570 (LY388_19570) | 15774..16124 | + | 351 | WP_234116242.1 | hypothetical protein | - |
| LY388_RS19575 (LY388_19575) | 16109..16474 | + | 366 | WP_234116243.1 | hypothetical protein | - |
| LY388_RS19580 (LY388_19580) | 16815..17354 | - | 540 | WP_042989451.1 | hypothetical protein | - |
| LY388_RS19585 (LY388_19585) | 17364..19145 | - | 1782 | WP_234116244.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LY388_RS19590 (LY388_19590) | 19156..19425 | - | 270 | WP_002039275.1 | hypothetical protein | - |
| LY388_RS19595 (LY388_19595) | 19422..19940 | - | 519 | WP_234116245.1 | Soluble lytic murein transglycosylase | VF |
| LY388_RS19600 (LY388_19600) | 20001..20960 | - | 960 | WP_234116246.1 | trypsin-like serine protease | - |
| LY388_RS19605 (LY388_19605) | 21033..21218 | - | 186 | WP_148535068.1 | hypothetical protein | - |
| LY388_RS19610 (LY388_19610) | 21286..21693 | - | 408 | WP_156838504.1 | hypothetical protein | - |
| LY388_RS19615 (LY388_19615) | 21708..22661 | - | 954 | WP_234116247.1 | type II secretion system protein | - |
| LY388_RS19620 (LY388_19620) | 22671..22937 | - | 267 | WP_234116248.1 | transporter | - |
| LY388_RS19625 (LY388_19625) | 23162..23656 | - | 495 | WP_231794134.1 | type II secretion system protein | - |
| LY388_RS19630 (LY388_19630) | 23667..24683 | - | 1017 | WP_231794133.1 | hypothetical protein | - |
| LY388_RS19635 (LY388_19635) | 24688..26265 | - | 1578 | WP_234116216.1 | Putative type II secretion system protein E | VF |
| LY388_RS19640 (LY388_19640) | 26252..26983 | - | 732 | WP_212725382.1 | hypothetical protein | - |
| LY388_RS19645 (LY388_19645) | 26976..28097 | - | 1122 | WP_234116217.1 | hypothetical protein | - |
| LY388_RS19650 (LY388_19650) | 28110..29546 | - | 1437 | WP_156835865.1 | hypothetical protein | - |
| LY388_RS19655 (LY388_19655) | 29546..30262 | - | 717 | WP_148521260.1 | hypothetical protein | - |
| LY388_RS19660 (LY388_19660) | 30262..30615 | - | 354 | WP_002039258.1 | hypothetical protein | - |
| LY388_RS19665 (LY388_19665) | 30628..31404 | - | 777 | WP_148521261.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LY388_RS19670 (LY388_19670) | 31467..32486 | - | 1020 | WP_234116218.1 | Type IV secretion system protein VirB11 | VF |
| LY388_RS19675 (LY388_19675) | 32479..33696 | - | 1218 | WP_234116219.1 | Type IV secretion system protein virB10 | VF |
| LY388_RS19680 (LY388_19680) | 33689..34441 | - | 753 | WP_002039252.1 | Type IV secretion system protein virB9 | VF |
| LY388_RS19685 (LY388_19685) | 34431..35195 | - | 765 | WP_234116220.1 | Type IV secretion system protein virB8 | VF |
| LY388_RS19690 (LY388_19690) | 35357..36310 | - | 954 | WP_231794124.1 | type IV secretion system protein | - |
| LY388_RS19695 (LY388_19695) | 36387..37052 | - | 666 | WP_234116221.1 | type IV secretion system protein | - |
| LY388_RS19700 (LY388_19700) | 37054..39423 | - | 2370 | WP_234116222.1 | Type IV secretion system protein virB4 | VF |
| LY388_RS19705 (LY388_19705) | 39766..40053 | - | 288 | WP_234116223.1 | conjugal transfer protein | - |
| LY388_RS19710 (LY388_19710) | 40188..40589 | - | 402 | WP_148521201.1 | hypothetical protein | - |
| LY388_RS19715 (LY388_19715) | 41402..41584 | - | 183 | WP_212725380.1 | TraY domain-containing protein | - |
| LY388_RS19720 (LY388_19720) | 41747..42355 | + | 609 | WP_002039238.1 | S24 family peptidase | - |
| LY388_RS19725 (LY388_19725) | 42752..43324 | + | 573 | WP_234116224.1 | helix-turn-helix domain-containing protein | - |
| LY388_RS19730 (LY388_19730) | 44241..44558 | + | 318 | WP_234116225.1 | hypothetical protein | - |
| LY388_RS19735 (LY388_19735) | 44619..46019 | + | 1401 | WP_234116226.1 | DNA sulfur modification protein DndB | - |
| LY388_RS19740 (LY388_19740) | 46160..46378 | + | 219 | WP_148521211.1 | hypothetical protein | VF |
| LY388_RS19745 (LY388_19745) | 46447..46680 | + | 234 | WP_148521213.1 | hypothetical protein | - |
| LY388_RS19750 (LY388_19750) | 46740..47156 | + | 417 | WP_148521215.1 | hypothetical protein | - |
| LY388_RS19755 (LY388_19755) | 47159..47368 | + | 210 | WP_234116227.1 | hypothetical protein | - |
| LY388_RS19760 (LY388_19760) | 47384..47707 | + | 324 | WP_234116228.1 | hypothetical protein | - |
| LY388_RS19765 (LY388_19765) | 47856..48002 | + | 147 | WP_212725407.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|