MGE detailed information
MGE type: Genomic_island MGE length: 44842 bp
Accession: NZ_CP090378 Location: 960837..1005678 Organism: Vibrio cholerae strain BY369 Replicon: chromosome
Accession: NZ_CP090378 Location: 960837..1005678 Organism: Vibrio cholerae strain BY369 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LVJ30_RS04475 (LVJ30_04480) | 957211..957894 | - | 684 | WP_000841479.1 | VC0807 family protein | - |
| LVJ30_RS04480 (LVJ30_04485) | 958117..959796 | + | 1680 | WP_001139117.1 | SWIM zinc finger domain-containing protein | - |
| LVJ30_RS04485 (LVJ30_04490) | 959994..960503 | + | 510 | WP_001077909.1 | hypothetical protein | - |
| LVJ30_RS04490 (LVJ30_04495) | 960837..961541 | - | 705 | WP_001880605.1 | nuclease-related domain-containing protein | - |
| LVJ30_RS04495 (LVJ30_04500) | 961611..964547 | - | 2937 | WP_001283872.1 | DEAD/DEAH box helicase family protein | - |
| LVJ30_RS04500 (LVJ30_04505) | 964551..965129 | - | 579 | WP_000109982.1 | class I SAM-dependent methyltransferase | - |
| LVJ30_RS04505 (LVJ30_04510) | 965557..966024 | - | 468 | WP_000804849.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| LVJ30_RS04510 (LVJ30_04515) | 966021..967382 | - | 1362 | WP_000392003.1 | type II toxin-antitoxin system HipA family toxin | Toxin Detail |
| LVJ30_RS04515 (LVJ30_04520) | 967986..968963 | + | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| LVJ30_RS04520 (LVJ30_04525) | 968989..969669 | - | 681 | Protein_837 | IS5 family transposase | - |
| LVJ30_RS04525 (LVJ30_04530) | 970011..971531 | - | 1521 | WP_000640055.1 | aldehyde dehydrogenase family protein | - |
| LVJ30_RS04530 (LVJ30_04535) | 971711..974752 | + | 3042 | WP_001880619.1 | M66 family metalloprotease | - |
| LVJ30_RS04535 (LVJ30_04540) | 974865..979466 | + | 4602 | WP_000482254.1 | membrane protein | - |
| LVJ30_RS04540 (LVJ30_04545) | 979463..980401 | + | 939 | WP_001232137.1 | hypothetical protein | - |
| LVJ30_RS04545 (LVJ30_04550) | 980511..981005 | + | 495 | WP_000218964.1 | thiol peroxidase | - |
| LVJ30_RS04550 (LVJ30_04555) | 981281..983143 | - | 1863 | WP_000591844.1 | toxin-coregulated pilus methyl-accepting chemotaxis protein TcpI | - |
| LVJ30_RS04555 (LVJ30_04560) | 983584..984249 | + | 666 | WP_000542596.1 | toxin-coregulated pilus transcriptional regulator TcpP | - |
| LVJ30_RS04560 (LVJ30_04565) | 984234..984644 | + | 411 | WP_000549073.1 | toxin-coregulated pilus protein TcpH | - |
| LVJ30_RS04565 (LVJ30_04570) | 985188..985862 | + | 675 | WP_025989296.1 | toxin-coregulated pilus major pilin TcpA | - |
| LVJ30_RS04570 (LVJ30_04575) | 985942..987234 | + | 1293 | WP_001234004.1 | toxin-coregulated pilus minor pilin TcpB | - |
| LVJ30_RS04575 (LVJ30_04580) | 987307..987687 | + | 381 | WP_001911314.1 | TcpQ domain-containing protein | - |
| LVJ30_RS04580 (LVJ30_04585) | 987690..989159 | + | 1470 | WP_000750979.1 | toxin-coregulated pilus secretin TcpC | - |
| LVJ30_RS04585 (LVJ30_04590) | 989152..989607 | + | 456 | WP_000200904.1 | toxin-coregulated pilus protein TcpR | - |
| LVJ30_RS04590 (LVJ30_04595) | 989595..990431 | + | 837 | WP_001880631.1 | toxin-coregulated pilus protein TcpD | - |
| LVJ30_RS04595 (LVJ30_04600) | 990447..990905 | + | 459 | WP_001022338.1 | toxin-coregulated pilus protein TcpS | - |
| LVJ30_RS04600 (LVJ30_04605) | 990895..992406 | + | 1512 | WP_096068385.1 | toxin-coregulated pilus assembly ATPase TcpT | - |
| LVJ30_RS04605 (LVJ30_04610) | 992381..993403 | + | 1023 | WP_000691946.1 | toxin-coregulated pilus assembly protein TcpE | - |
| LVJ30_RS04610 (LVJ30_04615) | 993413..994429 | + | 1017 | WP_025989298.1 | colonization factor TcpF | - |
| LVJ30_RS04615 (LVJ30_04620) | 994636..995466 | + | 831 | WP_000579582.1 | pilus/toxin transcriptional regulator ToxT | - |
| LVJ30_RS04620 (LVJ30_04625) | 995466..996227 | + | 762 | WP_000456980.1 | toxin-coregulated pilus pre-pilin peptidase TcpJ | - |
| LVJ30_RS04625 (LVJ30_04630) | 996234..998111 | + | 1878 | Protein_858 | methyl-accepting chemotaxis protein AcfB | - |
| LVJ30_RS04630 (LVJ30_04635) | 998117..998888 | + | 772 | Protein_859 | accessory colonization factor AcfC | - |
| LVJ30_RS04635 (LVJ30_04640) | 998940..999377 | + | 438 | WP_001899524.1 | RDD family protein | - |
| LVJ30_RS04640 (LVJ30_04645) | 999386..1000294 | + | 909 | WP_001880634.1 | M23 family metallopeptidase | - |
| LVJ30_RS04645 (LVJ30_04650) | 1000297..1000944 | - | 648 | WP_001173022.1 | accessory colonization factor AcfA | - |
| LVJ30_RS04650 (LVJ30_04655) | 1001116..1005678 | + | 4563 | WP_000702220.1 | accessory colonization factor AcfD | - |
| LVJ30_RS04655 (LVJ30_04660) | 1007188..1007588 | - | 401 | Protein_864 | transposase | - |
| LVJ30_RS04660 (LVJ30_04665) | 1007593..1008861 | - | 1269 | WP_001107728.1 | integrase domain-containing protein | - |
| LVJ30_RS04670 (LVJ30_04675) | 1009463..1009948 | - | 486 | WP_000162689.1 | SsrA-binding protein SmpB | - |
| LVJ30_RS04675 (LVJ30_04680) | 1010132..1010566 | + | 435 | WP_000815876.1 | type II toxin-antitoxin system RatA family toxin | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|