MGE detailed information
MGE type: Prophage MGE length: 52258 bp
Accession: NZ_CP090196 Location: 2457887..2510144 Organism: Escherichia coli strain YL3 Replicon: chromosome
Accession: NZ_CP090196 Location: 2457887..2510144 Organism: Escherichia coli strain YL3 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LXN07_RS11710 (2455262) | 2455262..2457688 | - | 2427 | WP_001551145.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LXN07_RS11715 (2457887) | 2457887..2458192 | - | 306 | WP_001295396.1 | DUF1161 domain-containing protein | - |
| LXN07_RS11720 (2458300) | 2458300..2459010 | + | 711 | WP_001445899.1 | YnfC family lipoprotein | - |
| LXN07_RS11725 (2459013) | 2459013..2459573 | - | 561 | WP_001138584.1 | spermidine N1-acetyltransferase | - |
| LXN07_RS11730 (2459608) | 2459608..2459949 | - | 342 | WP_000705205.1 | DUF1283 family protein | - |
| LXN07_RS11735 (2460084) | 2460084..2460410 | + | 327 | WP_001314753.1 | YnfA family protein | - |
| LXN07_RS11740 (2460616) | 2460616..2461830 | + | 1215 | WP_257120049.1 | starvation-sensing protein RspA | - |
| LXN07_RS11745 (2461842) | 2461842..2462861 | + | 1020 | WP_000836037.1 | Zn-dependent oxidoreductase | - |
| LXN07_RS11750 (2463049) | 2463049..2464329 | - | 1281 | WP_021523105.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| LXN07_RS11755 (2464364) | 2464364..2464615 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| LXN07_RS11760 (2464688) | 2464688..2467159 | - | 2472 | WP_000048363.1 | exonuclease | - |
| LXN07_RS11765 (2467253) | 2467253..2467444 | - | 192 | WP_001083276.1 | lysis protein YdfD | - |
| LXN07_RS11770 (2467441) | 2467441..2467629 | - | 189 | WP_000854559.1 | cell division inhibition protein DicB | - |
| LXN07_RS11775 (2468116) | 2468116..2468691 | - | 576 | WP_000344950.1 | hypothetical protein | - |
| LXN07_RS11780 (2468693) | 2468693..2468848 | - | 156 | WP_000379575.1 | DUF1391 family protein | - |
| LXN07_RS11785 (2469017) | 2469017..2469424 | - | 408 | WP_000381212.1 | helix-turn-helix domain-containing protein | - |
| LXN07_RS11790 (2469505) | 2469505..2469732 | + | 228 | WP_000921596.1 | Cro/CI family transcriptional regulator | - |
| LXN07_RS11795 (2469716) | 2469716..2470237 | + | 522 | WP_000705355.1 | toxin YdaT family protein | - |
| LXN07_RS11800 (2470218) | 2470218..2471183 | + | 966 | WP_000054487.1 | hypothetical protein | - |
| LXN07_RS11805 (2471224) | 2471224..2471622 | + | 399 | WP_001151242.1 | DUF977 family protein | - |
| LXN07_RS11810 (2471825) | 2471825..2472490 | + | 666 | WP_021523102.1 | epoxyqueuosine reductase QueH | - |
| LXN07_RS11815 (2472699) | 2472699..2473313 | + | 615 | WP_001265627.1 | hypothetical protein | - |
| LXN07_RS11820 (2473316) | 2473316..2474338 | + | 1023 | WP_000915483.1 | DUF4868 domain-containing protein | - |
| LXN07_RS11825 (2474843) | 2474843..2475865 | + | 1023 | Protein_2314 | ISNCY family transposase ISCARN112 | Transposase |
| LXN07_RS11830 (2475986) | 2475986..2476135 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| LXN07_RS11835 (2476572) | 2476572..2476904 | - | 333 | WP_001301033.1 | FlxA-like family protein | - |
| LXN07_RS11840 (2477107) | 2477107..2477412 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LXN07_RS11845 (2477437) | 2477437..2477676 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LXN07_RS11850 (2477676) | 2477676..2477963 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LXN07_RS11855 (2478035) | 2478035..2478190 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LXN07_RS11860 (2478407) | 2478407..2478658 | + | 252 | WP_000980994.1 | protein Rem | - |
| LXN07_RS11865 (2478725) | 2478725..2479003 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LXN07_RS11870 (2479005) | 2479005..2480054 | + | 1050 | WP_001265199.1 | DUF968 domain-containing protein | - |
| LXN07_RS11875 (2480068) | 2480068..2480820 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LXN07_RS11880 (2481098) | 2481098..2481187 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| LXN07_RS11885 (2481242) | 2481242..2481454 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LXN07_RS11890 (2481755) | 2481755..2481970 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LXN07_RS11895 (2482334) | 2482334..2482504 | - | 171 | WP_211180497.1 | putative zinc-binding protein YnfU | - |
| LXN07_RS11900 (2482724) | 2482724..2482939 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LXN07_RS11905 (2482944) | 2482944..2483255 | + | 312 | WP_000189916.1 | YdfR family protein | - |
| LXN07_RS11910 (2483252) | 2483252..2483785 | + | 534 | WP_001092971.1 | lysozyme | - |
| LXN07_RS11915 (2483782) | 2483782..2484279 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LXN07_RS11920 (2484642) | 2484642..2484854 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LXN07_RS11925 (2484865) | 2484865..2485053 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LXN07_RS11930 (2485056) | 2485056..2485121 | + | 66 | WP_120795388.1 | small protein YnfR | - |
| LXN07_RS11935 (2485201) | 2485201..2485356 | + | 156 | WP_001309517.1 | protein YnfN | - |
| LXN07_RS11940 (2485528) | 2485528..2485701 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LXN07_RS11945 (2485853) | 2485853..2486263 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LXN07_RS11950 (2486321) | 2486321..2486554 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LXN07_RS11955 (2486943) | 2486943..2487488 | + | 546 | WP_000453587.1 | DNA-packaging protein | - |
| LXN07_RS11960 (2487463) | 2487463..2489388 | + | 1926 | WP_001027269.1 | phage terminase large subunit family protein | - |
| LXN07_RS11965 (2489385) | 2489385..2489591 | + | 207 | WP_000198149.1 | gpW family protein | - |
| LXN07_RS11970 (2489588) | 2489588..2491189 | + | 1602 | WP_001356819.1 | phage portal protein | - |
| LXN07_RS11975 (2491170) | 2491170..2492489 | + | 1320 | WP_020233915.1 | S49 family peptidase | - |
| LXN07_RS11980 (2492499) | 2492499..2492831 | + | 333 | WP_001708751.1 | head decoration protein | - |
| LXN07_RS11985 (2492886) | 2492886..2493911 | + | 1026 | WP_000063277.1 | major capsid protein | - |
| LXN07_RS11990 (2493953) | 2493953..2494351 | + | 399 | WP_020233914.1 | DNA-packaging protein FI | - |
| LXN07_RS11995 (2494363) | 2494363..2494716 | + | 354 | WP_000752979.1 | head-tail joining protein | - |
| LXN07_RS12000 (2494728) | 2494728..2495306 | + | 579 | WP_000975070.1 | phage tail protein | - |
| LXN07_RS12005 (2495303) | 2495303..2495698 | + | 396 | WP_000683128.1 | phage minor tail U family protein | - |
| LXN07_RS12010 (2495706) | 2495706..2496446 | + | 741 | WP_001349920.1 | phage tail protein | - |
| LXN07_RS12015 (2496462) | 2496462..2496884 | + | 423 | WP_000479153.1 | phage minor tail protein G | - |
| LXN07_RS12020 (2496866) | 2496866..2497300 | + | 435 | WP_000459457.1 | phage tail assembly protein T | - |
| LXN07_RS12025 (2497293) | 2497293..2499854 | + | 2562 | WP_032153656.1 | phage tail tape measure protein | - |
| LXN07_RS12030 (2499851) | 2499851..2500180 | + | 330 | WP_000847345.1 | phage tail protein | - |
| LXN07_RS12035 (2500180) | 2500180..2500878 | + | 699 | WP_001551186.1 | phage minor tail protein L | - |
| LXN07_RS12040 (2500884) | 2500884..2501627 | + | 744 | WP_032153655.1 | C40 family peptidase | - |
| LXN07_RS12045 (2501564) | 2501564..2502166 | + | 603 | WP_049286672.1 | tail assembly protein | - |
| LXN07_RS12050 (2502227) | 2502227..2505706 | + | 3480 | WP_021523093.1 | host specificity protein J | - |
| LXN07_RS12055 (2505774) | 2505774..2506373 | + | 600 | WP_001542091.1 | hypothetical protein | VF |
| LXN07_RS12060 (2506438) | 2506438..2508813 | + | 2376 | WP_042099016.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LXN07_RS12065 (2508813) | 2508813..2509094 | + | 282 | WP_000654155.1 | hypothetical protein | - |
| LXN07_RS12070 (2509104) | 2509104..2510144 | + | 1041 | WP_001314683.1 | tail fiber domain-containing protein | - |
| LXN07_RS12075 (2510187) | 2510187..2510480 | + | 294 | WP_001405873.1 | hypothetical protein | - |
| LXN07_RS12080 (2510750) | 2510750..2510936 | - | 187 | Protein_2365 | DinI family protein | - |
| LXN07_RS12085 (2511026) | 2511026..2511820 | - | 795 | WP_000354607.1 | hypothetical protein | - |
| LXN07_RS12090 (2512293) | 2512293..2513150 | - | 858 | WP_000968125.1 | iron/manganese ABC transporter permease subunit SitD | - |
| LXN07_RS12095 (2513147) | 2513147..2514004 | - | 858 | WP_001101728.1 | iron/manganese ABC transporter permease subunit SitC | - |
| LXN07_RS12100 (2514001) | 2514001..2514828 | - | 828 | WP_000983718.1 | iron/manganese ABC transporter ATP-binding protein SitB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|