MGE detailed information
MGE type: Conjugative plasmid MGE length: 97624 bp
Accession: NZ_CP089921 Location: 1..97624 Organism: Rahnella victoriana strain JZ-GX1 Replicon: plasmid unnamed2
Accession: NZ_CP089921 Location: 1..97624 Organism: Rahnella victoriana strain JZ-GX1 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9880_RS24585 (J9880_24585) | 884..2095 | - | 1212 | WP_232770975.1 | hypothetical protein | - |
| J9880_RS24590 (J9880_24590) | 2195..4780 | - | 2586 | WP_232770976.1 | hypothetical protein | VF |
| J9880_RS24595 (J9880_24595) | 4837..5565 | - | 729 | WP_232770977.1 | hypothetical protein | VF |
| J9880_RS24600 (J9880_24600) | 5627..6211 | - | 585 | WP_232770978.1 | hypothetical protein | VF |
| J9880_RS24605 (J9880_24605) | 6928..7407 | + | 480 | WP_232770979.1 | hypothetical protein | - |
| J9880_RS24610 (J9880_24610) | 7778..8071 | + | 294 | WP_232770980.1 | hypothetical protein | - |
| J9880_RS24615 (J9880_24615) | 8951..9652 | - | 702 | WP_232770981.1 | TraX family protein | - |
| J9880_RS24620 (J9880_24620) | 9917..10180 | + | 264 | WP_232770982.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| J9880_RS24625 (J9880_24625) | 10167..10463 | + | 297 | WP_232770983.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| J9880_RS24630 (J9880_24630) | 10786..11778 | - | 993 | WP_232770984.1 | hypothetical protein | VF |
| J9880_RS24635 (J9880_24635) | 11775..12485 | - | 711 | WP_232770985.1 | hypothetical protein | VF |
| J9880_RS24640 (J9880_24640) | 12870..14528 | - | 1659 | WP_232770986.1 | hypothetical protein | VF |
| J9880_RS24645 (J9880_24645) | 14687..15172 | - | 486 | WP_232770987.1 | hypothetical protein | VF |
| J9880_RS24650 (J9880_24650) | 15234..15764 | - | 531 | WP_232770988.1 | hypothetical protein | VF |
| J9880_RS24655 (J9880_24655) | 15778..16743 | - | 966 | WP_232770989.1 | hypothetical protein | VF |
| J9880_RS24660 (J9880_24660) | 16756..19353 | - | 2598 | WP_232770990.1 | hypothetical protein | VF |
| J9880_RS24665 (J9880_24665) | 19403..20107 | - | 705 | WP_232770991.1 | hypothetical protein | VF |
| J9880_RS24670 (J9880_24670) | 20211..20729 | - | 519 | WP_232770992.1 | hypothetical protein | VF |
| J9880_RS24675 (J9880_24675) | 21741..23273 | - | 1533 | WP_232770993.1 | hypothetical protein | VF |
| J9880_RS24680 (J9880_24680) | 23870..24550 | + | 681 | WP_232770994.1 | response regulator transcription factor | - |
| J9880_RS24685 (J9880_24685) | 24570..25220 | + | 651 | WP_232770995.1 | LuxR C-terminal-related transcriptional regulator | - |
| J9880_RS24690 (J9880_24690) | 25277..25780 | - | 504 | WP_232770996.1 | FidL-like protein | - |
| J9880_RS24695 (J9880_24695) | 25777..26553 | - | 777 | WP_232770997.1 | helix-turn-helix domain-containing protein | - |
| J9880_RS24700 (J9880_24700) | 27190..28551 | + | 1362 | WP_232770998.1 | IS4 family transposase ISEc13 | Transposase |
| J9880_RS24705 (J9880_24705) | 28837..29667 | + | 831 | WP_232770999.1 | hypothetical protein | - |
| J9880_RS24710 (J9880_24710) | 29770..30165 | - | 396 | WP_232771000.1 | hypothetical protein | - |
| J9880_RS24715 (J9880_24715) | 30283..31014 | - | 732 | WP_232771016.1 | tyrosine-type recombinase/integrase | - |
| J9880_RS24720 (J9880_24720) | 31283..31651 | - | 369 | WP_232771001.1 | hypothetical protein | - |
| J9880_RS24725 (J9880_24725) | 31741..32025 | - | 285 | WP_232771002.1 | hypothetical protein | - |
| J9880_RS24730 (J9880_24730) | 32497..33591 | + | 1095 | WP_232771003.1 | transcriptional regulator | - |
| J9880_RS24735 (J9880_24735) | 33593..35836 | + | 2244 | WP_232771004.1 | P-loop NTPase fold protein | - |
| J9880_RS24740 (J9880_24740) | 35979..37352 | + | 1374 | WP_232771005.1 | hypothetical protein | - |
| J9880_RS24745 (J9880_24745) | 37451..38074 | - | 624 | WP_232771006.1 | DUF2913 family protein | - |
| J9880_RS24750 (J9880_24750) | 38180..39130 | - | 951 | WP_232771007.1 | hypothetical protein | VF |
| J9880_RS24755 (J9880_24755) | 39554..40435 | - | 882 | WP_232771008.1 | RepB family plasmid replication initiator protein | - |
| J9880_RS24760 (J9880_24760) | 41034..41336 | - | 303 | WP_232771009.1 | FRG domain-containing protein | - |
| J9880_RS24765 (J9880_24765) | 41657..41926 | - | 270 | WP_232771010.1 | ribbon-helix-helix domain-containing protein | - |
| J9880_RS24770 (J9880_24770) | 41957..42607 | - | 651 | WP_136375621.1 | Iron-sulfur cluster carrier protein | VF |
| J9880_RS24775 (J9880_24775) | 43202..44461 | - | 1260 | WP_232771011.1 | translesion error-prone DNA polymerase V subunit UmuC | - |
| J9880_RS24780 (J9880_24780) | 44468..44887 | - | 420 | WP_232771012.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| J9880_RS24785 (J9880_24785) | 45748..46344 | + | 597 | WP_232771013.1 | single-stranded DNA-binding protein | - |
| J9880_RS24790 (J9880_24790) | 46391..46642 | + | 252 | WP_232771014.1 | DUF905 family protein | - |
| J9880_RS24795 (J9880_24795) | 46704..48800 | + | 2097 | WP_232771015.1 | ParB/RepB/Spo0J family partition protein | - |
| J9880_RS24800 (J9880_24800) | 48838..49284 | + | 447 | WP_232770925.1 | conjugation system SOS inhibitor PsiB family protein | - |
| J9880_RS24805 (J9880_24805) | 49281..50000 | + | 720 | WP_232770926.1 | plasmid SOS inhibition protein A | - |
| J9880_RS24810 (J9880_24810) | 50004..50318 | + | 315 | WP_232770927.1 | theronine dehydrogenase | - |
| J9880_RS24815 (J9880_24815) | 50744..51427 | + | 684 | WP_232771017.1 | DNA methyltransferase | - |
| J9880_RS24820 (J9880_24820) | 51424..51648 | + | 225 | WP_232770928.1 | hypothetical protein | - |
| J9880_RS24825 (J9880_24825) | 52424..52639 | + | 216 | WP_232770929.1 | hypothetical protein | - |
| J9880_RS24830 (J9880_24830) | 52701..53060 | + | 360 | WP_232770930.1 | hypothetical protein | - |
| J9880_RS24835 (J9880_24835) | 53148..53393 | + | 246 | WP_232770931.1 | hypothetical protein | - |
| J9880_RS24840 (J9880_24840) | 53445..53822 | + | 378 | WP_232770932.1 | DUF3085 domain-containing protein | - |
| J9880_RS24845 (J9880_24845) | 53812..54672 | + | 861 | WP_232770933.1 | DUF4942 domain-containing protein | - |
| J9880_RS24850 (J9880_24850) | 54789..55043 | + | 255 | WP_232770934.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| J9880_RS24855 (J9880_24855) | 55033..55326 | + | 294 | WP_232770935.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| J9880_RS24860 (J9880_24860) | 55859..56116 | - | 258 | WP_232770936.1 | hypothetical protein | - |
| J9880_RS24865 (J9880_24865) | 57007..57828 | + | 822 | WP_232770937.1 | DUF932 domain-containing protein | - |
| J9880_RS24870 (J9880_24870) | 58181..58636 | - | 456 | WP_232770938.1 | hypothetical protein | VF |
| J9880_RS24875 (J9880_24875) | 59160..59552 | + | 393 | WP_232770939.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| J9880_RS24880 (J9880_24880) | 59599..60006 | + | 408 | WP_232770940.1 | relaxosome protein TraM | - |
| J9880_RS24885 (J9880_24885) | 60193..60891 | + | 699 | WP_232770941.1 | helix-turn-helix domain-containing protein | - |
| J9880_RS24890 (J9880_24890) | 61173..61379 | + | 207 | WP_232770942.1 | TraY domain-containing protein | - |
| J9880_RS24895 (J9880_24895) | 61480..61821 | + | 342 | WP_232770943.1 | type IV conjugative transfer system pilin TraA | - |
| J9880_RS24900 (J9880_24900) | 61835..62143 | + | 309 | WP_232770944.1 | type IV conjugative transfer system protein TraL | - |
| J9880_RS24905 (J9880_24905) | 62163..62729 | + | 567 | WP_232770945.1 | type IV conjugative transfer system protein TraE | - |
| J9880_RS24910 (J9880_24910) | 62716..63453 | + | 738 | WP_232770946.1 | type-F conjugative transfer system secretin TraK | - |
| J9880_RS24915 (J9880_24915) | 63440..64765 | + | 1326 | WP_232770947.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| J9880_RS24920 (J9880_24920) | 64768..65118 | + | 351 | WP_232770948.1 | hypothetical protein | - |
| J9880_RS24925 (J9880_24925) | 65115..65636 | + | 522 | WP_232770949.1 | type IV conjugative transfer system lipoprotein TraV | - |
| J9880_RS24930 (J9880_24930) | 65649..68240 | + | 2592 | WP_232770950.1 | type IV secretion system protein TraC | - |
| J9880_RS24935 (J9880_24935) | 68237..68662 | + | 426 | WP_232770951.1 | type-F conjugative transfer system protein TrbI | - |
| J9880_RS24940 (J9880_24940) | 68659..69288 | + | 630 | WP_232770952.1 | type-F conjugative transfer system protein TraW | - |
| J9880_RS24945 (J9880_24945) | 69285..70271 | + | 987 | WP_232770953.1 | conjugal transfer pilus assembly protein TraU | - |
| J9880_RS24950 (J9880_24950) | 70283..70504 | + | 222 | WP_232770954.1 | TraR/DksA C4-type zinc finger protein | - |
| J9880_RS24955 (J9880_24955) | 70501..71109 | + | 609 | WP_232770955.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| J9880_RS24960 (J9880_24960) | 71106..72974 | + | 1869 | WP_232770956.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| J9880_RS24965 (J9880_24965) | 72971..73720 | + | 750 | WP_232770957.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| J9880_RS24970 (J9880_24970) | 73732..74274 | + | 543 | WP_232770958.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| J9880_RS24975 (J9880_24975) | 74271..74552 | + | 282 | WP_232770959.1 | hypothetical protein | - |
| J9880_RS24980 (J9880_24980) | 74549..75904 | + | 1356 | WP_232770960.1 | conjugal transfer pilus assembly protein TraH | - |
| J9880_RS24985 (J9880_24985) | 75906..78767 | + | 2862 | WP_232770961.1 | conjugal transfer mating-pair stabilization protein TraG | - |
| J9880_RS24990 (J9880_24990) | 78751..79326 | + | 576 | WP_232770962.1 | hypothetical protein | - |
| J9880_RS24995 (J9880_24995) | 79400..81565 | + | 2166 | WP_232770963.1 | type IV conjugative transfer system coupling protein TraD | - |
| J9880_RS25000 (J9880_25000) | 81562..86751 | + | 5190 | WP_232770964.1 | Multifunctional conjugation protein TraI | Relaxase |
| J9880_RS25005 (J9880_25005) | 86853..87056 | + | 204 | WP_232770965.1 | Hha/YmoA family nucleoid-associated regulatory protein | - |
| J9880_RS25010 (J9880_25010) | 87197..87448 | + | 252 | WP_232770966.1 | replication regulatory protein RepA | - |
| J9880_RS25015 (J9880_25015) | 87896..88840 | + | 945 | WP_232771018.1 | Replication protein | - |
| J9880_RS25020 (J9880_25020) | 89755..90258 | + | 504 | WP_232770967.1 | ProQ/FINO family protein | - |
| J9880_RS25025 (J9880_25025) | 90451..92262 | + | 1812 | WP_232770968.1 | AAA family ATPase | - |
| J9880_RS25030 (J9880_25030) | 92497..92871 | - | 375 | WP_232770969.1 | DUF6232 family protein | - |
| J9880_RS25035 (J9880_25035) | 93725..94384 | + | 660 | WP_232770970.1 | DUF3313 domain-containing protein | - |
| J9880_RS25040 (J9880_25040) | 95209..95805 | + | 597 | WP_232770971.1 | LuxR C-terminal-related transcriptional regulator | - |
| J9880_RS25045 (J9880_25045) | 96101..97006 | + | 906 | WP_232770972.1 | LysR family transcriptional regulator | - |
| J9880_RS25050 (J9880_25050) | 97031..97357 | - | 327 | WP_232770973.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|