Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-RelB |
| Location | 54789..55326 | Replicon | plasmid unnamed2 |
| Accession | NZ_CP089921 | ||
| Organism | Rahnella victoriana strain JZ-GX1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | J9880_RS24855 | Protein ID | WP_232770935.1 |
| Coordinates | 55033..55326 (+) | Length | 98 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | J9880_RS24850 | Protein ID | WP_232770934.1 |
| Coordinates | 54789..55043 (+) | Length | 85 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| J9880_RS24810 (J9880_24810) | 50004..50318 | + | 315 | WP_232770927.1 | theronine dehydrogenase | - |
| J9880_RS24815 (J9880_24815) | 50744..51427 | + | 684 | WP_232771017.1 | DNA methyltransferase | - |
| J9880_RS24820 (J9880_24820) | 51424..51648 | + | 225 | WP_232770928.1 | hypothetical protein | - |
| J9880_RS24825 (J9880_24825) | 52424..52639 | + | 216 | WP_232770929.1 | hypothetical protein | - |
| J9880_RS24830 (J9880_24830) | 52701..53060 | + | 360 | WP_232770930.1 | hypothetical protein | - |
| J9880_RS24835 (J9880_24835) | 53148..53393 | + | 246 | WP_232770931.1 | hypothetical protein | - |
| J9880_RS24840 (J9880_24840) | 53445..53822 | + | 378 | WP_232770932.1 | DUF3085 domain-containing protein | - |
| J9880_RS24845 (J9880_24845) | 53812..54672 | + | 861 | WP_232770933.1 | DUF4942 domain-containing protein | - |
| J9880_RS24850 (J9880_24850) | 54789..55043 | + | 255 | WP_232770934.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
| J9880_RS24855 (J9880_24855) | 55033..55326 | + | 294 | WP_232770935.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| J9880_RS24860 (J9880_24860) | 55859..56116 | - | 258 | WP_232770936.1 | hypothetical protein | - |
| J9880_RS24865 (J9880_24865) | 57007..57828 | + | 822 | WP_232770937.1 | DUF932 domain-containing protein | - |
| J9880_RS24870 (J9880_24870) | 58181..58636 | - | 456 | WP_232770938.1 | transglycosylase SLT domain-containing protein | - |
| J9880_RS24875 (J9880_24875) | 59160..59552 | + | 393 | WP_232770939.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| J9880_RS24880 (J9880_24880) | 59599..60006 | + | 408 | WP_232770940.1 | relaxosome protein TraM | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Conjugative plasmid | - | pilW | 1..97624 | 97624 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 98 a.a. Molecular weight: 11541.52 Da Isoelectric Point: 10.2681
>T229629 WP_232770935.1 NZ_CP089921:55033-55326 [Rahnella victoriana]
MRFEIEFDARALKEWKKLDSAIREQFRKKLKKLQESPRVEANKLHGDLKDCYKIKLRKSGFRLIYQVIDLEIIIFVIAIG
KREKSEAYSDAENRLPS
MRFEIEFDARALKEWKKLDSAIREQFRKKLKKLQESPRVEANKLHGDLKDCYKIKLRKSGFRLIYQVIDLEIIIFVIAIG
KREKSEAYSDAENRLPS
Download Length: 294 bp
>T229629 NZ_CP124500:c1936588-1936214 [Escherichia coli]
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTACTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCAGTGAACTTTCTCGTTGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
ATGAAAACATTACCTGTATTACCCGGGCAGGCGGCCAGTTCTCGCCCGTCTCCTGTTGAAATCTGGCAGATACTGCTGTC
CCGACTACTGGACCAGCACTATGGCCTCACACTGAATGACACACCTTTTGCCGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCAGTGAACTTTCTCGTTGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATCCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9505.95 Da Isoelectric Point: 4.7962
>AT229629 WP_232770934.1 NZ_CP089921:54789-55043 [Rahnella victoriana]
MSTMQIRVEENLKQEATQVLKKLGVNPSDAMRQLLQYVVDNEKLPFSAVSVVVADSDNDEDIIKIVKERMAHPAARIRVN
IDEI
MSTMQIRVEENLKQEATQVLKKLGVNPSDAMRQLLQYVVDNEKLPFSAVSVVVADSDNDEDIIKIVKERMAHPAARIRVN
IDEI
Download Length: 255 bp
>AT229629 NZ_CP124500:c1937045-1936677 [Escherichia coli]
GTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCAGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCCGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
GTGTCAGACACACTCCCCGGGACAACACTTCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCACGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGCGCCAGTATCAGAGGCCTGT
TCAGCGATGCAGATGCGTACCACCCGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCAGCGGT
GAACTGAATCCCCGCCATCAGCATACCGTCACGCTGTATGCAAAAGGGCTGACCTGCAAAGCCGATACCCTCAGCAGTTG
TGGTTACGTTTATCTGGCTGTTTATCCGACGCCCGAAATGAAAAATTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|
Antitoxin
| Source | ID | Structure |
|---|