MGE detailed information
MGE type: Prophage MGE length: 121230 bp
Accession: NZ_CP089316 Location: 2166323..2287552 Organism: Citrobacter portucalensis strain K218 Replicon: chromosome
Accession: NZ_CP089316 Location: 2166323..2287552 Organism: Citrobacter portucalensis strain K218 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT989_RS10515 () | 2161592..2163640 | - | 2049 | WP_048235216.1 | carboxy terminal-processing peptidase | - |
| LT989_RS10520 () | 2163660..2164346 | - | 687 | WP_003833781.1 | RNA chaperone ProQ | - |
| LT989_RS10525 () | 2164443..2164940 | - | 498 | WP_003833782.1 | GAF domain-containing protein | - |
| LT989_RS10530 () | 2165069..2166354 | + | 1286 | Protein_2069 | membrane integrity lipid transport subunit YebS | - |
| LT989_RS10535 () | 2166323..2168956 | + | 2634 | WP_063940870.1 | hypothetical protein | VF |
| LT989_RS10540 () | 2169072..2170460 | + | 1389 | WP_197970159.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LT989_RS10545 () | 2170561..2170797 | + | 237 | WP_029139506.1 | YebV family protein | - |
| LT989_RS10550 () | 2170900..2171091 | + | 192 | WP_003833789.1 | YebW family protein | - |
| LT989_RS10555 () | 2171092..2171733 | - | 642 | WP_126957314.1 | protein-serine/threonine phosphatase | - |
| LT989_RS10560 () | 2172218..2172886 | + | 669 | WP_232397891.1 | SOS response-associated peptidase | - |
| LT989_RS10565 () | 2172916..2173323 | - | 408 | WP_232397892.1 | tail fiber assembly protein | - |
| LT989_RS10570 () | 2173323..2174345 | - | 1023 | WP_232397893.1 | hypothetical protein | - |
| LT989_RS10575 () | 2174348..2175004 | - | 657 | WP_232397894.1 | DUF2612 domain-containing protein | - |
| LT989_RS10580 () | 2175001..2176200 | - | 1200 | WP_126957892.1 | baseplate J/gp47 family protein | - |
| LT989_RS10585 () | 2176201..2176554 | - | 354 | WP_097727121.1 | hypothetical protein | - |
| LT989_RS10590 () | 2176554..2177306 | - | 753 | WP_126957890.1 | Gp138 family membrane-puncturing spike protein | - |
| LT989_RS10595 () | 2177723..2178079 | - | 357 | WP_060683662.1 | hypothetical protein | - |
| LT989_RS10600 () | 2178076..2179143 | - | 1068 | WP_126957888.1 | hypothetical protein | - |
| LT989_RS10605 () | 2179140..2179451 | - | 312 | WP_089502759.1 | hypothetical protein | - |
| LT989_RS10610 () | 2179448..2180026 | - | 579 | WP_089502760.1 | hypothetical protein | - |
| LT989_RS10615 () | 2180026..2181981 | - | 1956 | WP_089502761.1 | hypothetical protein | - |
| LT989_RS10620 () | 2181974..2182126 | - | 153 | WP_089502803.1 | lytic transglycosylase | - |
| LT989_RS10625 () | 2182162..2182587 | - | 426 | WP_089502762.1 | hypothetical protein | - |
| LT989_RS10630 () | 2182591..2183031 | - | 441 | WP_060683657.1 | DUF3277 family protein | - |
| LT989_RS10635 () | 2183043..2184536 | - | 1494 | WP_126957886.1 | DUF3383 domain-containing protein | - |
| LT989_RS10640 () | 2184539..2185081 | - | 543 | WP_126957884.1 | hypothetical protein | - |
| LT989_RS10645 () | 2185074..2185460 | - | 387 | WP_126957882.1 | head-tail adaptor | - |
| LT989_RS10650 () | 2185460..2185966 | - | 507 | WP_126957880.1 | hypothetical protein | - |
| LT989_RS10655 () | 2185963..2186376 | - | 414 | WP_126957878.1 | DUF4054 domain-containing protein | - |
| LT989_RS10660 () | 2186345..2186731 | - | 387 | WP_126957876.1 | hypothetical protein | - |
| LT989_RS10665 () | 2186769..2187713 | - | 945 | WP_089502769.1 | DUF2184 domain-containing protein | - |
| LT989_RS10670 () | 2187724..2188242 | - | 519 | WP_126957874.1 | hypothetical protein | - |
| LT989_RS10675 () | 2188254..2189513 | - | 1260 | WP_126957872.1 | DUF2213 domain-containing protein | - |
| LT989_RS10680 () | 2189568..2189987 | - | 420 | WP_126957870.1 | hypothetical protein | - |
| LT989_RS10685 () | 2190026..2190610 | - | 585 | WP_232397927.1 | phage minor head protein | - |
| LT989_RS10690 () | 2190621..2192105 | - | 1485 | WP_126957868.1 | DUF1073 domain-containing protein | - |
| LT989_RS10695 () | 2192108..2193313 | - | 1206 | WP_126957898.1 | PBSX family phage terminase large subunit | - |
| LT989_RS10700 () | 2193352..2194059 | - | 708 | WP_126957866.1 | terminase small subunit | - |
| LT989_RS10705 () | 2194270..2194824 | - | 555 | WP_126957864.1 | hypothetical protein | - |
| LT989_RS10710 () | 2194881..2195135 | - | 255 | WP_232397895.1 | peptidase | - |
| LT989_RS10715 () | 2195020..2195367 | - | 348 | WP_232397928.1 | DUF2570 domain-containing protein | - |
| LT989_RS10720 () | 2195400..2195798 | - | 399 | WP_126957896.1 | M15 family metallopeptidase | - |
| LT989_RS10725 () | 2195798..2196073 | - | 276 | WP_047416719.1 | phage holin family protein | - |
| LT989_RS10730 () | 2196070..2196468 | - | 399 | WP_049041756.1 | putative holin | - |
| LT989_RS10735 () | 2196672..2196821 | + | 150 | WP_162842358.1 | hypothetical protein | - |
| LT989_RS10740 () | 2196802..2197371 | - | 570 | WP_126957862.1 | hypothetical protein | - |
| LT989_RS10745 () | 2197576..2198391 | - | 816 | WP_126957860.1 | antitermination protein | - |
| LT989_RS10750 () | 2198388..2198510 | - | 123 | WP_185879304.1 | hypothetical protein | - |
| LT989_RS10755 () | 2198507..2199115 | - | 609 | WP_126957858.1 | recombination protein NinG | - |
| LT989_RS10760 () | 2199118..2199324 | - | 207 | WP_126957856.1 | hypothetical protein | - |
| LT989_RS10765 () | 2199324..2199923 | - | 600 | WP_126957855.1 | DUF1367 family protein | - |
| LT989_RS10770 () | 2200007..2200255 | - | 249 | WP_126957853.1 | hypothetical protein | - |
| LT989_RS10775 () | 2200972..2201229 | - | 258 | WP_126957849.1 | DNA polymerase III subunit theta | - |
| LT989_RS10780 () | 2201233..2201490 | - | 258 | WP_126957847.1 | DUF2767 family protein | - |
| LT989_RS10785 () | 2201535..2202272 | - | 738 | WP_232397896.1 | hypothetical protein | - |
| LT989_RS10790 () | 2202548..2202952 | - | 405 | WP_126957843.1 | ead/Ea22-like family protein | - |
| LT989_RS10795 () | 2202949..2203596 | - | 648 | WP_126957841.1 | hypothetical protein | - |
| LT989_RS10800 () | 2203593..2204228 | - | 636 | WP_126957839.1 | hypothetical protein | - |
| LT989_RS10805 () | 2204225..2204536 | - | 312 | WP_126957837.1 | hypothetical protein | - |
| LT989_RS10810 () | 2204555..2205304 | - | 750 | WP_232397897.1 | ATP-binding protein | - |
| LT989_RS10815 () | 2205307..2206218 | - | 912 | WP_232397898.1 | replication protein | - |
| LT989_RS10820 () | 2206303..2206842 | - | 540 | WP_232397899.1 | toxin YdaT domain-containing protein | - |
| LT989_RS10825 () | 2206854..2207075 | - | 222 | WP_019076542.1 | YdaS family helix-turn-helix protein | - |
| LT989_RS10830 () | 2207187..2207600 | + | 414 | WP_029139499.1 | helix-turn-helix domain-containing protein | - |
| LT989_RS10835 () | 2207894..2208100 | + | 207 | WP_232397929.1 | cell division inhibitor protein | - |
| LT989_RS10840 () | 2208112..2208273 | + | 162 | WP_048998007.1 | YdaE family protein | - |
| LT989_RS10845 () | 2208413..2211640 | + | 3228 | WP_232397900.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| LT989_RS10850 () | 2211652..2212761 | + | 1110 | WP_232397901.1 | RecT family recombinase | - |
| LT989_RS10855 () | 2212801..2213043 | + | 243 | WP_047415379.1 | DUF4060 family protein | - |
| LT989_RS10860 () | 2213108..2213380 | + | 273 | WP_049040229.1 | excisionase | - |
| LT989_RS10865 () | 2213349..2214434 | + | 1086 | WP_126957916.1 | hypothetical protein ; Integrase | Integrase |
| - | 2214507..2214650 | + | 144 | - | - | Antitoxin Detail |
| - | 2214512..2214615 | - | 104 | - | - | Toxin Detail |
| LT989_RS10870 () | 2214771..2215109 | - | 339 | WP_003833793.1 | YebY family protein | - |
| LT989_RS10875 () | 2215130..2216002 | - | 873 | WP_003833795.1 | copper homeostasis membrane protein CopD | - |
| LT989_RS10880 () | 2216006..2216380 | - | 375 | WP_003833799.1 | CopC domain-containing protein YobA | - |
| LT989_RS10885 () | 2216524..2216754 | + | 231 | WP_003833800.1 | DNA polymerase III subunit theta | - |
| LT989_RS10890 () | 2216861..2217517 | + | 657 | WP_003833801.1 | carbon-nitrogen hydrolase family protein | - |
| LT989_RS10895 () | 2217541..2218203 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
| LT989_RS10900 () | 2218194..2220248 | - | 2055 | WP_185879306.1 | oligopeptidase B | - |
| LT989_RS10905 () | 2220335..2220994 | - | 660 | WP_003833804.1 | tellurite resistance TerB family protein | - |
| LT989_RS10910 () | 2221089..2221442 | - | 354 | WP_126957912.1 | protein YebF | - |
| LT989_RS10915 () | 2221564..2221854 | - | 291 | WP_003833810.1 | DNA damage-inducible protein YebG | - |
| LT989_RS10920 () | 2221987..2223165 | + | 1179 | WP_126957910.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LT989_RS10925 () | 2223233..2223874 | - | 642 | WP_003034901.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LT989_RS10930 () | 2223909..2225720 | - | 1812 | WP_003833815.1 | phosphogluconate dehydratase | - |
| LT989_RS10935 () | 2225954..2227429 | - | 1476 | WP_003833817.1 | glucose-6-phosphate dehydrogenase | - |
| LT989_RS10940 () | 2227794..2228663 | + | 870 | WP_126957920.1 | MurR/RpiR family transcriptional regulator | - |
| LT989_RS10945 () | 2228783..2230225 | + | 1443 | WP_003833821.1 | pyruvate kinase | - |
| LT989_RS10950 () | 2230272..2231243 | - | 972 | WP_126957908.1 | Lipid A biosynthesis myristoyltransferase | VF |
| LT989_RS10955 () | 2231364..2232683 | - | 1320 | WP_003833825.1 | murein DD-endopeptidase MepM | - |
| LT989_RS10960 () | 2232699..2233643 | - | 945 | WP_063940898.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| LT989_RS10965 () | 2233722..2234477 | + | 756 | WP_003833829.1 | Zinc import ATP-binding protein ZnuC | VF |
| LT989_RS10970 () | 2234474..2235259 | + | 786 | WP_003833831.1 | High-affinity zinc uptake system membrane protein ZnuB | VF |
| LT989_RS10975 () | 2235338..2236348 | - | 1011 | WP_003034872.1 | Holliday junction branch migration DNA helicase RuvB | - |
| LT989_RS10980 () | 2236357..2236968 | - | 612 | WP_003034869.1 | Holliday junction branch migration protein RuvA | - |
| LT989_RS10985 () | 2237049..2237570 | - | 522 | WP_003034867.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LT989_RS10990 () | 2237605..2238348 | - | 744 | WP_232397902.1 | putative transcriptional regulatory protein YebC | VF |
| LT989_RS10995 () | 2238377..2238820 | - | 444 | WP_003833839.1 | dihydroneopterin triphosphate diphosphatase | - |
| LT989_RS11000 () | 2238822..2240594 | - | 1773 | WP_126957906.1 | aspartate--tRNA ligase | - |
| LT989_RS11005 () | 2240882..2241448 | + | 567 | WP_126957904.1 | hydrolase | - |
| LT989_RS11010 () | 2241445..2241540 | + | 96 | Protein_2165 | hypothetical protein | - |
| LT989_RS11015 () | 2242043..2242548 | - | 506 | Protein_2166 | LexA family transcriptional regulator | - |
| LT989_RS11020 () | 2242579..2242659 | + | 81 | Protein_2167 | DinI family protein | - |
| LT989_RS11025 () | 2242753..2242995 | + | 243 | WP_182293199.1 | DinI-like family protein | - |
| LT989_RS11030 () | 2243065..2243472 | - | 408 | WP_134215249.1 | tail fiber assembly protein | - |
| LT989_RS11035 () | 2243472..2244347 | - | 876 | WP_232397903.1 | hypothetical protein | - |
| LT989_RS11040 () | 2244399..2244992 | - | 594 | WP_001515583.1 | YmfQ family protein | - |
| LT989_RS11045 () | 2244989..2246131 | - | 1143 | WP_016237005.1 | baseplate J/gp47 family protein | - |
| LT989_RS11050 () | 2246133..2246570 | - | 438 | WP_001279799.1 | phage GP46 family protein | - |
| LT989_RS11055 () | 2246567..2247151 | - | 585 | WP_023568807.1 | phage baseplate assembly protein | - |
| LT989_RS11060 () | 2247148..2248233 | - | 1086 | WP_001515585.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| LT989_RS11065 () | 2248230..2249633 | - | 1404 | WP_001139208.1 | DNA circularization N-terminal domain-containing protein | - |
| LT989_RS11070 () | 2249977..2251836 | - | 1860 | WP_001472858.1 | hypothetical protein | - |
| LT989_RS11075 () | 2251978..2252256 | - | 279 | WP_000807719.1 | phage tail assembly protein | - |
| LT989_RS11080 () | 2252258..2252629 | - | 372 | WP_000896638.1 | phage tail tube protein | - |
| LT989_RS11085 () | 2252633..2254135 | - | 1503 | WP_001472192.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| LT989_RS11090 () | 2254132..2254329 | - | 198 | WP_000497745.1 | DUF2635 domain-containing protein | - |
| LT989_RS11095 () | 2254333..2254878 | - | 546 | WP_121540161.1 | ATP-binding protein | - |
| LT989_RS11100 () | 2254875..2255234 | - | 360 | WP_000537794.1 | hypothetical protein | - |
| LT989_RS11105 () | 2255239..2255619 | - | 381 | WP_001118869.1 | hypothetical protein | - |
| LT989_RS11110 () | 2255621..2256670 | - | 1050 | WP_001472190.1 | major capsid protein | - |
| LT989_RS11115 () | 2256768..2257172 | - | 405 | WP_001472189.1 | head decoration protein | - |
| LT989_RS11120 () | 2257172..2257762 | - | 591 | WP_125112468.1 | hypothetical protein | - |
| LT989_RS11125 () | 2257764..2258630 | - | 867 | WP_001052909.1 | S49 family peptidase | - |
| LT989_RS11130 () | 2258627..2260264 | - | 1638 | WP_125112469.1 | phage portal protein | - |
| LT989_RS11135 () | 2260264..2260527 | - | 264 | WP_000483309.1 | gpW family head-tail joining protein | - |
| LT989_RS11140 () | 2260536..2262659 | - | 2124 | WP_125112753.1 | phage terminase large subunit family protein | - |
| LT989_RS11145 () | 2262601..2263170 | - | 570 | WP_000210383.1 | hypothetical protein | - |
| LT989_RS11150 () | 2263461..2263964 | + | 504 | WP_032652440.1 | hypothetical protein | - |
| LT989_RS11155 () | 2263975..2264613 | - | 639 | WP_125112470.1 | hypothetical protein | - |
| LT989_RS11160 () | 2264812..2265060 | + | 249 | WP_232397930.1 | DUF1883 domain-containing protein | - |
| LT989_RS11165 () | 2265019..2265216 | - | 198 | WP_001548474.1 | hypothetical protein | - |
| LT989_RS11170 () | 2265294..2265818 | - | 525 | WP_125112471.1 | Rha family transcriptional regulator | - |
| LT989_RS11175 () | 2266621..2266794 | - | 174 | WP_001100119.1 | addiction module toxin, GnsA/GnsB family | - |
| LT989_RS11180 () | 2266999..2267229 | - | 231 | WP_000756041.1 | hypothetical protein | - |
| LT989_RS11185 () | 2267303..2267491 | - | 189 | WP_057069020.1 | hypothetical protein | - |
| LT989_RS11190 () | 2267502..2267714 | - | 213 | WP_000066494.1 | cold shock protein CspG | - |
| LT989_RS11195 () | 2268094..2268249 | - | 156 | Protein_2202 | DUF2514 family protein | - |
| LT989_RS11200 () | 2268287..2268484 | - | 198 | WP_024174517.1 | hypothetical protein | - |
| LT989_RS11205 () | 2268650..2268799 | + | 150 | WP_230133456.1 | YnfU family zinc-binding protein | - |
| LT989_RS11210 () | 2268875..2269105 | - | 231 | WP_121367788.1 | hypothetical protein | - |
| LT989_RS11215 () | 2269105..2269635 | - | 531 | WP_185879265.1 | DUF2514 domain-containing protein | - |
| LT989_RS11220 () | 2269614..2270162 | - | 549 | WP_106107115.1 | lysozyme | - |
| LT989_RS11225 () | 2270134..2270412 | - | 279 | WP_016150433.1 | phage holin | - |
| LT989_RS11230 () | 2270857..2271354 | - | 498 | WP_232397904.1 | hypothetical protein | - |
| LT989_RS11235 () | 2271607..2272554 | + | 948 | WP_125112475.1 | hypothetical protein | - |
| LT989_RS11240 () | 2272573..2273022 | + | 450 | WP_125112476.1 | hypothetical protein | - |
| LT989_RS11245 () | 2273061..2273429 | - | 369 | WP_198579279.1 | antiterminator Q family protein | - |
| LT989_RS11250 () | 2273444..2274439 | - | 996 | WP_125112478.1 | DUF968 domain-containing protein | - |
| LT989_RS11255 () | 2274436..2275320 | - | 885 | WP_232397905.1 | ORF6N domain-containing protein | - |
| LT989_RS11260 () | 2275407..2275805 | - | 399 | WP_057065015.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LT989_RS11265 () | 2275802..2276680 | - | 879 | WP_125112479.1 | phage N-6-adenine-methyltransferase | - |
| LT989_RS11270 () | 2276677..2277534 | - | 858 | WP_125112480.1 | conserved phage C-terminal domain-containing protein | - |
| LT989_RS11275 () | 2277524..2277703 | - | 180 | WP_232397906.1 | DUF4222 domain-containing protein | - |
| LT989_RS11280 () | 2277876..2278427 | - | 552 | WP_125112481.1 | YmfL family putative regulatory protein | - |
| LT989_RS11285 () | 2278438..2278683 | - | 246 | WP_125112482.1 | helix-turn-helix transcriptional regulator | - |
| LT989_RS11290 () | 2278781..2279473 | + | 693 | WP_125112483.1 | helix-turn-helix transcriptional regulator | - |
| LT989_RS11295 () | 2279687..2279929 | + | 243 | WP_232397907.1 | hypothetical protein | - |
| LT989_RS11300 () | 2279904..2280137 | - | 234 | WP_125112754.1 | hypothetical protein | - |
| LT989_RS11305 () | 2281072..2281443 | + | 372 | WP_001515608.1 | hypothetical protein | - |
| LT989_RS11310 () | 2281500..2282327 | + | 828 | WP_125112484.1 | DUF2303 family protein | - |
| LT989_RS11315 () | 2282456..2282995 | + | 540 | WP_125112485.1 | HD family hydrolase | - |
| LT989_RS11320 () | 2282983..2283159 | + | 177 | WP_001253786.1 | hypothetical protein | - |
| LT989_RS11325 () | 2283156..2283410 | + | 255 | WP_125112486.1 | hypothetical protein | - |
| LT989_RS11330 () | 2283407..2283751 | + | 345 | WP_125112487.1 | hypothetical protein | - |
| LT989_RS11335 () | 2283744..2284268 | + | 525 | WP_232397908.1 | ead/Ea22-like family protein | - |
| LT989_RS11340 () | 2284270..2284545 | + | 276 | WP_125112488.1 | hypothetical protein | - |
| LT989_RS11345 () | 2284556..2285335 | + | 780 | WP_126955834.1 | hypothetical protein | - |
| LT989_RS11350 () | 2285337..2285906 | + | 570 | WP_125112490.1 | 3'-5' exonuclease | - |
| LT989_RS11355 () | 2285947..2286183 | + | 237 | WP_125112491.1 | excisionase family protein | - |
| LT989_RS11360 () | 2286239..2287552 | + | 1314 | WP_125112492.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LT989_RS11365 () | 2287531..2288304 | + | 774 | WP_185879268.1 | DUF72 domain-containing protein | - |
| LT989_RS11370 () | 2288357..2288752 | + | 396 | WP_003833847.1 | MAPEG family protein | - |
| LT989_RS11375 () | 2288793..2289536 | + | 744 | WP_003034686.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| LT989_RS11380 () | 2289533..2290501 | + | 969 | WP_125112494.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| LT989_RS11385 () | 2290736..2291482 | - | 747 | WP_125112495.1 | copper homeostasis protein CutC | - |
| LT989_RS11390 () | 2291485..2292051 | - | 567 | WP_003833855.1 | VOC family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|