Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2214507..2214650 | Replicon | chromosome |
| Accession | NZ_CP089316 | ||
| Organism | Citrobacter portucalensis strain K218 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2214512..2214615 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2214507..2214650 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT989_RS10850 | 2211652..2212761 | + | 1110 | WP_232397901.1 | RecT family recombinase | - |
| LT989_RS10855 | 2212801..2213043 | + | 243 | WP_047415379.1 | DUF4060 family protein | - |
| LT989_RS10860 | 2213108..2213380 | + | 273 | WP_049040229.1 | excisionase | - |
| LT989_RS10865 | 2213349..2214434 | + | 1086 | WP_126957916.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2214507..2214650 | + | 144 | - | - | Antitoxin |
| - | 2214512..2214615 | - | 104 | - | - | Toxin |
| LT989_RS10870 | 2214771..2215109 | - | 339 | WP_003833793.1 | YebY family protein | - |
| LT989_RS10875 | 2215130..2216002 | - | 873 | WP_003833795.1 | copper homeostasis membrane protein CopD | - |
| LT989_RS10880 | 2216006..2216380 | - | 375 | WP_003833799.1 | CopC domain-containing protein YobA | - |
| LT989_RS10885 | 2216524..2216754 | + | 231 | WP_003833800.1 | DNA polymerase III subunit theta | - |
| LT989_RS10890 | 2216861..2217517 | + | 657 | WP_003833801.1 | carbon-nitrogen hydrolase family protein | - |
| LT989_RS10895 | 2217541..2218203 | + | 663 | WP_003833802.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2166323..2287552 | 121229 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T228064 NZ_CP089316:c2214615-2214512 [Citrobacter portucalensis]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT228064 NZ_CP089316:2214507-2214650 [Citrobacter portucalensis]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
