MGE detailed information
MGE type: Genomic_island MGE length: 44315 bp
Accession: NZ_CP089313 Location: 3609701..3654015 Organism: Salmonella enterica subsp. enterica serovar Indiana strain YZ21MCS4 Replicon: chromosome
Accession: NZ_CP089313 Location: 3609701..3654015 Organism: Salmonella enterica subsp. enterica serovar Indiana strain YZ21MCS4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT987_RS17720 () | 3605272..3607716 | + | 2445 | WP_000973041.1 | acyl-CoA dehydrogenase FadE | - |
| LT987_RS17725 () | 3607825..3608592 | + | 768 | WP_023226791.1 | amidohydrolase | - |
| LT987_RS17730 () | 3608963..3609370 | + | 408 | WP_000788200.1 | Spy/CpxP family protein refolding chaperone | - |
| LT987_RS17735 () | 3609701..3610420 | + | 720 | WP_023226792.1 | Outer membrane protein PagN | VF |
| LT987_RS17740 () | 3610424..3610612 | - | 189 | WP_031603649.1 | hypothetical protein | - |
| LT987_RS17745 () | 3610648..3610781 | + | 134 | Protein_3478 | transposase | - |
| LT987_RS17750 () | 3611383..3612000 | - | 618 | WP_023226793.1 | protein TioA | - |
| LT987_RS17755 () | 3612140..3612595 | - | 456 | WP_000141547.1 | Lrp/AsnC family transcriptional regulator | - |
| LT987_RS17760 () | 3612728..3613774 | - | 1047 | WP_223228889.1 | CfaE/CblD family pilus tip adhesin | - |
| LT987_RS17765 () | 3613809..3616496 | - | 2688 | WP_023226795.1 | hypothetical protein | VF |
| LT987_RS17770 () | 3616605..3617180 | - | 576 | WP_000287810.1 | CFA/I fimbrial subunit B | VF |
| LT987_RS17775 () | 3617231..3617941 | - | 711 | WP_001009507.1 | hypothetical protein | VF |
| LT987_RS17780 () | 3618848..3619532 | + | 685 | Protein_3485 | IS21 family transposase ISEc62 | Transposase |
| LT987_RS17785 () | 3619572..3619758 | - | 187 | Protein_3486 | IS3 family transposase IS1351 | Transposase |
| LT987_RS17790 () | 3619839..3619958 | - | 120 | Protein_3487 | hypothetical protein | - |
| LT987_RS17795 () | 3620078..3621025 | - | 948 | WP_000970302.1 | LysR family transcriptional regulator | - |
| LT987_RS17800 () | 3621519..3621759 | - | 241 | Protein_3489 | PerC family transcriptional regulator | - |
| LT987_RS17805 () | 3621842..3622663 | - | 822 | WP_023209688.1 | polysaccharide deacetylase family protein | - |
| LT987_RS17810 () | 3623071..3623541 | - | 471 | WP_000266939.1 | AfaD family invasin | - |
| LT987_RS17815 () | 3623563..3626073 | - | 2511 | WP_053505593.1 | F1 capsule-anchoring protein | VF |
| LT987_RS17820 () | 3626097..3626837 | - | 741 | WP_051129375.1 | Chaperone protein caf1M | VF |
| LT987_RS17825 () | 3626912..3627409 | - | 498 | WP_051129374.1 | Saf-pilin pilus formation protein SafA | - |
| LT987_RS17830 () | 3627542..3628036 | - | 495 | WP_051129373.1 | hypothetical protein | - |
| LT987_RS17835 () | 3628804..3629505 | - | 702 | Protein_3496 | integrase core domain-containing protein | - |
| LT987_RS17840 () | 3629569..3629820 | + | 252 | WP_131166435.1 | SymE family type I addiction module toxin | Toxin Detail |
| - | 3629585..3629810 | - | 226 | - | - | Antitoxin Detail |
| LT987_RS17845 () | 3629866..3630330 | - | 465 | WP_127201574.1 | hypothetical protein | - |
| LT987_RS17850 () | 3630711..3631556 | - | 846 | Protein_3499 | Putative deoxyribonuclease RhsC | VF |
| LT987_RS17855 () | 3631576..3631713 | + | 138 | WP_023227287.1 | hypothetical protein | - |
| LT987_RS17860 () | 3631856..3632464 | - | 609 | WP_053505599.1 | hypothetical protein | - |
| LT987_RS17865 () | 3632465..3636589 | - | 4125 | WP_023227779.1 | RHS repeat-associated core domain-containing protein | - |
| LT987_RS17870 () | 3636608..3637054 | - | 447 | WP_000375832.1 | DcrB-related protein | - |
| LT987_RS17875 () | 3637078..3639267 | - | 2190 | WP_023227778.1 | Actin cross-linking toxin VgrG1 | VF |
| LT987_RS17880 () | 3639664..3640185 | - | 522 | WP_000968384.1 | DUF2778 domain-containing protein | - |
| LT987_RS17885 () | 3640209..3640625 | - | 417 | WP_023227777.1 | DUF2195 family protein | - |
| LT987_RS17890 () | 3640622..3640716 | - | 95 | Protein_3507 | cytoplasmic protein | - |
| LT987_RS17895 () | 3640752..3641213 | - | 462 | WP_001668725.1 | hypothetical protein | - |
| LT987_RS17900 () | 3641198..3641668 | - | 471 | WP_023227776.1 | glucosaminidase domain-containing protein | - |
| LT987_RS17905 () | 3641711..3642478 | - | 768 | WP_001254127.1 | TagF domain-containing protein | - |
| LT987_RS17910 () | 3642478..3646347 | - | 3870 | WP_023227775.1 | hypothetical protein | VF |
| LT987_RS17915 () | 3646381..3646812 | - | 432 | WP_023166851.1 | putative Shiga-like toxin A subunit | - |
| LT987_RS17920 () | 3647014..3647787 | - | 774 | WP_023227774.1 | Rap1a/Tai family immunity protein | - |
| LT987_RS17925 () | 3647792..3649096 | - | 1305 | WP_000132483.1 | Outer membrane porin F | VF |
| LT987_RS17930 () | 3649093..3650435 | - | 1343 | Protein_3515 | hypothetical protein | VF |
| LT987_RS17935 () | 3650439..3650975 | - | 537 | WP_023227772.1 | hypothetical protein | VF |
| LT987_RS17940 () | 3651042..3651527 | - | 486 | WP_000119443.1 | Protein hcp1 | VF |
| LT987_RS17945 () | 3651670..3652053 | - | 384 | WP_000379146.1 | type VI secretion system amidase immunity protein Tai4 | - |
| LT987_RS17950 () | 3652038..3652523 | - | 486 | WP_001081544.1 | type VI secretion system amidase effector protein Tae4 | - |
| LT987_RS17955 () | 3652566..3652760 | - | 195 | Protein_3520 | type VI secretion system lipoprotein TssJ | - |
| LT987_RS17960 () | 3652828..3653313 | - | 486 | WP_000312802.1 | Protein hcp1 | VF |
| LT987_RS17965 () | 3653569..3653901 | - | 333 | WP_077907151.1 | hypothetical protein | - |
| LT987_RS17970 () | 3654028..3654186 | - | 159 | WP_001584850.1 | BPSL0067 family protein | - |
| LT987_RS17975 () | 3654201..3655709 | - | 1509 | WP_000013884.1 | type VI secretion system contractile sheath large subunit | - |
| LT987_RS17980 () | 3655733..3656278 | - | 546 | WP_023227770.1 | type VI secretion system contractile sheath small subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|