MGE detailed information
MGE type: Prophage MGE length: 35283 bp
Accession: NZ_CP089313 Location: 2097003..2132285 Organism: Salmonella enterica subsp. enterica serovar Indiana strain YZ21MCS4 Replicon: chromosome
Accession: NZ_CP089313 Location: 2097003..2132285 Organism: Salmonella enterica subsp. enterica serovar Indiana strain YZ21MCS4 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT987_RS10230 () | 2093276..2093917 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LT987_RS10235 () | 2094017..2095195 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LT987_RS10240 () | 2095326..2095616 | + | 291 | WP_001579458.1 | DNA damage-inducible protein YebG | - |
| LT987_RS10245 () | 2095684..2096037 | + | 354 | WP_001042123.1 | protein YebF | - |
| LT987_RS10250 () | 2096131..2096790 | + | 660 | WP_000024709.1 | tellurite resistance TerB family protein | - |
| LT987_RS10255 () | 2097003..2099054 | + | 2052 | WP_000936990.1 | oligopeptidase B | - |
| LT987_RS10260 () | 2099089..2099787 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| LT987_RS10265 () | 2099811..2100467 | - | 657 | WP_023227121.1 | carbon-nitrogen hydrolase family protein | - |
| LT987_RS10270 () | 2100575..2100805 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LT987_RS10275 () | 2100943..2101317 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LT987_RS10280 () | 2101318..2102193 | + | 876 | WP_001579467.1 | copper homeostasis membrane protein CopD | - |
| LT987_RS10285 () | 2102210..2102563 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2102663..2102808 | - | 146 | - | - | Antitoxin Detail |
| - | 2102703..2102806 | + | 104 | - | - | Toxin Detail |
| LT987_RS10290 () | 2102927..2103577 | - | 651 | Protein_2014 | hypothetical protein ; Integrase | Integrase |
| LT987_RS10295 () | 2103847..2104053 | + | 207 | Protein_2015 | phage tail protein | - |
| LT987_RS10300 () | 2104138..2104380 | + | 243 | Protein_2016 | DUF4376 domain-containing protein | - |
| LT987_RS10305 () | 2104486..2104817 | + | 332 | Protein_2017 | DUF1353 domain-containing protein | - |
| LT987_RS10310 () | 2104866..2104975 | + | 110 | Protein_2018 | tail fiber assembly protein | - |
| LT987_RS10315 () | 2105066..2105251 | - | 186 | WP_071787785.1 | PagK family vesicle-borne virulence factor | - |
| LT987_RS10320 () | 2105503..2105691 | - | 189 | Protein_2020 | tail fiber assembly protein | - |
| LT987_RS10325 () | 2105687..2106457 | - | 771 | WP_000758583.1 | transporter substrate-binding domain-containing protein | - |
| LT987_RS10330 () | 2106520..2106624 | + | 105 | Protein_2022 | DUF4113 domain-containing protein | - |
| LT987_RS10335 () | 2106947..2107075 | + | 129 | Protein_2023 | helix-turn-helix domain-containing protein | - |
| LT987_RS10340 () | 2107104..2107904 | - | 801 | WP_001536069.1 | hypothetical protein | - |
| LT987_RS10345 () | 2108582..2109279 | + | 698 | WP_095033700.1 | IS1 family transposase IS1R | Transposase |
| LT987_RS10350 () | 2109621..2110042 | - | 422 | Protein_2026 | tyrosine-type recombinase/integrase | - |
| LT987_RS10355 () | 2110112..2111319 | + | 1208 | Protein_2027 | IS256 family transposase ISEc39 | Transposase |
| LT987_RS10360 () | 2111465..2111605 | - | 141 | WP_001576018.1 | hypothetical protein | - |
| LT987_RS10365 () | 2111771..2112040 | - | 270 | WP_077909973.1 | hypothetical protein | - |
| LT987_RS10370 () | 2112410..2112829 | + | 420 | WP_023226867.1 | GNAT family N-acetyltransferase | - |
| LT987_RS10375 () | 2113216..2113692 | - | 477 | WP_023226866.1 | hypothetical protein | - |
| LT987_RS10380 () | 2114020..2114415 | - | 396 | WP_000422884.1 | DUF1398 domain-containing protein | - |
| LT987_RS10385 () | 2115099..2115821 | + | 723 | WP_023226865.1 | Guanine nucleotide exchange factor sopE2 | VF |
| LT987_RS10390 () | 2116106..2116270 | + | 165 | WP_001134856.1 | membrane protein | - |
| LT987_RS10395 () | 2116493..2117143 | + | 651 | WP_023226864.1 | protein-serine/threonine phosphatase | - |
| LT987_RS10400 () | 2117162..2117353 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| LT987_RS10405 () | 2117464..2117700 | - | 237 | WP_024131108.1 | YebV family protein | - |
| LT987_RS10410 () | 2117818..2119257 | - | 1440 | WP_051129280.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LT987_RS10415 () | 2119335..2121968 | - | 2634 | WP_001529852.1 | hypothetical protein | VF |
| LT987_RS10420 () | 2121937..2123220 | - | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| LT987_RS10425 () | 2123349..2123846 | + | 498 | WP_023226862.1 | GAF domain-containing protein | - |
| LT987_RS10430 () | 2123944..2124630 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| LT987_RS10435 () | 2124650..2126698 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| LT987_RS10440 () | 2126892..2127773 | + | 882 | WP_000984498.1 | protease HtpX | - |
| LT987_RS10445 () | 2127821..2129194 | - | 1374 | WP_000416139.1 | MFS transporter | - |
| LT987_RS10450 () | 2129370..2130161 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| LT987_RS10455 () | 2130373..2130612 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| LT987_RS10460 () | 2130770..2130913 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| LT987_RS10465 () | 2130984..2131271 | + | 288 | WP_001000660.1 | YebO family protein | - |
| LT987_RS10470 () | 2131920..2132063 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| LT987_RS10475 () | 2132076..2132285 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LT987_RS10480 () | 2132505..2134250 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| LT987_RS10485 () | 2134316..2135125 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LT987_RS10490 () | 2135122..2135688 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| LT987_RS10495 () | 2136098..2136556 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|