MGE detailed information
MGE type: Genomic_island MGE length: 37641 bp
Accession: NZ_CP089304 Location: 3677033..3714673 Organism: Pseudomonas sp. NIBR-H-19 Replicon: chromosome
Accession: NZ_CP089304 Location: 3677033..3714673 Organism: Pseudomonas sp. NIBR-H-19 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LS633_RS16985 (LS633_16985) | 3674345..3674902 | + | 558 | WP_210702409.1 | cysteine hydrolase family protein | - |
| LS633_RS16990 (LS633_16990) | 3675180..3675389 | - | 210 | WP_008083915.1 | SEC-C metal-binding domain-containing protein | - |
| LS633_RS16995 (LS633_16995) | 3675386..3675880 | - | 495 | WP_210702408.1 | LEA type 2 family protein | - |
| LS633_RS17000 (LS633_17000) | 3675938..3676459 | - | 522 | WP_232391545.1 | YchJ family protein | - |
| LS633_RS17005 (LS633_17005) | 3676703..3677019 | - | 317 | Protein_3340 | IS5/IS1182 family transposase | - |
| LS633_RS17010 (LS633_17010) | 3677042..3677569 | + | 528 | WP_232391546.1 | hypothetical protein | - |
| LS633_RS17015 (LS633_17015) | 3677684..3677890 | - | 207 | WP_232392857.1 | helix-turn-helix transcriptional regulator | - |
| LS633_RS17020 (LS633_17020) | 3677994..3678581 | + | 588 | WP_232391547.1 | hypothetical protein | - |
| LS633_RS17025 (LS633_17025) | 3678578..3679978 | + | 1401 | WP_232391548.1 | DEAD/DEAH box helicase family protein | - |
| LS633_RS17030 (LS633_17030) | 3680570..3682969 | - | 2400 | WP_088500413.1 | membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | - |
| LS633_RS17035 (LS633_17035) | 3683844..3685136 | + | 1293 | WP_047292077.1 | carbohydrate porin | - |
| LS633_RS17040 (LS633_17040) | 3685371..3685703 | - | 333 | WP_232391549.1 | hypothetical protein | - |
| LS633_RS17045 (LS633_17045) | 3686205..3686309 | + | 105 | Protein_3348 | IS66 family transposase ISPpu19 | Transposase |
| LS633_RS17050 (LS633_17050) | 3686711..3687136 | + | 426 | WP_207262404.1 | hypothetical protein | - |
| LS633_RS17055 (LS633_17055) | 3687307..3687855 | + | 549 | WP_232391550.1 | toxin-antitoxin system antitoxin subunit | - |
| LS633_RS17060 (LS633_17060) | 3687809..3688786 | + | 978 | WP_232391551.1 | IS5 family transposase ISPssy | Transposase |
| LS633_RS17065 (LS633_17065) | 3689291..3690094 | - | 804 | WP_128579428.1 | IS21 family transposase ISPman1 | Transposase |
| LS633_RS17070 (LS633_17070) | 3690087..3691586 | - | 1500 | WP_169840072.1 | IS21 family transposase ISPpu27 | Transposase |
| LS633_RS17075 (LS633_17075) | 3691814..3693379 | + | 1566 | WP_047283017.1 | Aerotaxis receptor | VF |
| LS633_RS17080 (LS633_17080) | 3693416..3695146 | + | 1731 | WP_232391552.1 | putative signaling protein | VF |
| LS633_RS17085 (LS633_17085) | 3695356..3695625 | + | 270 | WP_011077892.1 | hypothetical protein | - |
| LS633_RS17090 (LS633_17090) | 3695769..3696044 | - | 276 | WP_016502317.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LS633_RS17095 (LS633_17095) | 3696044..3696316 | - | 273 | WP_016502318.1 | ribbon-helix-helix domain-containing protein | Antitoxin Detail |
| LS633_RS17100 (LS633_17100) | 3696330..3696743 | - | 414 | WP_016502319.1 | hypothetical protein | - |
| LS633_RS17105 (LS633_17105) | 3696750..3697490 | - | 741 | WP_232391553.1 | DUF2807 domain-containing protein | - |
| LS633_RS17110 (LS633_17110) | 3697744..3698178 | + | 435 | WP_126624766.1 | hypothetical protein | - |
| LS633_RS17115 (LS633_17115) | 3698261..3698821 | + | 561 | WP_048388137.1 | Tn3 family transposase TnpR_ISPa40 | Transposase |
| LS633_RS17120 (LS633_17120) | 3698825..3701791 | + | 2967 | WP_232391554.1 | Tn3 family transposase TnpA_ISPa40 | Transposase |
| LS633_RS17125 (LS633_17125) | 3701815..3702024 | - | 210 | Protein_3364 | IS66 family transposase ISSal1 | Transposase |
| LS633_RS17130 (LS633_17130) | 3702086..3702421 | - | 336 | WP_232391555.1 | IS66 family transposase ISPpu14 | Transposase |
| LS633_RS17135 (LS633_17135) | 3702418..3702741 | - | 324 | WP_232391556.1 | IS66 family transposase ISPpu30 | Transposase |
| LS633_RS17140 (LS633_17140) | 3702845..3703012 | - | 168 | Protein_3367 | IS5/IS1182 family transposase | - |
| LS633_RS17145 (LS633_17145) | 3703175..3703603 | - | 429 | WP_232391557.1 | TetR family transcriptional regulator | - |
| LS633_RS17150 (LS633_17150) | 3703600..3705483 | - | 1884 | WP_232391558.1 | hypothetical protein ; Integrase | Integrase |
| LS633_RS17155 (LS633_17155) | 3705480..3707159 | - | 1680 | WP_232391559.1 | hypothetical protein | - |
| LS633_RS17160 (LS633_17160) | 3707159..3708307 | - | 1149 | WP_232391560.1 | Tyrosine recombinase XerH ; Integrase | Integrase |
| LS633_RS17165 (LS633_17165) | 3709139..3709606 | - | 468 | WP_232391561.1 | Rha family transcriptional regulator | - |
| LS633_RS17170 (LS633_17170) | 3709609..3709914 | - | 306 | WP_232391562.1 | hypothetical protein | - |
| LS633_RS17175 (LS633_17175) | 3710163..3711173 | - | 1011 | WP_232391563.1 | hypothetical protein | - |
| LS633_RS17180 (LS633_17180) | 3711227..3711625 | - | 399 | WP_232391564.1 | hypothetical protein | - |
| LS633_RS17185 (LS633_17185) | 3713378..3714673 | - | 1296 | WP_232391565.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LS633_RS17190 (LS633_17190) | 3714901..3715398 | - | 498 | WP_232391566.1 | DUF6231 family protein | - |
| LS633_RS17195 (LS633_17195) | 3715598..3716293 | + | 696 | WP_042557964.1 | OmpA family protein | - |
| LS633_RS17200 (LS633_17200) | 3716383..3717104 | + | 722 | Protein_3379 | OmpA family protein | - |
| LS633_RS17205 (LS633_17205) | 3717268..3717549 | + | 282 | WP_150618042.1 | DUF1145 domain-containing protein | - |
| LS633_RS17210 (LS633_17210) | 3717542..3718300 | + | 759 | WP_210702406.1 | collagen-like protein | - |
| LS633_RS17215 (LS633_17215) | 3718508..3718972 | - | 465 | WP_210702405.1 | CopD family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|