MGE detailed information
MGE type: Genomic_island MGE length: 26803 bp
Accession: NZ_CP089304 Location: 1362833..1389635 Organism: Pseudomonas sp. NIBR-H-19 Replicon: chromosome
Accession: NZ_CP089304 Location: 1362833..1389635 Organism: Pseudomonas sp. NIBR-H-19 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LS633_RS06455 (LS633_06455) | 1358846..1360066 | - | 1221 | WP_038443637.1 | cytochrome c | - |
| LS633_RS06460 (LS633_06460) | 1360077..1362269 | - | 2193 | WP_010562383.1 | molybdopterin-dependent oxidoreductase | - |
| LS633_RS06465 (LS633_06465) | 1362271..1362732 | - | 462 | WP_010562382.1 | (2Fe-2S)-binding protein | - |
| LS633_RS06470 (LS633_06470) | 1363195..1364229 | - | 1035 | WP_010562380.1 | NADP-dependent oxidoreductase | - |
| LS633_RS06475 (LS633_06475) | 1364349..1364942 | - | 594 | WP_010562379.1 | TetR/AcrR family transcriptional regulator | - |
| LS633_RS06480 (LS633_06480) | 1365346..1365969 | + | 624 | WP_169878815.1 | glutathione S-transferase | - |
| LS633_RS06485 (LS633_06485) | 1366409..1366564 | + | 156 | Protein_1269 | IS5/IS1182 family transposase | - |
| LS633_RS06490 (LS633_06490) | 1366787..1367194 | - | 408 | WP_010562376.1 | carboxymuconolactone decarboxylase family protein | - |
| LS633_RS06495 (LS633_06495) | 1367245..1368108 | + | 864 | WP_232392561.1 | TetR/AcrR family transcriptional regulator | - |
| LS633_RS06500 (LS633_06500) | 1368523..1370163 | - | 1641 | WP_232392562.1 | MFS transporter | - |
| LS633_RS06505 (LS633_06505) | 1370160..1371212 | - | 1053 | WP_232392563.1 | putative multidrug resistance protein EmrK | VF |
| LS633_RS06510 (LS633_06510) | 1371568..1371897 | + | 330 | WP_038443644.1 | hypothetical protein | - |
| LS633_RS06515 (LS633_06515) | 1371969..1372937 | + | 969 | WP_232392564.1 | DUF932 domain-containing protein | - |
| LS633_RS06520 (LS633_06520) | 1373018..1374022 | + | 1005 | WP_232392565.1 | YqaJ viral recombinase family protein | - |
| LS633_RS06525 (LS633_06525) | 1374129..1375040 | + | 912 | WP_232392566.1 | hydrolase or metal-binding protein | - |
| LS633_RS06530 (LS633_06530) | 1375082..1375579 | + | 498 | WP_232392567.1 | DNA repair protein RadC | - |
| LS633_RS06535 (LS633_06535) | 1375813..1376115 | + | 303 | WP_232392568.1 | hypothetical protein | - |
| LS633_RS06540 (LS633_06540) | 1376164..1378929 | - | 2766 | WP_232392569.1 | DUF499 domain-containing protein | - |
| LS633_RS06545 (LS633_06545) | 1379114..1382011 | - | 2898 | WP_232392570.1 | DUF1156 domain-containing protein | - |
| LS633_RS06550 (LS633_06550) | 1382008..1382733 | - | 726 | WP_232392571.1 | retron system putative HNH endonuclease | - |
| LS633_RS06555 (LS633_06555) | 1382730..1384106 | - | 1377 | WP_232392572.1 | AAA family ATPase | - |
| LS633_RS06560 (LS633_06560) | 1384103..1384570 | - | 468 | WP_232392846.1 | DUF3883 domain-containing protein | - |
| LS633_RS06565 (LS633_06565) | 1384567..1387635 | - | 3069 | WP_232392573.1 | helicase-related protein | - |
| LS633_RS06570 (LS633_06570) | 1387635..1388564 | - | 930 | WP_232392574.1 | WYL domain-containing protein | - |
| LS633_RS06575 (LS633_06575) | 1389110..1389349 | + | 240 | WP_016984130.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LS633_RS06580 (LS633_06580) | 1389339..1389635 | + | 297 | WP_210704192.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LS633_RS06585 (LS633_06585) | 1389690..1390502 | - | 813 | WP_210704193.1 | DUF2135 domain-containing protein | - |
| LS633_RS06590 (LS633_06590) | 1390506..1392125 | - | 1620 | WP_210704194.1 | DUF2300 domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|