MGE detailed information
MGE type: IScluster/Tn MGE length: 13727 bp
Accession: NZ_CP089282 Location: 6003957..6017683 Organism: Pseudomonas amygdali pv. loropetali strain AAC Replicon: chromosome
Accession: NZ_CP089282 Location: 6003957..6017683 Organism: Pseudomonas amygdali pv. loropetali strain AAC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT107_RS27055 (LT107_27055) | 5999872..6000279 | + | 408 | WP_002555828.1 | S4 domain-containing protein | - |
| LT107_RS27060 (LT107_27060) | 6000451..6001353 | + | 903 | WP_044345705.1 | Hsp33 family molecular chaperone HslO | - |
| LT107_RS27065 (LT107_27065) | 6001533..6003077 | + | 1545 | WP_054071597.1 | phosphoenolpyruvate carboxykinase | - |
| LT107_RS27070 (LT107_27070) | 6003223..6003408 | - | 186 | WP_005734566.1 | T6SS amidase immunity protein Tai4 family protein | - |
| LT107_RS27075 (LT107_27075) | 6003463..6003810 | - | 348 | Protein_5336 | hypothetical protein | - |
| LT107_RS27080 (LT107_27080) | 6003957..6004937 | - | 981 | WP_054991743.1 | IS5 family transposase ISPsy2 | Transposase |
| LT107_RS27085 (LT107_27085) | 6005089..6005643 | - | 555 | Protein_5338 | DUF6402 family protein | - |
| LT107_RS27090 (LT107_27090) | 6005845..6006419 | + | 575 | Protein_5339 | IS5 family transposase ISPsp10 | Transposase |
| LT107_RS27095 (LT107_27095) | 6006588..6006896 | + | 309 | WP_044322586.1 | putative quinol monooxygenase | - |
| LT107_RS27100 (LT107_27100) | 6006949..6007317 | + | 369 | WP_019331435.1 | hypothetical protein | - |
| LT107_RS27105 (LT107_27105) | 6007594..6007836 | + | 243 | WP_057434042.1 | hypothetical protein | - |
| LT107_RS27110 (LT107_27110) | 6007850..6008050 | + | 201 | WP_019331437.1 | hypothetical protein | - |
| LT107_RS27115 (LT107_27115) | 6008047..6008268 | + | 222 | WP_060406754.1 | hypothetical protein | - |
| LT107_RS27120 (LT107_27120) | 6008594..6009214 | - | 621 | WP_005747119.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LT107_RS27125 (LT107_27125) | 6009524..6010144 | - | 621 | WP_243787600.1 | hypothetical protein | - |
| LT107_RS27130 (LT107_27130) | 6010469..6011224 | - | 756 | WP_057412162.1 | IS21 family transposase ISPsy41 | Transposase |
| LT107_RS27135 (LT107_27135) | 6011245..6012759 | - | 1515 | WP_057412163.1 | IS21 family transposase ISPsy14 | Transposase |
| LT107_RS27140 (LT107_27140) | 6013076..6013414 | + | 339 | WP_243787582.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LT107_RS27145 (LT107_27145) | 6013414..6013701 | + | 288 | WP_005622028.1 | XRE family transcriptional regulator | - |
| LT107_RS27150 (LT107_27150) | 6013763..6014215 | + | 453 | WP_243787581.1 | TrfB-related DNA-binding protein | - |
| LT107_RS27155 (LT107_27155) | 6014233..6014946 | - | 714 | WP_248583754.1 | YecA family protein | - |
| LT107_RS27160 (LT107_27160) | 6015050..6015322 | - | 273 | WP_004662083.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LT107_RS27165 (LT107_27165) | 6015312..6015497 | - | 186 | WP_003381808.1 | hypothetical protein | Antitoxin Detail |
| LT107_RS27170 (LT107_27170) | 6015548..6015826 | - | 279 | WP_004667962.1 | hypothetical protein | - |
| LT107_RS27175 (LT107_27175) | 6015921..6016295 | - | 375 | Protein_5356 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LT107_RS27180 (LT107_27180) | 6016475..6017683 | - | 1209 | WP_248583755.1 | IS91 family transposase IS801 | Transposase |
| LT107_RS27185 (LT107_27185) | 6017685..6017966 | - | 282 | WP_248583756.1 | hypothetical protein | - |
| LT107_RS27190 (LT107_27190) | 6018278..6018547 | + | 270 | Protein_5359 | hypothetical protein | - |
| LT107_RS27195 (LT107_27195) | 6018663..6021194 | + | 2532 | WP_243787508.1 | hypothetical protein | - |
| LT107_RS27200 (LT107_27200) | 6021175..6021315 | - | 141 | Protein_5361 | ATP-binding protein | - |
| LT107_RS27205 (LT107_27205) | 6021377..6021682 | - | 306 | WP_243787509.1 | nucleotide-binding protein | - |
| LT107_RS27210 (LT107_27210) | 6022189..6022437 | + | 249 | WP_248583757.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|