MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 88008 bp
Accession: NZ_CP089282 Location: 585232..673239 Organism: Pseudomonas amygdali pv. loropetali strain AAC Replicon: chromosome
Accession: NZ_CP089282 Location: 585232..673239 Organism: Pseudomonas amygdali pv. loropetali strain AAC Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LT107_RS02635 (LT107_02635) | 580434..581162 | + | 729 | WP_044319538.1 | peptidoglycan editing factor PgeF | - |
| LT107_RS02640 (LT107_02640) | 581334..583898 | + | 2565 | WP_243786958.1 | ATP-dependent chaperone ClpB | - |
| LT107_RS02665 (LT107_02665) | 584942..586396 | - | 1455 | WP_243786957.1 | site-specific integrase | - |
| LT107_RS02670 (LT107_02670) | 586393..588324 | - | 1932 | WP_243786956.1 | MobH family relaxase | - |
| LT107_RS02675 (LT107_02675) | 588949..589971 | + | 1023 | WP_005746549.1 | alcohol dehydrogenase catalytic domain-containing protein | - |
| LT107_RS02680 (LT107_02680) | 590065..590739 | + | 675 | WP_005746550.1 | dihydrofolate reductase family protein | - |
| LT107_RS02685 (LT107_02685) | 590739..591392 | + | 654 | WP_005746551.1 | HAD family phosphatase | - |
| LT107_RS02690 (LT107_02690) | 591394..591996 | + | 603 | WP_005746552.1 | DUF1349 domain-containing protein | - |
| LT107_RS02695 (LT107_02695) | 592017..593210 | + | 1194 | WP_005746553.1 | MFS transporter | - |
| LT107_RS02700 (LT107_02700) | 593346..593561 | + | 216 | Protein_524 | hypothetical protein | - |
| LT107_RS02705 (LT107_02705) | 593805..594191 | + | 387 | WP_248583768.1 | DUF3742 family protein | - |
| LT107_RS02710 (LT107_02710) | 594231..595496 | - | 1266 | Protein_526 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LT107_RS02715 (LT107_02715) | 595538..595984 | - | 447 | WP_054071054.1 | GNAT family N-acetyltransferase | - |
| LT107_RS02720 (LT107_02720) | 596051..597577 | - | 1527 | WP_122321189.1 | IS66 family transposase ISPpu30 | Transposase |
| LT107_RS02725 (LT107_02725) | 597628..597963 | - | 336 | WP_054070825.1 | IS66 family transposase ISSal1 | Transposase |
| LT107_RS02730 (LT107_02730) | 598376..598666 | - | 291 | Protein_530 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| LT107_RS02735 (LT107_02735) | 598663..599037 | - | 375 | WP_057454189.1 | hypothetical protein | - |
| LT107_RS02740 (LT107_02740) | 599040..600431 | - | 1392 | WP_162305742.1 | integrating conjugative element protein | - |
| LT107_RS02745 (LT107_02745) | 600428..601366 | - | 939 | WP_243787122.1 | TIGR03756 family integrating conjugative element protein | - |
| LT107_RS02750 (LT107_02750) | 601363..601839 | - | 477 | WP_243787123.1 | TIGR03757 family integrating conjugative element protein | - |
| LT107_RS02755 (LT107_02755) | 601975..603081 | - | 1107 | WP_243787124.1 | hypothetical protein | - |
| LT107_RS02760 (LT107_02760) | 603483..604856 | - | 1374 | WP_243787141.1 | IS1182 family transposase ISCfr1 | Transposase |
| LT107_RS02765 (LT107_02765) | 605326..607038 | - | 1713 | WP_243787125.1 | ATP-dependent helicase | - |
| LT107_RS02770 (LT107_02770) | 607035..608915 | - | 1881 | WP_243787126.1 | AAA family ATPase | - |
| LT107_RS02775 (LT107_02775) | 609048..609320 | - | 273 | WP_243787127.1 | hypothetical protein | - |
| LT107_RS02780 (LT107_02780) | 609321..610013 | - | 693 | WP_243787128.1 | DsbA family protein | - |
| LT107_RS02785 (LT107_02785) | 610010..610309 | - | 300 | WP_004662717.1 | hypothetical protein | - |
| LT107_RS02790 (LT107_02790) | 610306..613263 | - | 2958 | WP_243787129.1 | conjugative transfer ATPase | - |
| LT107_RS02795 (LT107_02795) | 613263..613724 | - | 462 | WP_243787130.1 | TIGR03751 family conjugal transfer lipoprotein | - |
| LT107_RS02800 (LT107_02800) | 613702..615198 | - | 1497 | WP_243787131.1 | TIGR03752 family integrating conjugative element protein | - |
| LT107_RS02805 (LT107_02805) | 615188..616111 | - | 924 | WP_243787132.1 | TIGR03749 family integrating conjugative element protein | - |
| LT107_RS02810 (LT107_02810) | 616108..616776 | - | 669 | WP_243787133.1 | TIGR03746 family integrating conjugative element protein | - |
| LT107_RS02815 (LT107_02815) | 616773..617165 | - | 393 | WP_024670972.1 | TIGR03750 family conjugal transfer protein | - |
| LT107_RS02820 (LT107_02820) | 617181..617549 | - | 369 | WP_003347754.1 | TIGR03745 family integrating conjugative element membrane protein | - |
| LT107_RS02825 (LT107_02825) | 617569..617808 | - | 240 | WP_005740038.1 | TIGR03758 family integrating conjugative element protein | - |
| LT107_RS02830 (LT107_02830) | 617805..618104 | - | 300 | WP_010219771.1 | RAQPRD family integrative conjugative element protein | - |
| LT107_RS02835 (LT107_02835) | 618250..618582 | - | 333 | WP_243787134.1 | DUF4177 domain-containing protein | - |
| LT107_RS02840 (LT107_02840) | 618752..619183 | + | 432 | WP_243787135.1 | hypothetical protein | - |
| LT107_RS02845 (LT107_02845) | 619211..620668 | - | 1458 | WP_243787142.1 | UvrD-helicase domain-containing protein | - |
| LT107_RS02850 (LT107_02850) | 620678..621427 | - | 750 | WP_003425101.1 | TIGR03747 family integrating conjugative element membrane protein | - |
| LT107_RS02855 (LT107_02855) | 621467..623626 | - | 2160 | WP_003317504.1 | type IV conjugative transfer system coupling protein TraD | - |
| LT107_RS02860 (LT107_02860) | 623638..624144 | - | 507 | WP_243787136.1 | integrating conjugative element protein | - |
| LT107_RS02865 (LT107_02865) | 624141..624698 | - | 558 | WP_005734357.1 | hypothetical protein | VF |
| LT107_RS02870 (LT107_02870) | 624683..625429 | - | 747 | WP_243787137.1 | TIGR03759 family integrating conjugative element protein | - |
| LT107_RS02875 (LT107_02875) | 625438..626148 | - | 711 | WP_243787138.1 | hypothetical protein | - |
| LT107_RS02880 (LT107_02880) | 627148..628941 | + | 1794 | WP_243787139.1 | DNA methyltransferase | - |
| LT107_RS02885 (LT107_02885) | 628938..630989 | + | 2052 | WP_243787140.1 | N-6 DNA methylase | - |
| LT107_RS02890 (LT107_02890) | 631000..634248 | + | 3249 | WP_243787143.1 | DUF1842 domain-containing protein | - |
| LT107_RS02895 (LT107_02895) | 634494..634754 | - | 261 | Protein_563 | TIGR03759 family integrating conjugative element protein | - |
| LT107_RS02900 (LT107_02900) | 635004..635428 | + | 425 | Protein_564 | IS3 family transposase IS51 | Transposase |
| LT107_RS02905 (LT107_02905) | 635481..635927 | - | 447 | WP_054071054.1 | GNAT family N-acetyltransferase | - |
| LT107_RS02910 (LT107_02910) | 635994..637520 | - | 1527 | WP_122321189.1 | IS66 family transposase ISPpu30 | Transposase |
| LT107_RS02915 (LT107_02915) | 637571..637906 | - | 336 | WP_054070825.1 | IS66 family transposase ISSal1 | Transposase |
| LT107_RS02920 (LT107_02920) | 637903..638220 | - | 318 | WP_005747240.1 | IS66 family transposase ISPpu14 | Transposase |
| LT107_RS02925 (LT107_02925) | 638760..645521 | - | 6762 | WP_248583769.1 | XopAD/skwp family type III secretion system effector | - |
| LT107_RS02930 (LT107_02930) | 646057..646689 | - | 633 | WP_248583770.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
| LT107_RS02935 (LT107_02935) | 646730..647149 | - | 420 | WP_243787630.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LT107_RS02940 (LT107_02940) | 647146..647484 | - | 339 | WP_279578836.1 | Arc family DNA-binding protein | Antitoxin Detail |
| LT107_RS02945 (LT107_02945) | 648152..648598 | - | 447 | WP_054071054.1 | GNAT family N-acetyltransferase | - |
| LT107_RS02950 (LT107_02950) | 648665..650191 | - | 1527 | WP_122321189.1 | IS66 family transposase ISPpu30 | Transposase |
| LT107_RS02955 (LT107_02955) | 650242..650577 | - | 336 | WP_054070825.1 | IS66 family transposase ISSal1 | Transposase |
| LT107_RS02960 (LT107_02960) | 650574..650891 | - | 318 | WP_005747240.1 | IS66 family transposase ISPpu14 | Transposase |
| LT107_RS02965 (LT107_02965) | 650991..651794 | + | 804 | Protein_577 | IS3 family transposase IS51 | Transposase |
| LT107_RS02970 (LT107_02970) | 652105..653904 | - | 1800 | WP_248583771.1 | ATP-dependent helicase | - |
| LT107_RS02975 (LT107_02975) | 653906..656041 | - | 2136 | WP_248583772.1 | AAA family ATPase | - |
| LT107_RS02980 (LT107_02980) | 656955..659213 | - | 2259 | WP_080164476.1 | DEAD/DEAH box helicase | - |
| LT107_RS02985 (LT107_02985) | 659321..660772 | - | 1452 | WP_080164477.1 | DUF6094 domain-containing protein | - |
| LT107_RS02990 (LT107_02990) | 660741..661391 | - | 651 | WP_243787426.1 | hypothetical protein | - |
| LT107_RS02995 (LT107_02995) | 661458..661982 | - | 525 | WP_003425083.1 | hypothetical protein | - |
| LT107_RS03000 (LT107_03000) | 662071..662682 | - | 612 | WP_248583773.1 | DUF3275 family protein | - |
| LT107_RS03005 (LT107_03005) | 662778..663113 | - | 336 | WP_181013310.1 | hypothetical protein | - |
| LT107_RS03010 (LT107_03010) | 663230..663517 | - | 288 | WP_243787410.1 | hypothetical protein | - |
| LT107_RS03015 (LT107_03015) | 663588..663743 | - | 156 | WP_243787411.1 | hypothetical protein | - |
| LT107_RS03020 (LT107_03020) | 663814..664386 | - | 573 | WP_243787412.1 | STY4534 family ICE replication protein | - |
| LT107_RS03025 (LT107_03025) | 664483..664701 | - | 219 | WP_005740009.1 | hypothetical protein | - |
| LT107_RS03030 (LT107_03030) | 664899..665432 | - | 534 | WP_243787413.1 | regulator | - |
| LT107_RS03035 (LT107_03035) | 666506..668527 | - | 2022 | WP_243787414.1 | DNA topoisomerase III | - |
| LT107_RS03040 (LT107_03040) | 668650..669219 | - | 570 | WP_044423352.1 | hypothetical protein | VF |
| LT107_RS03045 (LT107_03045) | 669826..670446 | + | 621 | WP_243787415.1 | hypothetical protein | - |
| LT107_RS03050 (LT107_03050) | 670604..671584 | - | 981 | WP_248583802.1 | IS5 family transposase ISPsy2 | Transposase |
| LT107_RS03055 (LT107_03055) | 671966..673918 | - | 1953 | WP_248583774.1 | DEAD/DEAH box helicase | - |
| LT107_RS03060 (LT107_03060) | 673921..675486 | - | 1566 | WP_248583775.1 | hypothetical protein | - |
| LT107_RS03065 (LT107_03065) | 676043..676330 | - | 288 | WP_005739997.1 | hypothetical protein | - |
| LT107_RS03070 (LT107_03070) | 676451..676651 | - | 201 | WP_248583776.1 | hypothetical protein | - |
| LT107_RS03075 (LT107_03075) | 676661..677125 | - | 465 | WP_055003405.1 | single-stranded DNA-binding protein | - |
| LT107_RS03080 (LT107_03080) | 677136..677969 | - | 834 | WP_080164487.1 | Rha family transcriptional regulator | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|