MGE detailed information
MGE type: Genomic_island MGE length: 29421 bp
Accession: NZ_CP088923 Location: 1005891..1035311 Organism: Rhodanobacter thiooxydans strain FW510-R12 Replicon: chromosome
Accession: NZ_CP088923 Location: 1005891..1035311 Organism: Rhodanobacter thiooxydans strain FW510-R12 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRK53_RS04310 (LRK53_04310) | 1001434..1001661 | + | 228 | WP_027492953.1 | YdcH family protein | - |
| LRK53_RS04315 (LRK53_04315) | 1001808..1003178 | + | 1371 | WP_235642525.1 | pyridoxal-phosphate dependent enzyme | - |
| LRK53_RS04320 (LRK53_04320) | 1003479..1005308 | + | 1830 | WP_027492955.1 | glutamine--fructose-6-phosphate transaminase (isomerizing) | - |
| LRK53_RS04325 (LRK53_04325) | 1005610..1005894 | + | 285 | WP_027492956.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| LRK53_RS04330 (LRK53_04330) | 1005891..1006058 | + | 168 | WP_235642526.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LRK53_RS04335 (LRK53_04335) | 1006854..1007381 | - | 528 | WP_027492957.1 | hypothetical protein | Toxin Detail |
| LRK53_RS04340 (LRK53_04340) | 1007378..1007656 | - | 279 | WP_027492958.1 | DUF1778 domain-containing protein | Antitoxin Detail |
| LRK53_RS04345 (LRK53_04345) | 1007974..1009386 | - | 1413 | WP_027492959.1 | hypothetical protein | VF |
| LRK53_RS04350 (LRK53_04350) | 1009577..1010527 | - | 951 | WP_027492960.1 | dTDP-4-dehydrorhamnose reductase | - |
| LRK53_RS04355 (LRK53_04355) | 1010524..1011081 | - | 558 | WP_027492961.1 | hypothetical protein | VF |
| LRK53_RS04360 (LRK53_04360) | 1011078..1011968 | - | 891 | WP_027492962.1 | Glucose-1-phosphate adenylyltransferase | VF |
| LRK53_RS04365 (LRK53_04365) | 1011965..1013035 | - | 1071 | WP_027492963.1 | GDP-mannose 4,6-dehydratase | VF |
| LRK53_RS19200 | 1013199..1013333 | + | 135 | WP_255324876.1 | hypothetical protein | - |
| LRK53_RS04370 (LRK53_04370) | 1013308..1014474 | + | 1167 | WP_027492964.1 | cystathionine gamma-synthase | - |
| LRK53_RS04375 (LRK53_04375) | 1014570..1015328 | + | 759 | WP_235642646.1 | ABC transporter permease | - |
| LRK53_RS04380 (LRK53_04380) | 1015318..1016667 | + | 1350 | WP_027492966.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LRK53_RS04385 (LRK53_04385) | 1016657..1018543 | + | 1887 | WP_221174210.1 | class I SAM-dependent methyltransferase | - |
| LRK53_RS04390 (LRK53_04390) | 1018663..1020996 | + | 2334 | WP_221174211.1 | hypothetical protein | VF |
| LRK53_RS04395 (LRK53_04395) | 1021081..1021656 | - | 576 | WP_185754642.1 | hypothetical protein | - |
| LRK53_RS04400 (LRK53_04400) | 1021919..1024573 | + | 2655 | WP_185754643.1 | hypothetical protein | - |
| LRK53_RS04405 (LRK53_04405) | 1024570..1025763 | + | 1194 | WP_027492970.1 | glycosyltransferase | - |
| LRK53_RS04410 (LRK53_04410) | 1025760..1026137 | + | 378 | WP_027492971.1 | hypothetical protein | - |
| LRK53_RS04415 (LRK53_04415) | 1026354..1027469 | - | 1116 | WP_037089808.1 | UDP-N-acetylglucosamine 2-epimerase | VF |
| LRK53_RS04420 (LRK53_04420) | 1027474..1028490 | - | 1017 | WP_027492973.1 | GDP-L-fucose synthase | VF |
| LRK53_RS04425 (LRK53_04425) | 1028508..1029362 | - | 855 | WP_027492974.1 | SDR family oxidoreductase | - |
| LRK53_RS04430 (LRK53_04430) | 1029359..1030405 | - | 1047 | WP_051257578.1 | glycosyltransferase family 2 protein | - |
| LRK53_RS04435 (LRK53_04435) | 1030551..1031495 | - | 945 | WP_027492976.1 | electron transfer flavoprotein subunit alpha/FixB family protein | - |
| LRK53_RS04440 (LRK53_04440) | 1031612..1032358 | - | 747 | WP_027492977.1 | electron transfer flavoprotein subunit beta/FixA family protein | - |
| LRK53_RS04445 (LRK53_04445) | 1032470..1034530 | - | 2061 | WP_235642527.1 | glycoside hydrolase family 99-like domain-containing protein | - |
| LRK53_RS04450 (LRK53_04450) | 1034674..1035015 | - | 342 | WP_068098599.1 | transcriptional regulator | - |
| LRK53_RS04455 (LRK53_04455) | 1035012..1035299 | - | 288 | WP_037089741.1 | DUF6516 family protein | - |
| LRK53_RS04460 (LRK53_04460) | 1035457..1037436 | - | 1980 | WP_051257573.1 | glycosyltransferase | - |
| LRK53_RS04465 (LRK53_04465) | 1037561..1037854 | - | 294 | WP_027492805.1 | HigA family addiction module antitoxin | - |
| LRK53_RS04470 (LRK53_04470) | 1037854..1038132 | - | 279 | WP_027492806.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| LRK53_RS04475 (LRK53_04475) | 1038235..1039845 | - | 1611 | WP_037089743.1 | electron transfer flavoprotein-ubiquinone oxidoreductase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|