MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 146980 bp
Accession: NZ_CP088273 Location: 2494305..2641284 Organism: Phyllobacterium sp. T1293 Replicon: chromosome
Accession: NZ_CP088273 Location: 2494305..2641284 Organism: Phyllobacterium sp. T1293 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LLE53_RS12270 (LLE53_012270) | 2489619..2489930 | - | 312 | WP_227987282.1 | hypothetical protein | - |
| LLE53_RS12275 (LLE53_012275) | 2490520..2491371 | - | 852 | WP_227987283.1 | alpha/beta hydrolase | - |
| LLE53_RS12280 (LLE53_012280) | 2491459..2493015 | - | 1557 | WP_112528726.1 | MDR family MFS transporter | - |
| LLE53_RS12285 (LLE53_012285) | 2493134..2493646 | + | 513 | WP_091878564.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| LLE53_RS12290 (LLE53_012290) | 2493650..2494657 | - | 1008 | WP_227987284.1 | AI-2E family transporter | - |
| LLE53_RS12295 (LLE53_012295) | 2494845..2496197 | + | 1353 | WP_227987285.1 | Multidrug resistance protein MdtA | VF |
| LLE53_RS12300 (LLE53_012300) | 2496194..2499304 | + | 3111 | WP_227987286.1 | efflux RND transporter permease subunit | - |
| LLE53_RS12305 (LLE53_012305) | 2499301..2502399 | + | 3099 | WP_112528717.1 | Multidrug resistance protein MdtC | VF |
| LLE53_RS12310 (LLE53_012310) | 2502505..2502654 | + | 150 | WP_162700273.1 | hypothetical protein | - |
| LLE53_RS12315 (LLE53_012315) | 2502663..2502845 | - | 183 | WP_112528715.1 | hypothetical protein | - |
| LLE53_RS12320 (LLE53_012320) | 2503149..2504075 | + | 927 | WP_112528713.1 | transglutaminase family protein | - |
| LLE53_RS12325 (LLE53_012325) | 2504288..2504554 | + | 267 | WP_112528711.1 | hypothetical protein | - |
| LLE53_RS12330 (LLE53_012330) | 2504858..2505970 | - | 1113 | WP_227988204.1 | ABC transporter substrate-binding protein | - |
| LLE53_RS12335 (LLE53_012335) | 2505991..2507154 | - | 1164 | WP_227987287.1 | CaiB/BaiF CoA-transferase family protein | - |
| LLE53_RS12340 (LLE53_012340) | 2507154..2507705 | - | 552 | WP_112528834.1 | MaoC family dehydratase | - |
| LLE53_RS12345 (LLE53_012345) | 2507922..2508920 | - | 999 | WP_182508980.1 | glutathione S-transferase family protein | - |
| LLE53_RS12350 (LLE53_012350) | 2509014..2510687 | - | 1674 | WP_227987288.1 | dihydroxy-acid dehydratase | - |
| LLE53_RS12355 (LLE53_012355) | 2510814..2511722 | + | 909 | WP_227987289.1 | LysR family transcriptional regulator | - |
| LLE53_RS12360 (LLE53_012360) | 2511706..2512941 | - | 1236 | WP_227988205.1 | lytic murein transglycosylase | - |
| LLE53_RS12365 (LLE53_012365) | 2512966..2513571 | - | 606 | WP_112528699.1 | recombination mediator RecR | - |
| LLE53_RS12370 (LLE53_012370) | 2514003..2514326 | - | 324 | WP_112528697.1 | YbaB/EbfC family nucleoid-associated protein | - |
| LLE53_RS12375 (LLE53_012375) | 2514345..2516207 | - | 1863 | WP_112528695.1 | DNA polymerase III subunit gamma/tau | - |
| LLE53_RS12385 (LLE53_012385) | 2516446..2516850 | + | 405 | WP_091880083.1 | HIT family protein | - |
| LLE53_RS12390 (LLE53_012390) | 2516904..2517848 | + | 945 | WP_227987290.1 | NAD(+) diphosphatase | - |
| LLE53_RS12395 (LLE53_012395) | 2518831..2519691 | - | 861 | WP_182508984.1 | prephenate dehydratase | - |
| LLE53_RS12400 (LLE53_012400) | 2519694..2520434 | - | 741 | WP_113095007.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | VF |
| LLE53_RS12405 (LLE53_012405) | 2520613..2521248 | + | 636 | WP_091878592.1 | cytochrome c family protein | - |
| LLE53_RS12410 (LLE53_012410) | 2521455..2523287 | + | 1833 | WP_227988206.1 | extracellular solute-binding protein | - |
| LLE53_RS12415 (LLE53_012415) | 2523284..2525161 | + | 1878 | WP_227987291.1 | extracellular solute-binding protein | - |
| LLE53_RS12420 (LLE53_012420) | 2525192..2526295 | + | 1104 | WP_091878596.1 | microcin C ABC transporter permease YejB | - |
| LLE53_RS12425 (LLE53_012425) | 2526295..2527440 | + | 1146 | WP_112523348.1 | ABC transporter permease | - |
| LLE53_RS12430 (LLE53_012430) | 2527437..2529068 | + | 1632 | WP_227987292.1 | putative ABC transporter ATP-binding protein YejF | VF |
| LLE53_RS12435 (LLE53_012435) | 2529065..2530021 | + | 957 | WP_227987293.1 | glyoxylate/hydroxypyruvate reductase A | - |
| LLE53_RS12440 (LLE53_012440) | 2530312..2530803 | + | 492 | WP_112523357.1 | 6,7-dimethyl-8-ribityllumazine synthase | - |
| LLE53_RS12445 (LLE53_012445) | 2531013..2531870 | - | 858 | WP_162730143.1 | NlpC/P60 family protein | - |
| LLE53_RS12450 (LLE53_012450) | 2531867..2532217 | - | 351 | WP_112523363.1 | MarR family transcriptional regulator | - |
| LLE53_RS12455 (LLE53_012455) | 2532338..2532967 | + | 630 | WP_182508988.1 | chloramphenicol phosphotransferase | - |
| LLE53_RS12460 (LLE53_012460) | 2532979..2534352 | - | 1374 | WP_113095011.1 | leucyl aminopeptidase family protein | - |
| LLE53_RS12465 (LLE53_012465) | 2534500..2535330 | + | 831 | WP_227987294.1 | tetratricopeptide repeat protein | - |
| LLE53_RS12470 (LLE53_012470) | 2535376..2536401 | - | 1026 | WP_227987295.1 | hypothetical protein | VF |
| LLE53_RS12475 (LLE53_012475) | 2536416..2537429 | - | 1014 | WP_227987296.1 | type II secretion system F family protein | - |
| LLE53_RS12480 (LLE53_012480) | 2537457..2538926 | - | 1470 | WP_112523377.1 | Putative conjugal transfer protein | VF |
| LLE53_RS12485 (LLE53_012485) | 2538945..2540228 | - | 1284 | WP_227987297.1 | CpaE family protein | - |
| LLE53_RS12490 (LLE53_012490) | 2540269..2540964 | - | 696 | WP_227987298.1 | CpaD family pilus assembly protein | - |
| LLE53_RS12495 (LLE53_012495) | 2540961..2542436 | - | 1476 | WP_227988207.1 | type II and III secretion system protein family protein | - |
| LLE53_RS12500 (LLE53_012500) | 2542543..2543346 | - | 804 | WP_112523382.1 | hypothetical protein | VF |
| LLE53_RS12505 (LLE53_012505) | 2543535..2544059 | - | 525 | WP_113095014.1 | prepilin peptidase | - |
| LLE53_RS12510 (LLE53_012510) | 2544109..2544315 | - | 207 | WP_112523387.1 | Flp family type IVb pilin | - |
| LLE53_RS12515 (LLE53_012515) | 2544577..2544996 | + | 420 | WP_227987299.1 | pilus assembly protein N-terminal domain-containing protein | - |
| LLE53_RS12520 (LLE53_012520) | 2545215..2545730 | + | 516 | WP_112523390.1 | pilus assembly protein | - |
| LLE53_RS12525 (LLE53_012525) | 2545871..2546407 | + | 537 | WP_162700227.1 | pilus assembly protein | - |
| LLE53_RS12530 (LLE53_012530) | 2546503..2547738 | + | 1236 | WP_112523396.1 | phosphopentomutase | - |
| LLE53_RS12535 (LLE53_012535) | 2547731..2548624 | + | 894 | WP_227987300.1 | bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase | - |
| LLE53_RS12540 (LLE53_012540) | 2548638..2549411 | + | 774 | WP_113095018.1 | enoyl-CoA hydratase | - |
| LLE53_RS12545 (LLE53_012545) | 2549568..2549834 | + | 267 | WP_112523402.1 | 30S ribosomal protein S20 | - |
| LLE53_RS12550 (LLE53_012550) | 2550752..2552248 | + | 1497 | WP_112523986.1 | chromosomal replication initiator protein DnaA | - |
| LLE53_RS12555 (LLE53_012555) | 2552433..2553551 | + | 1119 | WP_091878630.1 | DNA polymerase III subunit beta | - |
| LLE53_RS12560 (LLE53_012560) | 2553941..2555107 | + | 1167 | WP_227987301.1 | DNA replication/repair protein RecF | - |
| LLE53_RS12565 (LLE53_012565) | 2555233..2555937 | + | 705 | WP_227987302.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| LLE53_RS12570 (LLE53_012570) | 2556130..2557791 | + | 1662 | WP_112523989.1 | L-lactate permease | - |
| LLE53_RS12575 (LLE53_012575) | 2557938..2558234 | + | 297 | WP_112523411.1 | hypothetical protein | - |
| LLE53_RS12580 (LLE53_012580) | 2558414..2558728 | + | 315 | WP_112523992.1 | quaternary ammonium compound efflux SMR transporter SugE | - |
| LLE53_RS12585 (LLE53_012585) | 2558777..2559559 | + | 783 | WP_227987303.1 | molybdopterin-synthase adenylyltransferase MoeB | - |
| LLE53_RS12590 (LLE53_012590) | 2559569..2560822 | + | 1254 | WP_227987304.1 | aconitase X catalytic domain-containing protein | - |
| LLE53_RS12595 (LLE53_012595) | 2560819..2561232 | + | 414 | WP_182508998.1 | DUF126 domain-containing protein | - |
| LLE53_RS12600 (LLE53_012600) | 2561528..2562529 | - | 1002 | WP_091880099.1 | D-glycerate dehydrogenase | - |
| LLE53_RS12605 (LLE53_012605) | 2562769..2563275 | + | 507 | WP_227988208.1 | SH3 domain-containing protein | - |
| LLE53_RS12610 (LLE53_012610) | 2563278..2564159 | - | 882 | WP_227987305.1 | DMT family transporter | - |
| LLE53_RS12615 (LLE53_012615) | 2564289..2565158 | + | 870 | WP_227987306.1 | HTH-type transcriptional regulator GltR | VF |
| LLE53_RS12620 (LLE53_012620) | 2565171..2565602 | - | 432 | WP_091878642.1 | Fur family transcriptional regulator | - |
| LLE53_RS12625 (LLE53_012625) | 2565826..2566341 | + | 516 | WP_091878644.1 | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA | - |
| LLE53_RS12630 (LLE53_012630) | 2566374..2567603 | + | 1230 | WP_227987307.1 | beta-ketoacyl-ACP synthase I | - |
| LLE53_RS12635 (LLE53_012635) | 2567615..2568430 | + | 816 | WP_112523439.1 | enoyl-ACP reductase FabI | - |
| LLE53_RS12640 (LLE53_012640) | 2568539..2568892 | + | 354 | WP_227987308.1 | hypothetical protein | - |
| LLE53_RS12645 (LLE53_012645) | 2568908..2569927 | - | 1020 | WP_227987309.1 | class I SAM-dependent methyltransferase | - |
| LLE53_RS12650 (LLE53_012650) | 2570042..2572186 | - | 2145 | WP_227987310.1 | polyribonucleotide nucleotidyltransferase | - |
| LLE53_RS12655 (LLE53_012655) | 2572406..2572675 | - | 270 | WP_162700226.1 | 30S ribosomal protein S15 | - |
| LLE53_RS12660 (LLE53_012660) | 2572659..2572985 | - | 327 | WP_182509003.1 | hypothetical protein | - |
| LLE53_RS12665 (LLE53_012665) | 2572984..2573751 | + | 768 | WP_227987311.1 | putative methyltransferase | VF |
| LLE53_RS12670 (LLE53_012670) | 2573794..2574141 | + | 348 | WP_227987312.1 | gamma-glutamylcyclotransferase family protein | - |
| LLE53_RS12675 (LLE53_012675) | 2574505..2575479 | - | 975 | WP_113095030.1 | tRNA pseudouridine(55) synthase TruB | - |
| LLE53_RS12680 (LLE53_012680) | 2575479..2575946 | - | 468 | WP_112523461.1 | 30S ribosome-binding factor RbfA | - |
| LLE53_RS12685 (LLE53_012685) | 2576040..2578832 | - | 2793 | WP_227987313.1 | Translation initiation factor IF-2 | VF |
| LLE53_RS12690 (LLE53_012690) | 2578829..2579488 | - | 660 | WP_255784145.1 | RNA-binding protein | - |
| LLE53_RS12695 (LLE53_012695) | 2579502..2581103 | - | 1602 | WP_112524010.1 | transcription termination factor NusA | - |
| LLE53_RS12700 (LLE53_012700) | 2581166..2581831 | - | 666 | WP_113095032.1 | Ribosome maturation factor RimP | VF |
| LLE53_RS12705 (LLE53_012705) | 2582234..2582398 | + | 165 | WP_175540538.1 | hypothetical protein | - |
| LLE53_RS12710 (LLE53_012710) | 2582459..2583976 | - | 1518 | WP_227987315.1 | tripartite tricarboxylate transporter permease | - |
| LLE53_RS12715 (LLE53_012715) | 2583991..2584473 | - | 483 | WP_112523477.1 | tripartite tricarboxylate transporter TctB family protein | - |
| LLE53_RS12720 (LLE53_012720) | 2584470..2585420 | - | 951 | WP_227987316.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| LLE53_RS12725 (LLE53_012725) | 2585656..2586363 | - | 708 | WP_227988209.1 | tRNA (guanine(46)-N(7))-methyltransferase TrmB | - |
| LLE53_RS12730 (LLE53_012730) | 2586389..2587654 | - | 1266 | WP_112523483.1 | methionine adenosyltransferase | - |
| LLE53_RS12735 (LLE53_012735) | 2587824..2588240 | - | 417 | WP_112523486.1 | helix-turn-helix domain-containing protein | - |
| LLE53_RS12740 (LLE53_012740) | 2588341..2589930 | - | 1590 | WP_227987317.1 | apolipoprotein N-acyltransferase | - |
| LLE53_RS12745 (LLE53_012745) | 2589988..2591076 | - | 1089 | WP_112523492.1 | Hemolysin C | VF |
| LLE53_RS12750 (LLE53_012750) | 2591082..2591615 | - | 534 | WP_227987318.1 | rRNA maturation RNase YbeY | - |
| LLE53_RS12755 (LLE53_012755) | 2591742..2592761 | - | 1020 | WP_227987319.1 | PhoH family protein | - |
| LLE53_RS12760 (LLE53_012760) | 2592793..2594232 | - | 1440 | WP_112523499.1 | tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB | - |
| LLE53_RS12765 (LLE53_012765) | 2594242..2595108 | - | 867 | WP_227988210.1 | lysophospholipid acyltransferase family protein | - |
| LLE53_RS12770 (LLE53_012770) | 2595113..2595616 | - | 504 | WP_227987320.1 | ribosomal protein S18-alanine N-acetyltransferase | - |
| LLE53_RS12775 (LLE53_012775) | 2595613..2596302 | - | 690 | WP_227987321.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB | - |
| LLE53_RS12780 (LLE53_012780) | 2596384..2596752 | - | 369 | WP_227987322.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LLE53_RS12785 (LLE53_012785) | 2596749..2596955 | - | 207 | WP_112523516.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LLE53_RS12790 (LLE53_012790) | 2597033..2597875 | - | 843 | WP_227987323.1 | DUF2066 domain-containing protein | - |
| LLE53_RS12795 (LLE53_012795) | 2597912..2599954 | - | 2043 | WP_227987324.1 | HWE histidine kinase domain-containing protein | - |
| LLE53_RS12800 (LLE53_012800) | 2600082..2600507 | - | 426 | WP_227987325.1 | GNAT family N-acetyltransferase | - |
| LLE53_RS12805 (LLE53_012805) | 2600534..2601049 | - | 516 | WP_227987326.1 | DUF3859 domain-containing protein | - |
| LLE53_RS12810 (LLE53_012810) | 2601056..2603236 | - | 2181 | WP_227987327.1 | malate synthase G | - |
| LLE53_RS12815 (LLE53_012815) | 2603344..2605359 | - | 2016 | WP_113095044.1 | hydantoinase/oxoprolinase family protein | - |
| LLE53_RS12820 (LLE53_012820) | 2605505..2606464 | + | 960 | WP_227987328.1 | cation diffusion facilitator family transporter | - |
| LLE53_RS12825 (LLE53_012825) | 2606519..2607112 | + | 594 | WP_227987329.1 | YdeI/OmpD-associated family protein | - |
| LLE53_RS12830 (LLE53_012830) | 2607196..2608431 | - | 1236 | WP_112524021.1 | DNA recombination protein RmuC | - |
| LLE53_RS12835 (LLE53_012835) | 2608567..2609097 | + | 531 | WP_112524024.1 | peptide deformylase | - |
| LLE53_RS12840 (LLE53_012840) | 2609101..2610036 | + | 936 | WP_227987330.1 | methionyl-tRNA formyltransferase | - |
| LLE53_RS12845 (LLE53_012845) | 2610033..2610530 | + | 498 | WP_227987331.1 | N-acetyltransferase | - |
| LLE53_RS12850 (LLE53_012850) | 2610530..2611315 | + | 786 | WP_227987332.1 | tRNA pseudouridine(38-40) synthase TruA | - |
| LLE53_RS12855 (LLE53_012855) | 2611267..2611878 | - | 612 | WP_227987333.1 | hypothetical protein | - |
| LLE53_RS12860 (LLE53_012860) | 2611885..2613072 | - | 1188 | WP_227987334.1 | succinyl-diaminopimelate desuccinylase | - |
| LLE53_RS12865 (LLE53_012865) | 2613171..2614202 | + | 1032 | WP_227987335.1 | 2-dehydropantoate 2-reductase | - |
| LLE53_RS12870 (LLE53_012870) | 2614208..2615503 | - | 1296 | WP_182509021.1 | MFS transporter | - |
| LLE53_RS12875 (LLE53_012875) | 2615588..2616442 | - | 855 | WP_112523566.1 | 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase | - |
| LLE53_RS12880 (LLE53_012880) | 2616597..2617439 | + | 843 | WP_112523569.1 | LOG family protein | - |
| LLE53_RS12885 (LLE53_012885) | 2617424..2617618 | - | 195 | WP_227987336.1 | hypothetical protein | - |
| LLE53_RS12890 (LLE53_012890) | 2617649..2618374 | - | 726 | WP_112523572.1 | hypothetical protein | VF |
| LLE53_RS12895 (LLE53_012895) | 2618617..2619294 | + | 678 | WP_162700223.1 | GGDEF domain-containing protein | - |
| LLE53_RS12900 (LLE53_012900) | 2619291..2620124 | - | 834 | WP_227987337.1 | phenylalanine 4-monooxygenase | - |
| LLE53_RS12905 (LLE53_012905) | 2620247..2620729 | + | 483 | WP_227987338.1 | Lrp/AsnC family transcriptional regulator | - |
| LLE53_RS12910 (LLE53_012910) | 2620730..2621623 | - | 894 | WP_091878718.1 | acetylglutamate kinase | - |
| LLE53_RS12915 (LLE53_012915) | 2621794..2622333 | + | 540 | WP_112523578.1 | sigma-70 family RNA polymerase sigma factor | - |
| LLE53_RS12920 (LLE53_012920) | 2622330..2623049 | + | 720 | WP_227987339.1 | anti-sigma factor | - |
| LLE53_RS12925 (LLE53_012925) | 2623063..2623686 | - | 624 | WP_210275799.1 | ribosome biogenesis GTP-binding protein YihA/YsxC | - |
| LLE53_RS12930 (LLE53_012930) | 2623879..2625720 | - | 1842 | WP_182509025.1 | membrane protein insertase YidC | - |
| LLE53_RS12935 (LLE53_012935) | 2625720..2626103 | - | 384 | WP_091880119.1 | ribonuclease P protein component | - |
| LLE53_RS12940 (LLE53_012940) | 2626152..2626286 | - | 135 | WP_040853797.1 | 50S ribosomal protein L34 | - |
| LLE53_RS12945 (LLE53_012945) | 2626571..2628028 | + | 1458 | WP_227988211.1 | HAMP domain-containing sensor histidine kinase | - |
| LLE53_RS12950 (LLE53_012950) | 2628043..2629503 | + | 1461 | WP_227987340.1 | phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family protein | - |
| LLE53_RS12955 (LLE53_012955) | 2629475..2630320 | - | 846 | WP_112523591.1 | endonuclease/exonuclease/phosphatase family protein | - |
| LLE53_RS12960 (LLE53_012960) | 2630407..2631690 | - | 1284 | WP_227987341.1 | FAD-binding oxidoreductase | - |
| LLE53_RS12965 (LLE53_012965) | 2631827..2632732 | - | 906 | WP_227987342.1 | LysR family transcriptional regulator | - |
| LLE53_RS12970 (LLE53_012970) | 2632857..2634260 | + | 1404 | WP_227987343.1 | VOC family protein | - |
| LLE53_RS12975 (LLE53_012975) | 2634349..2635860 | + | 1512 | WP_113095058.1 | aldehyde dehydrogenase family protein | - |
| LLE53_RS12980 (LLE53_012980) | 2636150..2638537 | + | 2388 | WP_227987344.1 | putative signaling protein | VF |
| LLE53_RS12985 (LLE53_012985) | 2638839..2639084 | + | 246 | WP_139210409.1 | hypothetical protein | - |
| LLE53_RS12990 (LLE53_012990) | 2639125..2639310 | + | 186 | WP_091878739.1 | hypothetical protein | - |
| LLE53_RS12995 (LLE53_012995) | 2639781..2640800 | - | 1020 | WP_112523609.1 | IS30 family transposase ISRssp4 | Transposase |
| LLE53_RS13000 (LLE53_013000) | 2641327..2643180 | - | 1854 | WP_227987346.1 | ABC transporter ATP-binding protein | - |
| LLE53_RS13005 (LLE53_013005) | 2643554..2644837 | - | 1284 | WP_227987347.1 | PAN domain-containing protein | - |
| LLE53_RS13010 (LLE53_013010) | 2645619..2646038 | - | 420 | WP_227987348.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|