MGE detailed information
MGE type: Conjugative plasmid MGE length: 92906 bp
Accession: NZ_CP088143 Location: 1..92906 Organism: Salmonella enterica subsp. enterica serovar Gallinarum strain SCPM-O-B-4548 Replicon: plasmid pB-4548_1
Accession: NZ_CP088143 Location: 1..92906 Organism: Salmonella enterica subsp. enterica serovar Gallinarum strain SCPM-O-B-4548 Replicon: plasmid pB-4548_1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM93_RS22605 (LRM93_22605) | 1347..1466 | - | 120 | Protein_1 | recombinase | - |
| LRM93_RS22610 (LRM93_22610) | 1519..1905 | - | 387 | WP_000751875.1 | YgiW/YdeI family stress tolerance OB fold protein | - |
| LRM93_RS22615 (LRM93_22615) | 2614..2916 | + | 303 | WP_000979451.1 | Major pilu subunit operon regulatory protein PapB | VF |
| LRM93_RS22620 (LRM93_22620) | 3191..3709 | + | 519 | WP_000748206.1 | hypothetical protein | VF |
| LRM93_RS22625 (LRM93_22625) | 3935..6343 | + | 2409 | WP_000007894.1 | Outer membrane usher protein FimD | VF |
| LRM93_RS22630 (LRM93_22630) | 6336..7028 | + | 693 | WP_001038511.1 | Chaperone protein FaeE | VF |
| LRM93_RS22635 (LRM93_22635) | 7025..7603 | + | 579 | WP_000085741.1 | hypothetical protein | - |
| LRM93_RS22640 (LRM93_22640) | 8215..9123 | + | 909 | WP_024799007.1 | hypothetical protein | - |
| LRM93_RS22645 (LRM93_22645) | 9423..10079 | + | 657 | WP_099800805.1 | DsbA family protein | - |
| LRM93_RS22650 (LRM93_22650) | 10069..10215 | + | 147 | WP_249896529.1 | hypothetical protein | - |
| LRM93_RS22655 (LRM93_22655) | 10266..11111 | + | 846 | WP_099800806.1 | YjiK family protein | - |
| LRM93_RS22660 (LRM93_22660) | 11201..11758 | + | 558 | WP_000725063.1 | Attachment invasion locus protein | VF |
| LRM93_RS22665 (LRM93_22665) | 12024..12764 | + | 741 | WP_038389655.1 | AraC family transcriptional regulator | - |
| LRM93_RS22670 (LRM93_22670) | 12867..13067 | - | 201 | Protein_14 | SdiA-regulated domain-containing protein | - |
| LRM93_RS22675 (LRM93_22675) | 13950..14831 | - | 882 | WP_001697166.1 | incFII family plasmid replication initiator RepA | - |
| LRM93_RS22680 (LRM93_22680) | 14812..14889 | - | 78 | WP_001541552.1 | RepA leader peptide Tap | - |
| LRM93_RS22685 (LRM93_22685) | 15137..15403 | - | 267 | WP_010999936.1 | replication regulatory protein RepA | - |
| LRM93_RS22690 (LRM93_22690) | 15514..16066 | - | 553 | Protein_18 | Phospholipase D | VF |
| LRM93_RS22695 (LRM93_22695) | 16359..16640 | - | 282 | Protein_19 | disulfide bond formation protein DsbA | - |
| LRM93_RS22700 (LRM93_22700) | 16757..17320 | - | 564 | WP_000139307.1 | fertility inhibition protein FinO | - |
| LRM93_RS22705 (LRM93_22705) | 17375..18115 | - | 741 | WP_000177631.1 | conjugal transfer pilus acetylase TraX | - |
| LRM93_RS22710 (LRM93_22710) | 18135..23390 | - | 5256 | WP_000986920.1 | Multifunctional conjugation protein TraI | Relaxase |
| LRM93_RS22715 (LRM93_22715) | 23472..23699 | + | 228 | WP_000450263.1 | toxin-antitoxin system antitoxin VapB | Antitoxin Detail |
| LRM93_RS22720 (LRM93_22720) | 23699..24097 | + | 399 | WP_000911323.1 | tRNA(fMet)-specific endonuclease VapC | Toxin Detail |
| LRM93_RS22725 (LRM93_22725) | 24106..26340 | - | 2235 | WP_000009313.1 | type IV conjugative transfer system coupling protein TraD | - |
| LRM93_RS22730 (LRM93_22730) | 26620..27231 | - | 612 | WP_232520941.1 | hypothetical protein | - |
| LRM93_RS22735 (LRM93_22735) | 27351..28082 | - | 732 | WP_000782437.1 | conjugal transfer complement resistance protein TraT | - |
| LRM93_RS22740 (LRM93_22740) | 28181..28492 | + | 312 | WP_000522257.1 | hypothetical protein | - |
| LRM93_RS22745 (LRM93_22745) | 28495..31314 | - | 2820 | Protein_29 | conjugal transfer mating-pair stabilization protein TraG | - |
| LRM93_RS22750 (LRM93_22750) | 31311..32693 | - | 1383 | WP_001161718.1 | conjugal transfer pilus assembly protein TraH | - |
| LRM93_RS22755 (LRM93_22755) | 32683..33231 | - | 549 | WP_000059056.1 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | - |
| LRM93_RS22760 (LRM93_22760) | 33218..33511 | - | 294 | WP_001233880.1 | type-F conjugative transfer system pilin chaperone TraQ | - |
| LRM93_RS22765 (LRM93_22765) | 33887..34231 | - | 345 | WP_001697170.1 | conjugal transfer protein TrbA | - |
| LRM93_RS22770 (LRM93_22770) | 34246..34995 | - | 750 | WP_001226834.1 | type-F conjugative transfer system pilin assembly protein TraF | - |
| LRM93_RS22775 (LRM93_22775) | 35008..35223 | - | 216 | WP_000783297.1 | conjugal transfer protein TrbE | - |
| LRM93_RS22780 (LRM93_22780) | 35233..35709 | - | 477 | WP_000046068.1 | hypothetical protein | - |
| LRM93_RS22785 (LRM93_22785) | 35720..37597 | - | 1878 | WP_000730206.1 | type-F conjugative transfer system mating-pair stabilization protein TraN | - |
| LRM93_RS22790 (LRM93_22790) | 37799..37936 | + | 138 | WP_154071808.1 | hypothetical protein | - |
| LRM93_RS22795 (LRM93_22795) | 37957..38586 | - | 630 | WP_000089759.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| LRM93_RS22800 (LRM93_22800) | 38583..38867 | - | 285 | WP_232520943.1 | hypothetical protein | - |
| LRM93_RS22805 (LRM93_22805) | 38898..39890 | - | 993 | WP_000833321.1 | conjugal transfer pilus assembly protein TraU | - |
| LRM93_RS22810 (LRM93_22810) | 39887..40519 | - | 633 | WP_000871997.1 | type-F conjugative transfer system protein TraW | - |
| LRM93_RS22815 (LRM93_22815) | 40516..40902 | - | 387 | WP_000105164.1 | type-F conjugative transfer system protein TrbI | - |
| LRM93_RS22820 (LRM93_22820) | 40877..43525 | - | 2649 | WP_000793311.1 | type IV secretion system protein TraC | - |
| LRM93_RS22825 (LRM93_22825) | 43541..43924 | - | 384 | WP_000870324.1 | hypothetical protein | - |
| LRM93_RS22830 (LRM93_22830) | 43921..44388 | - | 468 | WP_000549560.1 | hypothetical protein | - |
| LRM93_RS22835 (LRM93_22835) | 44381..44602 | - | 222 | WP_001278681.1 | conjugal transfer protein TraR | - |
| LRM93_RS22840 (LRM93_22840) | 44737..45252 | - | 516 | WP_001079997.1 | type IV conjugative transfer system lipoprotein TraV | - |
| LRM93_RS22845 (LRM93_22845) | 45249..45473 | - | 225 | WP_077906918.1 | DUF2689 domain-containing protein | - |
| LRM93_RS22850 (LRM93_22850) | 45451..46047 | - | 597 | WP_000527895.1 | conjugal transfer pilus-stabilizing protein TraP | - |
| LRM93_RS22855 (LRM93_22855) | 46037..47458 | - | 1422 | WP_000146702.1 | F-type conjugal transfer pilus assembly protein TraB | - |
| LRM93_RS22860 (LRM93_22860) | 47458..48198 | - | 741 | WP_001230721.1 | type-F conjugative transfer system secretin TraK | - |
| LRM93_RS22865 (LRM93_22865) | 48185..48751 | - | 567 | WP_000399761.1 | type IV conjugative transfer system protein TraE | - |
| LRM93_RS22870 (LRM93_22870) | 48773..49084 | - | 312 | WP_000012129.1 | type IV conjugative transfer system protein TraL | - |
| LRM93_RS22875 (LRM93_22875) | 49099..49461 | - | 363 | WP_001274198.1 | type IV conjugative transfer system pilin TraA | - |
| LRM93_RS22880 (LRM93_22880) | 49503..49730 | - | 228 | WP_001676655.1 | conjugal transfer relaxosome protein TraY | - |
| LRM93_RS22885 (LRM93_22885) | 49824..50510 | - | 687 | WP_000336296.1 | PAS domain-containing protein | - |
| LRM93_RS22890 (LRM93_22890) | 50703..51083 | - | 381 | WP_001151546.1 | conjugal transfer relaxosome DNA-binding protein TraM | - |
| LRM93_RS22895 (LRM93_22895) | 51500..51970 | + | 471 | WP_015056628.1 | hypothetical protein | VF |
| LRM93_RS22900 (LRM93_22900) | 52281..53099 | - | 819 | Protein_60 | DUF932 domain-containing protein | - |
| LRM93_RS22905 (LRM93_22905) | 53202..53360 | - | 159 | WP_001704449.1 | hypothetical protein | - |
| LRM93_RS23245 | 53446..53574 | - | 129 | WP_000372430.1 | hypothetical protein | - |
| LRM93_RS22910 (LRM93_22910) | 53609..54265 | - | 657 | Protein_63 | plasmid SOS inhibition protein A | - |
| LRM93_RS22915 (LRM93_22915) | 54268..54369 | - | 102 | Protein_64 | conjugation system SOS inhibitor PsiB family protein | - |
| LRM93_RS22920 (LRM93_22920) | 54409..56130 | - | 1722 | Protein_65 | ParB/RepB/Spo0J family partition protein | - |
| LRM93_RS22925 (LRM93_22925) | 56431..56853 | + | 423 | WP_000925628.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LRM93_RS22930 (LRM93_22930) | 56853..58127 | + | 1275 | WP_000457542.1 | Y-family DNA polymerase | - |
| LRM93_RS22935 (LRM93_22935) | 58209..59183 | - | 975 | WP_000064277.1 | ParB family protein | - |
| LRM93_RS22940 (LRM93_22940) | 59183..60388 | - | 1206 | WP_000427676.1 | AAA family ATPase | - |
| LRM93_RS22945 (LRM93_22945) | 60803..61744 | + | 942 | WP_000728919.1 | Recombination-promoting nuclease RpnA | VF |
| LRM93_RS22950 (LRM93_22950) | 61741..62346 | - | 606 | WP_000176303.1 | DUF2913 family protein | - |
| LRM93_RS22955 (LRM93_22955) | 62403..62819 | - | 417 | WP_000988946.1 | hypothetical protein | - |
| LRM93_RS22960 (LRM93_22960) | 62922..63338 | - | 417 | WP_001541564.1 | hypothetical protein | - |
| LRM93_RS22965 (LRM93_22965) | 63424..64528 | - | 1105 | Protein_74 | DNA-binding protein | - |
| LRM93_RS22970 (LRM93_22970) | 64786..65274 | + | 489 | WP_001135409.1 | hypothetical protein | - |
| LRM93_RS22975 (LRM93_22975) | 65929..66669 | + | 741 | WP_001541566.1 | carbonic anhydrase family protein | - |
| LRM93_RS22980 (LRM93_22980) | 66876..67436 | + | 561 | WP_001240330.1 | Tn3 family transposase TnBth3 | Transposase |
| LRM93_RS22985 (LRM93_22985) | 67420..69084 | + | 1665 | WP_000098783.1 | IS481 family transposase ISAzs36 | Transposase |
| LRM93_RS22990 (LRM93_22990) | 69017..70042 | + | 1026 | WP_077906920.1 | ExeA family protein | - |
| LRM93_RS22995 (LRM93_22995) | 70231..70966 | - | 736 | Protein_80 | IS630 family transposase ISPeat1 | Transposase |
| LRM93_RS23000 (LRM93_23000) | 71574..72467 | + | 894 | WP_000346689.1 | virulence genes transcriptional activator SpvR | - |
| LRM93_RS23005 (LRM93_23005) | 72641..72805 | + | 165 | WP_001576629.1 | glycoside hydrolase family protein | - |
| LRM93_RS23010 (LRM93_23010) | 72979..73746 | + | 768 | WP_001676649.1 | virulence protein SpvA | - |
| LRM93_RS23015 (LRM93_23015) | 73709..73876 | + | 168 | WP_001526987.1 | hypothetical protein | - |
| LRM93_RS23020 (LRM93_23020) | 73928..75703 | + | 1776 | WP_001676648.1 | Mono(ADP-ribosyl)transferase SpvB | VF |
| LRM93_RS23025 (LRM93_23025) | 75984..76709 | + | 726 | WP_001122240.1 | MAPK phosphothreonine lyase | VF |
| LRM93_RS23030 (LRM93_23030) | 76971..77621 | + | 651 | WP_001575489.1 | SPI-2 type III secretion system effector cysteine hydrolase SpvD | - |
| LRM93_RS23035 (LRM93_23035) | 77748..78173 | - | 426 | WP_000064919.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LRM93_RS23040 (LRM93_23040) | 78230..78580 | + | 351 | WP_001541541.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LRM93_RS23045 (LRM93_23045) | 78647..79192 | - | 546 | WP_071591236.1 | Invasin | VF |
| LRM93_RS23050 (LRM93_23050) | 79087..79410 | - | 324 | WP_223163851.1 | LysM peptidoglycan-binding domain-containing protein | - |
| LRM93_RS23055 (LRM93_23055) | 79927..80412 | - | 486 | WP_000905606.1 | membrane protein | - |
| LRM93_RS23060 (LRM93_23060) | 80406..80894 | - | 489 | WP_001075507.1 | CaiF/GrlA family transcriptional regulator | - |
| LRM93_RS23065 (LRM93_23065) | 80919..81632 | - | 714 | WP_000545756.1 | Cyclic di-GMP phosphodiesterase PdeL | VF |
| LRM93_RS23070 (LRM93_23070) | 81641..82423 | - | 783 | WP_000082169.1 | site-specific integrase | - |
| LRM93_RS23075 (LRM93_23075) | 82458..82979 | - | 522 | WP_000198608.1 | hypothetical protein | - |
| LRM93_RS23080 (LRM93_23080) | 82976..83266 | - | 291 | WP_001266176.1 | hypothetical protein | - |
| LRM93_RS23085 (LRM93_23085) | 83268..83573 | - | 306 | WP_001159863.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| LRM93_RS23090 (LRM93_23090) | 83575..83793 | - | 219 | WP_000813641.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| LRM93_RS23095 (LRM93_23095) | 84539..84769 | + | 231 | WP_001261289.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| LRM93_RS23100 (LRM93_23100) | 84766..85182 | + | 417 | WP_001697179.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LRM93_RS23105 (LRM93_23105) | 85214..85957 | + | 744 | WP_001292424.1 | hypothetical protein | - |
| LRM93_RS23110 (LRM93_23110) | 86195..87283 | + | 1089 | WP_021003379.1 | transcriptional repressor PifC | - |
| LRM93_RS23115 (LRM93_23115) | 87285..89528 | + | 2244 | WP_001000609.1 | P-loop NTPase fold protein | - |
| LRM93_RS23120 (LRM93_23120) | 89652..90551 | - | 900 | WP_000963205.1 | nucleotide-binding protein | - |
| LRM93_RS23125 (LRM93_23125) | 90541..90831 | - | 291 | WP_000538309.1 | hypothetical protein | - |
| LRM93_RS23130 (LRM93_23130) | 91100..91621 | + | 522 | WP_077906922.1 | hypothetical protein | - |
| LRM93_RS23135 (LRM93_23135) | 91665..92093 | - | 429 | Protein_108 | hypothetical protein | - |
| LRM93_RS23140 (LRM93_23140) | 92105..92365 | + | 261 | Protein_109 | cytoplasmic protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|