MGE detailed information
MGE type: Prophage MGE length: 38834 bp
Accession: NZ_CP088134 Location: 1813..40646 Organism: Salmonella enterica subsp. enterica serovar Gallinarum strain SCPM-O-B-4493 Replicon: chromosome
Accession: NZ_CP088134 Location: 1813..40646 Organism: Salmonella enterica subsp. enterica serovar Gallinarum strain SCPM-O-B-4493 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM90_RS00010 (1532) | 1532..1768 | - | 237 | WP_001617893.1 | hypothetical protein | - |
| LRM90_RS00015 (1813) | 1813..5175 | - | 3363 | WP_023234884.1 | host specificity protein J | - |
| LRM90_RS00020 (5238) | 5238..5885 | - | 648 | WP_023236538.1 | tail assembly protein | - |
| LRM90_RS00025 (5783) | 5783..6520 | - | 738 | WP_000662740.1 | C40 family peptidase | - |
| LRM90_RS00030 (6527) | 6527..7225 | - | 699 | WP_001539790.1 | phage minor tail protein L | - |
| LRM90_RS00035 (7235) | 7235..7564 | - | 330 | WP_000447370.1 | phage tail protein | - |
| LRM90_RS00040 (7567) | 7567..10608 | - | 3042 | WP_001539789.1 | phage tail tape measure protein | - |
| LRM90_RS00045 (10580) | 10580..10918 | - | 339 | WP_077905885.1 | phage tail assembly protein T | - |
| LRM90_RS00050 (10915) | 10915..11310 | - | 396 | WP_000479607.1 | phage minor tail protein G | - |
| LRM90_RS00055 (11361) | 11361..12107 | - | 747 | WP_000971954.1 | phage tail tube protein | - |
| LRM90_RS00060 (12115) | 12115..12516 | - | 402 | WP_000033885.1 | phage minor tail U family protein | - |
| LRM90_RS00065 (12513) | 12513..13091 | - | 579 | WP_000677089.1 | phage tail protein | - |
| LRM90_RS00070 (13197) | 13197..14327 | + | 1131 | WP_001539782.1 | IS200-IS605 family transposase ISEc42 | Transposase |
| LRM90_RS00075 (14360) | 14360..14743 | - | 384 | WP_001539781.1 | head-tail joining protein | - |
| LRM90_RS00080 (14754) | 14754..15113 | - | 360 | WP_001539780.1 | DNA-packaging protein FI | - |
| LRM90_RS00085 (15171) | 15171..16199 | - | 1029 | WP_000522566.1 | major capsid protein | - |
| LRM90_RS00090 (16254) | 16254..16601 | - | 348 | WP_001539777.1 | head decoration protein | - |
| LRM90_RS00095 (16614) | 16614..18110 | - | 1497 | WP_006669512.1 | S49 family peptidase | - |
| LRM90_RS00100 (18100) | 18100..19680 | - | 1581 | WP_000831820.1 | phage portal protein | - |
| LRM90_RS00105 (19677) | 19677..19880 | - | 204 | WP_000201415.1 | gpW family protein | - |
| LRM90_RS00110 (19864) | 19864..21795 | - | 1932 | WP_001539769.1 | phage terminase large subunit family protein | - |
| LRM90_RS00115 (21767) | 21767..22312 | - | 546 | WP_001102154.1 | terminase small subunit | - |
| LRM90_RS00120 (22571) | 22571..23074 | - | 504 | WP_023234883.1 | hypothetical protein | - |
| LRM90_RS00125 (23177) | 23177..23719 | - | 543 | WP_001539764.1 | DUF2514 family protein | - |
| LRM90_RS00130 (23716) | 23716..24330 | - | 615 | WP_001539762.1 | glycoside hydrolase family 19 protein | - |
| LRM90_RS00135 (24330) | 24330..24611 | - | 282 | WP_000226307.1 | phage holin family protein | - |
| LRM90_RS00140 (24598) | 24598..24987 | - | 390 | WP_001294873.1 | phage holin family protein | - |
| LRM90_RS00145 (25097) | 25097..25441 | - | 345 | Protein_28 | site-specific DNA-methyltransferase | - |
| LRM90_RS00150 (25488) | 25488..25907 | - | 420 | WP_001539755.1 | hypothetical protein | - |
| LRM90_RS00155 (26133) | 26133..26711 | - | 579 | WP_001539753.1 | DUF1133 family protein | - |
| LRM90_RS00160 (26726) | 26726..27715 | - | 990 | WP_001539752.1 | DUF968 domain-containing protein | - |
| LRM90_RS00165 (27723) | 27723..28583 | - | 861 | WP_001539751.1 | KilA-N domain-containing protein | - |
| LRM90_RS00170 (28600) | 28600..28989 | - | 390 | WP_001539749.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LRM90_RS00175 (28986) | 28986..29639 | - | 654 | WP_001539748.1 | phage N-6-adenine-methyltransferase | - |
| LRM90_RS00180 (29639) | 29639..30121 | - | 483 | WP_023234881.1 | PerC family transcriptional regulator | - |
| LRM90_RS00185 (30123) | 30123..30941 | - | 819 | WP_001539747.1 | helix-turn-helix domain-containing protein | - |
| LRM90_RS00190 (30938) | 30938..31162 | - | 225 | WP_000620702.1 | hypothetical protein | - |
| LRM90_RS00195 (31159) | 31159..31896 | - | 738 | Protein_38 | Rha family transcriptional regulator | - |
| LRM90_RS00200 (32020) | 32020..32649 | - | 630 | Protein_39 | Rha family transcriptional regulator | - |
| LRM90_RS00205 (32773) | 32773..33003 | + | 231 | WP_108429764.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LRM90_RS00210 (32993) | 32993..33301 | + | 309 | WP_000147078.1 | helix-turn-helix transcriptional regulator | Antitoxin Detail |
| LRM90_RS00215 (33320) | 33320..33496 | - | 177 | WP_001525520.1 | DUF4222 domain-containing protein | - |
| LRM90_RS00220 (33636) | 33636..34190 | - | 555 | WP_000509731.1 | YmfL family putative regulatory protein | - |
| LRM90_RS00225 (34219) | 34219..34443 | - | 225 | WP_001191666.1 | helix-turn-helix transcriptional regulator | - |
| LRM90_RS00230 (34541) | 34541..35236 | + | 696 | WP_001020640.1 | helix-turn-helix transcriptional regulator | - |
| LRM90_RS00235 (35571) | 35571..35768 | - | 198 | WP_001624554.1 | hypothetical protein | - |
| LRM90_RS00240 (36326) | 36326..36682 | + | 357 | WP_001539742.1 | hypothetical protein | - |
| LRM90_RS00245 (36740) | 36740..37567 | + | 828 | WP_023234876.1 | DUF2303 family protein | - |
| LRM90_RS00250 (37704) | 37704..37862 | + | 159 | WP_000008355.1 | hypothetical protein | - |
| LRM90_RS00255 (37931) | 37931..38176 | + | 246 | WP_000939947.1 | excisionase | - |
| LRM90_RS00260 (38157) | 38157..39284 | + | 1128 | WP_001539740.1 | Multidrug resistance protein MdtC ; Integrase | Integrase |
| LRM90_RS00265 (39396) | 39396..40646 | - | 1251 | WP_023234874.1 | NADP-dependent isocitrate dehydrogenase | - |
| LRM90_RS00270 (40818) | 40818..41399 | + | 582 | WP_023234873.1 | 23S rRNA pseudouridine(2457) synthase RluE | - |
| LRM90_RS00275 (41396) | 41396..41725 | + | 330 | WP_000825957.1 | lysozyme inhibitor LprI family protein | - |
| LRM90_RS00280 (41737) | 41737..42198 | + | 462 | WP_000476069.1 | NUDIX hydrolase | - |
| LRM90_RS00285 (42252) | 42252..43358 | + | 1107 | WP_000004540.1 | tRNA 2-thiouridine(34) synthase MnmA | - |
| LRM90_RS00290 (43445) | 43445..44086 | + | 642 | WP_023236528.1 | high frequency lysogenization protein HflD | - |
| LRM90_RS00295 (44090) | 44090..45460 | + | 1371 | WP_000423763.1 | adenylosuccinate lyase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|