MGE detailed information
MGE type: Prophage MGE length: 42188 bp
Accession: NZ_CP088131 Location: 2352474..2394661 Organism: Escherichia coli strain 81 Replicon: chromosome
Accession: NZ_CP088131 Location: 2352474..2394661 Organism: Escherichia coli strain 81 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LRM32_RS11470 (2348373) | 2348373..2349593 | + | 1221 | WP_000225262.1 | DNA-binding transcriptional repressor Mlc | - |
| LRM32_RS11475 (2349718) | 2349718..2350413 | + | 696 | WP_000919231.1 | dethiobiotin synthase | - |
| LRM32_RS11480 (2350366) | 2350366..2351658 | - | 1293 | WP_001315626.1 | voltage-gated ClC-type chloride channel ClcB | - |
| LRM32_RS11485 (2351817) | 2351817..2352431 | - | 615 | WP_000148710.1 | Tat proofreading chaperone DmsD | - |
| LRM32_RS11490 (2352474) | 2352474..2353328 | - | 855 | WP_000526503.1 | dimethyl sulfoxide reductase anchor subunit family protein | - |
| LRM32_RS11495 (2353330) | 2353330..2353947 | - | 618 | WP_000213028.1 | dimethylsulfoxide reductase subunit B | - |
| LRM32_RS11500 (2353958) | 2353958..2356381 | - | 2424 | WP_072217321.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LRM32_RS11505 (2356442) | 2356442..2358868 | - | 2427 | WP_016242148.1 | DmsA/YnfE/YnfF family dimethyl sulfoxide reductase | - |
| LRM32_RS11510 (2359067) | 2359067..2359372 | - | 306 | WP_001300836.1 | DUF1161 domain-containing protein | - |
| LRM32_RS11515 (2359480) | 2359480..2360190 | + | 711 | WP_001321287.1 | YnfC family lipoprotein | - |
| LRM32_RS11520 (2360193) | 2360193..2360753 | - | 561 | WP_001138581.1 | spermidine N1-acetyltransferase | - |
| LRM32_RS11525 (2360788) | 2360788..2361129 | - | 342 | WP_000705211.1 | DUF1283 family protein | - |
| LRM32_RS11530 (2361264) | 2361264..2361590 | + | 327 | WP_000598292.1 | YnfA family protein | - |
| LRM32_RS11535 (2361796) | 2361796..2363010 | + | 1215 | WP_001295394.1 | starvation-sensing protein RspA | - |
| LRM32_RS11540 (2363022) | 2363022..2363516 | + | 495 | Protein_2265 | alcohol dehydrogenase catalytic domain-containing protein | - |
| LRM32_RS11550 (2364287) | 2364287..2364817 | + | 531 | Protein_2267 | zinc-binding dehydrogenase | - |
| LRM32_RS11555 (2365005) | 2365005..2366285 | - | 1281 | WP_000876986.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LRM32_RS11560 (2366320) | 2366320..2366571 | - | 252 | WP_000005552.1 | excisionase family protein | - |
| LRM32_RS11565 (2366644) | 2366644..2369115 | - | 2472 | WP_060617814.1 | exonuclease | - |
| LRM32_RS11570 (2369208) | 2369208..2369399 | - | 192 | WP_001083297.1 | lysis protein YdfD | - |
| LRM32_RS11580 (2369587) | 2369587..2369970 | + | 384 | WP_001201739.1 | IS66 family transposase IS682 | Transposase |
| LRM32_RS11585 (2369967) | 2369967..2370314 | + | 348 | WP_000609174.1 | IS66 family transposase ISCfr14 | Transposase |
| LRM32_RS11590 (2370364) | 2370364..2371362 | + | 999 | Protein_2274 | IS66 family transposase ISSgsp1 | Transposase |
| LRM32_RS11595 (2371363) | 2371363..2371563 | + | 201 | Protein_2275 | IS66 family transposase ISSgsp1 | Transposase |
| LRM32_RS11600 (2371586) | 2371586..2372551 | + | 966 | WP_000054514.1 | hypothetical protein | - |
| LRM32_RS11605 (2372592) | 2372592..2373014 | + | 423 | WP_001151262.1 | DUF977 family protein | - |
| LRM32_RS11610 (2373011) | 2373011..2373500 | + | 490 | Protein_2278 | class I SAM-dependent methyltransferase | - |
| LRM32_RS11615 (2373978) | 2373978..2374399 | + | 422 | Protein_2279 | hypothetical protein | - |
| LRM32_RS11620 (2375034) | 2375034..2375405 | + | 372 | WP_001406656.1 | ISNCY family transposase ISRel10 | Transposase |
| LRM32_RS11625 (2375443) | 2375443..2376105 | + | 663 | Protein_2281 | ISNCY family transposase ISCARN112 | Transposase |
| LRM32_RS11630 (2376226) | 2376226..2376375 | + | 150 | WP_011443592.1 | ISNCY family transposase ISCARN112 | Transposase |
| LRM32_RS11635 (2376812) | 2376812..2377024 | - | 213 | Protein_2283 | FlxA-like family protein | - |
| LRM32_RS11640 (2377088) | 2377088..2378250 | + | 1163 | WP_085947771.1 | IS3 family transposase IS3 | Transposase |
| LRM32_RS11645 (2378280) | 2378280..2378405 | - | 126 | Protein_2285 | protein FlxA | - |
| LRM32_RS11650 (2378608) | 2378608..2378913 | - | 306 | WP_001326990.1 | protein YdfV | - |
| LRM32_RS11655 (2378938) | 2378938..2379177 | + | 240 | WP_000534858.1 | type II toxin-antitoxin system antitoxin RelB | Antitoxin Detail |
| LRM32_RS11660 (2379177) | 2379177..2379464 | + | 288 | WP_000323025.1 | type II toxin-antitoxin system mRNA interferase RelE | Toxin Detail |
| LRM32_RS11665 (2379536) | 2379536..2379691 | + | 156 | WP_000813254.1 | type I toxin-antitoxin system toxin HokD | - |
| LRM32_RS11670 (2379908) | 2379908..2380159 | + | 252 | WP_000980994.1 | protein Rem | - |
| LRM32_RS11675 (2380226) | 2380226..2380504 | + | 279 | WP_012304870.1 | hypothetical protein | - |
| LRM32_RS11680 (2380506) | 2380506..2381555 | + | 1050 | WP_001265198.1 | DUF968 domain-containing protein | - |
| LRM32_RS11685 (2381569) | 2381569..2382321 | + | 753 | WP_001047135.1 | antitermination protein | - |
| LRM32_RS11690 (2382470) | 2382470..2383167 | + | 698 | WP_103215986.1 | IS1 family transposase IS1R | Transposase |
| LRM32_RS11695 (2383376) | 2383376..2383465 | - | 90 | WP_120795389.1 | hypothetical protein | - |
| LRM32_RS11700 (2383520) | 2383520..2383732 | - | 213 | WP_000087756.1 | cold shock-like protein CspF | - |
| LRM32_RS11705 (2384033) | 2384033..2384248 | + | 216 | WP_000066484.1 | cold shock-like protein CspB | - |
| LRM32_RS11710 (2384612) | 2384612..2384782 | - | 171 | WP_213044735.1 | YnfU family zinc-binding protein | - |
| LRM32_RS11715 (2385002) | 2385002..2385217 | + | 216 | WP_000839590.1 | phage lysis protein EssD | - |
| LRM32_RS11720 (2385222) | 2385222..2385533 | + | 312 | WP_000189915.1 | YdfR family protein | - |
| LRM32_RS11725 (2385530) | 2385530..2386063 | + | 534 | WP_060617812.1 | lysozyme | - |
| LRM32_RS11730 (2386060) | 2386060..2386557 | + | 498 | WP_001071769.1 | DUF2514 domain-containing protein | - |
| LRM32_RS11735 (2386921) | 2386921..2387133 | + | 213 | WP_000066495.1 | cold shock protein CspI | - |
| LRM32_RS11740 (2387144) | 2387144..2387332 | + | 189 | WP_071524604.1 | cold-shock protein | - |
| LRM32_RS11745 (2387335) | 2387335..2387400 | + | 66 | WP_122134696.1 | small protein YnfR | - |
| LRM32_RS11750 (2387405) | 2387405..2387635 | + | 231 | WP_000720962.1 | protein YnfN | - |
| LRM32_RS11755 (2387807) | 2387807..2387980 | + | 174 | WP_001019606.1 | addiction module toxin, GnsA/GnsB family | - |
| LRM32_RS11760 (2388132) | 2388132..2388542 | - | 411 | WP_000373090.1 | DUF1398 domain-containing protein | - |
| LRM32_RS11765 (2388600) | 2388600..2388833 | - | 234 | WP_001368374.1 | YlcI/YnfO family protein | - |
| LRM32_RS11770 (2389222) | 2389222..2389728 | + | 507 | Protein_2310 | DNA-packaging protein | - |
| LRM32_RS11775 (2389984) | 2389984..2390631 | + | 648 | Protein_2311 | phage tail protein | - |
| LRM32_RS11780 (2390631) | 2390631..2391206 | + | 576 | WP_000885587.1 | tail fiber assembly protein | - |
| LRM32_RS11785 (2391304) | 2391304..2391894 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LRM32_RS11790 (2392211) | 2392211..2392444 | - | 234 | WP_000836768.1 | cold shock protein YdfK | - |
| LRM32_RS11795 (2392513) | 2392513..2392626 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LRM32_RS11800 (2393231) | 2393231..2393659 | + | 429 | Protein_2316 | MHS family MFS transporter YdfJ | - |
| LRM32_RS11805 (2393693) | 2393693..2394661 | + | 969 | WP_077778729.1 | IS5 family transposase IS903B | Transposase |
| LRM32_RS11810 (2394719) | 2394719..2395578 | + | 860 | Protein_2318 | MHS family MFS transporter YdfJ | - |
| LRM32_RS11815 (2395667) | 2395667..2397125 | + | 1459 | Protein_2319 | mannitol dehydrogenase family protein | - |
| LRM32_RS11820 (2397160) | 2397160..2397363 | - | 204 | WP_000214712.1 | putative selenium delivery protein YdfZ | - |
| LRM32_RS11825 (2397540) | 2397540..2398225 | - | 686 | Protein_2321 | DNA-binding transcriptional regulator rspR | - |
| LRM32_RS11830 (2398314) | 2398314..2399059 | - | 746 | Protein_2322 | bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|