MGE detailed information
MGE type: Conjugative plasmid MGE length: 109937 bp
Accession: NZ_CP088103 Location: 1..109937 Organism: Bradyrhizobium japonicum strain CC829 Replicon: plasmid pCC829_3
Accession: NZ_CP088103 Location: 1..109937 Organism: Bradyrhizobium japonicum strain CC829 Replicon: plasmid pCC829_3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BjapCC829_RS49725 (BjapCC829_49725) | 1..1188 | + | 1188 | WP_231146005.1 | Sporulation initiation inhibitor protein Soj | VF |
| BjapCC829_RS49730 (BjapCC829_49730) | 1261..2280 | + | 1020 | WP_231146006.1 | plasmid partitioning protein RepB | - |
| BjapCC829_RS49735 (BjapCC829_49735) | 2448..3755 | + | 1308 | WP_231146007.1 | plasmid replication protein RepC | - |
| BjapCC829_RS49740 (BjapCC829_49740) | 3986..4234 | + | 249 | WP_231146008.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| BjapCC829_RS49745 (BjapCC829_49745) | 4231..4644 | + | 414 | WP_231146009.1 | type II toxin-antitoxin system VapC family toxin | - |
| BjapCC829_RS49750 (BjapCC829_49750) | 4664..5734 | - | 1071 | WP_231146010.1 | tyrosine-type recombinase/integrase | - |
| BjapCC829_RS49755 (BjapCC829_49755) | 5737..6123 | - | 387 | WP_231146011.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| BjapCC829_RS49760 (BjapCC829_49760) | 6123..6377 | - | 255 | WP_231146012.1 | type II toxin-antitoxin system VapB family antitoxin | Antitoxin Detail |
| BjapCC829_RS49765 (BjapCC829_49765) | 6468..6518 | + | 51 | Protein_8 | hypothetical protein | - |
| BjapCC829_RS49770 (BjapCC829_49770) | 6531..6815 | + | 285 | WP_231146013.1 | hypothetical protein | - |
| BjapCC829_RS49775 (BjapCC829_49775) | 6875..8053 | + | 1179 | WP_231146014.1 | TniQ family protein | - |
| BjapCC829_RS49780 (BjapCC829_49780) | 8150..9091 | + | 942 | WP_231146015.1 | DUF1403 family protein | - |
| BjapCC829_RS49785 (BjapCC829_49785) | 9093..9785 | + | 693 | WP_231146016.1 | SMC-Scp complex subunit ScpB | - |
| BjapCC829_RS49790 (BjapCC829_49790) | 9964..10156 | - | 193 | Protein_13 | transposase | - |
| BjapCC829_RS49795 (BjapCC829_49795) | 10210..10567 | - | 358 | Protein_14 | IS4 family transposase | - |
| BjapCC829_RS49800 (BjapCC829_49800) | 10528..10722 | - | 195 | WP_231146017.1 | hypothetical protein | - |
| BjapCC829_RS49805 (BjapCC829_49805) | 10726..11446 | - | 721 | Protein_16 | 7-cyano-7-deazaguanine synthase QueC | - |
| BjapCC829_RS49810 (BjapCC829_49810) | 11473..11835 | - | 363 | WP_231146018.1 | 6-carboxytetrahydropterin synthase QueD | - |
| BjapCC829_RS49815 (BjapCC829_49815) | 11977..12468 | - | 492 | Protein_18 | IS21 family transposase ISBj11 | Transposase |
| BjapCC829_RS49820 (BjapCC829_49820) | 12603..13730 | - | 1128 | Protein_19 | IS3-like element ISRj2 family transposase | - |
| BjapCC829_RS49825 (BjapCC829_49825) | 13970..14356 | - | 387 | WP_231145987.1 | type II toxin-antitoxin system VapC family toxin | - |
| BjapCC829_RS49830 (BjapCC829_49830) | 14353..14514 | - | 162 | WP_231145988.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| BjapCC829_RS49835 (BjapCC829_49835) | 14514..14612 | - | 99 | Protein_22 | IS5/IS1182 family transposase | - |
| BjapCC829_RS49840 (BjapCC829_49840) | 14945..15391 | + | 447 | Protein_23 | substrate-binding domain-containing protein | - |
| BjapCC829_RS49845 (BjapCC829_49845) | 15366..16304 | - | 939 | WP_231146019.1 | LysR family transcriptional regulator | - |
| BjapCC829_RS49850 (BjapCC829_49850) | 16417..17096 | + | 680 | Protein_25 | nitronate monooxygenase | - |
| BjapCC829_RS49855 (BjapCC829_49855) | 17456..18112 | + | 657 | WP_231146020.1 | flavin reductase | - |
| BjapCC829_RS49860 (BjapCC829_49860) | 18172..18504 | + | 333 | Protein_27 | IS3 family transposase ISRj2 | Transposase |
| BjapCC829_RS49865 (BjapCC829_49865) | 18928..20262 | - | 1335 | WP_231146021.1 | oxygen-independent coproporphyrinogen III oxidase | - |
| BjapCC829_RS49870 (BjapCC829_49870) | 21109..21990 | - | 882 | Protein_29 | IS5 family transposase ISRpa8 | Transposase |
| BjapCC829_RS49875 (BjapCC829_49875) | 22411..23640 | - | 1230 | WP_231141967.1 | IS91 family transposase ISAzo26 | Transposase |
| BjapCC829_RS49880 (BjapCC829_49880) | 23659..24519 | - | 861 | WP_231143676.1 | Tyrosine recombinase XerD | VF |
| BjapCC829_RS49885 (BjapCC829_49885) | 25197..26480 | + | 1284 | WP_231145945.1 | group II intron reverse transcriptase/maturase | - |
| BjapCC829_RS49890 (BjapCC829_49890) | 26705..27163 | + | 459 | Protein_33 | IS5 family transposase ISBj5_B | Transposase |
| BjapCC829_RS49895 (BjapCC829_49895) | 27343..28023 | + | 681 | WP_231146022.1 | hypothetical protein | - |
| BjapCC829_RS49900 (BjapCC829_49900) | 28442..28876 | - | 435 | WP_231146023.1 | NlpC/P60 family protein | - |
| BjapCC829_RS49905 (BjapCC829_49905) | 29152..30375 | + | 1224 | WP_231146024.1 | site-specific integrase | - |
| BjapCC829_RS49910 (BjapCC829_49910) | 30372..31340 | + | 969 | WP_231146025.1 | Tyrosine recombinase XerC | VF |
| BjapCC829_RS49915 (BjapCC829_49915) | 31337..32294 | + | 958 | Protein_38 | Tyrosine recombinase XerD | VF |
| BjapCC829_RS49920 (BjapCC829_49920) | 32468..33751 | - | 1284 | WP_231145945.1 | group II intron reverse transcriptase/maturase | - |
| BjapCC829_RS49925 (BjapCC829_49925) | 34504..35388 | + | 885 | WP_231146026.1 | IS91 family transposase ISAzo26 | Transposase |
| BjapCC829_RS49930 (BjapCC829_49930) | 35400..36605 | + | 1206 | WP_231146027.1 | IS91 family transposase ISAzo26 | Transposase |
| BjapCC829_RS49935 (BjapCC829_49935) | 37273..37587 | - | 315 | WP_231146028.1 | GIY-YIG nuclease family protein | - |
| BjapCC829_RS49940 (BjapCC829_49940) | 38047..38922 | - | 876 | Protein_43 | IS3 family transposase ISBj3 | Transposase |
| BjapCC829_RS49945 (BjapCC829_49945) | 39150..40532 | + | 1383 | WP_231146040.1 | IS110 family transposase ISWpi13 | Transposase |
| BjapCC829_RS49950 (BjapCC829_49950) | 40537..40791 | - | 255 | Protein_45 | transposase | - |
| BjapCC829_RS49955 (BjapCC829_49955) | 41125..41754 | - | 630 | WP_231146029.1 | Response regulator protein TodT | VF |
| BjapCC829_RS49960 (BjapCC829_49960) | 42390..42788 | + | 399 | WP_231146030.1 | hypothetical protein | - |
| BjapCC829_RS49965 (BjapCC829_49965) | 43052..43468 | + | 417 | WP_231146031.1 | DUF6527 family protein | - |
| BjapCC829_RS49970 (BjapCC829_49970) | 44218..44841 | + | 624 | WP_231146032.1 | NUDIX hydrolase | - |
| BjapCC829_RS49975 (BjapCC829_49975) | 45206..45910 | + | 705 | WP_231146033.1 | autoinducer binding domain-containing protein | - |
| BjapCC829_RS49980 (BjapCC829_49980) | 46545..47162 | - | 618 | WP_231146034.1 | TraH family protein | - |
| BjapCC829_RS49985 (BjapCC829_49985) | 47174..48310 | - | 1137 | WP_231146041.1 | conjugal transfer protein TraB | - |
| BjapCC829_RS49990 (BjapCC829_49990) | 48330..48863 | - | 534 | WP_231146035.1 | conjugative transfer signal peptidase TraF | - |
| BjapCC829_RS49995 (BjapCC829_49995) | 48860..52168 | - | 3309 | WP_231146036.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| BjapCC829_RS50000 (BjapCC829_50000) | 52424..52684 | + | 261 | WP_231146037.1 | TraC family protein | - |
| BjapCC829_RS50005 (BjapCC829_50005) | 52689..52904 | + | 216 | WP_231146038.1 | type IV conjugative transfer system coupling protein TraD | - |
| BjapCC829_RS50010 (BjapCC829_50010) | 52891..54843 | + | 1953 | WP_231146039.1 | Conjugal transfer protein TraG | VF |
| BjapCC829_RS50015 (BjapCC829_50015) | 55094..55438 | + | 345 | WP_231145970.1 | hypothetical protein | - |
| BjapCC829_RS50020 (BjapCC829_50020) | 56017..56205 | - | 189 | WP_231145971.1 | hypothetical protein | - |
| BjapCC829_RS50025 (BjapCC829_50025) | 56347..56715 | + | 369 | WP_231145972.1 | hypothetical protein | - |
| BjapCC829_RS50030 (BjapCC829_50030) | 57489..58619 | - | 1131 | WP_231145973.1 | IS630 family transposase ISAzo9 | Transposase |
| BjapCC829_RS50035 (BjapCC829_50035) | 58658..58942 | + | 285 | WP_231144118.1 | MarR family transcriptional regulator | - |
| BjapCC829_RS50040 (BjapCC829_50040) | 58976..59794 | + | 819 | Protein_63 | 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase | - |
| BjapCC829_RS50045 (BjapCC829_50045) | 60009..60199 | - | 191 | Protein_64 | IS6 family transposase ISApr5 | Transposase |
| BjapCC829_RS50050 (BjapCC829_50050) | 60506..61276 | + | 771 | WP_231145974.1 | Leukotoxin | VF |
| BjapCC829_RS50055 (BjapCC829_50055) | 61610..61807 | + | 198 | Protein_66 | type I secretion system permease/ATPase | - |
| BjapCC829_RS50060 (BjapCC829_50060) | 62496..63092 | - | 597 | WP_231145975.1 | reverse transcriptase domain-containing protein | - |
| BjapCC829_RS50065 (BjapCC829_50065) | 63364..65541 | + | 2178 | WP_231145976.1 | recombinase family protein | - |
| BjapCC829_RS50070 (BjapCC829_50070) | 65484..65753 | - | 270 | WP_231145977.1 | hypothetical protein | - |
| BjapCC829_RS50075 (BjapCC829_50075) | 66234..67553 | - | 1320 | WP_231145978.1 | group II intron reverse transcriptase/maturase | - |
| BjapCC829_RS50080 (BjapCC829_50080) | 68406..69518 | + | 1113 | Protein_71 | IS256 family transposase ISNha10 | Transposase |
| BjapCC829_RS50085 (BjapCC829_50085) | 69596..70633 | + | 1038 | WP_231145979.1 | IS110 family transposase ISMlo2 | Transposase |
| BjapCC829_RS50090 (BjapCC829_50090) | 70901..71047 | + | 147 | Protein_73 | IS256 family transposase | - |
| BjapCC829_RS50095 (BjapCC829_50095) | 71544..72311 | + | 768 | Protein_74 | IS21 family transposase | - |
| BjapCC829_RS50100 (BjapCC829_50100) | 72330..74396 | - | 2067 | WP_231145980.1 | recombinase family protein | - |
| BjapCC829_RS50105 (BjapCC829_50105) | 74389..74625 | - | 237 | WP_231144201.1 | hypothetical protein | - |
| BjapCC829_RS50110 (BjapCC829_50110) | 74649..75125 | - | 477 | WP_231144202.1 | IS481 family transposase ISMav2 | Transposase |
| BjapCC829_RS50115 (BjapCC829_50115) | 75290..75556 | - | 267 | WP_231145826.1 | DUF5372 family protein | - |
| BjapCC829_RS50120 (BjapCC829_50120) | 75601..75978 | + | 378 | Protein_79 | IS21 family transposase ISBmu3 | Transposase |
| BjapCC829_RS50125 (BjapCC829_50125) | 76150..76383 | + | 234 | Protein_80 | IS3 family transposase ISRj2 | Transposase |
| BjapCC829_RS50130 (BjapCC829_50130) | 76571..77835 | - | 1265 | Protein_81 | IS256 family transposase ISNha10 | Transposase |
| BjapCC829_RS50135 (BjapCC829_50135) | 78042..79049 | - | 1008 | WP_231145981.1 | ISNCY family transposase ISBj12 | Transposase |
| BjapCC829_RS50140 (BjapCC829_50140) | 79046..80962 | - | 1917 | WP_231145982.1 | Protein VirD4 | VF |
| BjapCC829_RS50145 (BjapCC829_50145) | 80949..81164 | - | 216 | WP_035681106.1 | type IV conjugative transfer system coupling protein TraD | - |
| BjapCC829_RS50150 (BjapCC829_50150) | 81169..81465 | - | 297 | WP_231145983.1 | TraC family protein | - |
| BjapCC829_RS50155 (BjapCC829_50155) | 81743..85051 | + | 3309 | WP_231145984.1 | ATP-dependent RecD-like DNA helicase | Relaxase |
| BjapCC829_RS50160 (BjapCC829_50160) | 85111..85647 | + | 537 | WP_231145985.1 | conjugative transfer signal peptidase TraF | - |
| BjapCC829_RS50165 (BjapCC829_50165) | 85568..86140 | + | 573 | Protein_88 | nitrilase-related carbon-nitrogen hydrolase | - |
| BjapCC829_RS50170 (BjapCC829_50170) | 86212..86823 | + | 612 | WP_231145986.1 | TraH family protein | - |
| BjapCC829_RS50175 (BjapCC829_50175) | 86856..87242 | - | 387 | WP_231145987.1 | type II toxin-antitoxin system VapC family toxin | - |
| BjapCC829_RS50180 (BjapCC829_50180) | 87239..87400 | - | 162 | WP_231145988.1 | type II toxin-antitoxin system VapB family antitoxin | - |
| BjapCC829_RS50185 (BjapCC829_50185) | 87400..87498 | - | 99 | Protein_92 | IS5/IS1182 family transposase | - |
| BjapCC829_RS50190 (BjapCC829_50190) | 87827..88015 | - | 189 | Protein_93 | IS110 family transposase ISAtu7 | Transposase |
| BjapCC829_RS50195 (BjapCC829_50195) | 88256..88498 | + | 243 | Protein_94 | IS256 family transposase ISMdi13 | Transposase |
| BjapCC829_RS50200 (BjapCC829_50200) | 88642..91077 | - | 2436 | WP_231145989.1 | DNA topoisomerase | - |
| BjapCC829_RS50205 (BjapCC829_50205) | 91188..91369 | + | 182 | Protein_96 | hypothetical protein | - |
| BjapCC829_RS50210 (BjapCC829_50210) | 91415..91516 | + | 102 | Protein_97 | IS5 family transposase ISMdi21 | Transposase |
| BjapCC829_RS50215 (BjapCC829_50215) | 91771..94581 | - | 2811 | WP_231145990.1 | hsp70 family protein | - |
| BjapCC829_RS50220 (BjapCC829_50220) | 94609..96444 | - | 1836 | WP_231145991.1 | Hsp70 family protein | - |
| BjapCC829_RS50225 (BjapCC829_50225) | 96560..97180 | - | 621 | WP_231145992.1 | DUF2760 domain-containing protein | - |
| BjapCC829_RS50230 (BjapCC829_50230) | 97336..97620 | - | 285 | WP_231145993.1 | MarR family transcriptional regulator | - |
| BjapCC829_RS50235 (BjapCC829_50235) | 97659..98788 | + | 1130 | Protein_102 | IS630 family transposase ISAzo9 | Transposase |
| BjapCC829_RS50240 (BjapCC829_50240) | 99409..100707 | - | 1299 | WP_231145994.1 | Type IV secretion system protein virB10 | VF |
| BjapCC829_RS50245 (BjapCC829_50245) | 100720..101172 | - | 453 | WP_231145995.1 | conjugal transfer protein TrbH | - |
| BjapCC829_RS50250 (BjapCC829_50250) | 101175..102014 | - | 840 | WP_231145996.1 | hypothetical protein | VF |
| BjapCC829_RS50255 (BjapCC829_50255) | 102030..102692 | - | 663 | WP_231145997.1 | conjugal transfer protein TrbF | - |
| BjapCC829_RS50260 (BjapCC829_50260) | 102735..103886 | - | 1152 | WP_231146042.1 | P-type conjugative transfer protein TrbL | - |
| BjapCC829_RS50265 (BjapCC829_50265) | 103910..104095 | - | 186 | WP_231145998.1 | DUF2749 domain-containing protein | - |
| BjapCC829_RS50270 (BjapCC829_50270) | 104092..104889 | - | 798 | WP_231145999.1 | P-type conjugative transfer protein TrbJ | - |
| BjapCC829_RS50275 (BjapCC829_50275) | 104861..107314 | - | 2454 | WP_231146000.1 | conjugal transfer protein TrbE | - |
| BjapCC829_RS50280 (BjapCC829_50280) | 107323..107622 | - | 300 | WP_231146001.1 | conjugal transfer protein TrbD | - |
| BjapCC829_RS50285 (BjapCC829_50285) | 107615..107992 | - | 378 | WP_231146002.1 | TrbC/VirB2 family protein | - |
| BjapCC829_RS50290 (BjapCC829_50290) | 107982..108950 | - | 969 | WP_231146003.1 | Type IV secretion system protein VirB11 | VF |
| BjapCC829_RS50295 (BjapCC829_50295) | 109069..109536 | - | 468 | WP_231146004.1 | acyl-homoserine-lactone synthase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|