MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 34857 bp
Accession: NZ_CP088019 Location: 3121935..3156791 Organism: Pectobacterium carotovorum strain 25.1 Replicon: chromosome
Accession: NZ_CP088019 Location: 3121935..3156791 Organism: Pectobacterium carotovorum strain 25.1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LQF52_RS14150 (LQF52_14150) | 3117501..3117725 | + | 225 | WP_010279363.1 | DUF2594 family protein | - |
| LQF52_RS14155 (LQF52_14155) | 3117819..3118106 | - | 288 | WP_010308281.1 | hypothetical protein | - |
| LQF52_RS14165 (LQF52_14165) | 3118985..3120397 | + | 1413 | WP_039471419.1 | D-serine/D-alanine/glycine transporter | - |
| LQF52_RS14170 (LQF52_14170) | 3120568..3120834 | - | 267 | WP_010308275.1 | anti-adapter protein IraP | - |
| LQF52_RS14175 (LQF52_14175) | 3121226..3121495 | - | 270 | Protein_2785 | LysR family transcriptional regulator | - |
| LQF52_RS14185 (LQF52_14185) | 3122112..3123383 | + | 1272 | WP_231051683.1 | Prophage integrase IntA ; Integrase | Integrase |
| LQF52_RS14190 (LQF52_14190) | 3123517..3123831 | - | 315 | WP_039516912.1 | helix-turn-helix transcriptional regulator | - |
| LQF52_RS14195 (LQF52_14195) | 3124016..3124330 | - | 315 | WP_038667684.1 | helix-turn-helix transcriptional regulator | - |
| LQF52_RS14200 (LQF52_14200) | 3124477..3124749 | + | 273 | WP_039516911.1 | helix-turn-helix transcriptional regulator | - |
| LQF52_RS14205 (LQF52_14205) | 3125164..3126078 | + | 915 | WP_052234738.1 | hypothetical protein | - |
| LQF52_RS14210 (LQF52_14210) | 3126232..3126426 | + | 195 | WP_015730137.1 | AlpA family transcriptional regulator | - |
| LQF52_RS14215 (LQF52_14215) | 3126443..3127027 | + | 585 | WP_039545151.1 | DUF2857 domain-containing protein | - |
| LQF52_RS14220 (LQF52_14220) | 3127017..3127226 | + | 210 | WP_015730135.1 | TraR/DksA family transcriptional regulator | - |
| LQF52_RS14225 (LQF52_14225) | 3127702..3128055 | - | 354 | WP_039545153.1 | helix-turn-helix domain-containing protein | - |
| LQF52_RS14230 (LQF52_14230) | 3128186..3128611 | - | 426 | WP_039504562.1 | ester cyclase | - |
| LQF52_RS14235 (LQF52_14235) | 3129169..3129759 | - | 591 | WP_052234739.1 | TetR/AcrR family transcriptional regulator | - |
| LQF52_RS14240 (LQF52_14240) | 3129883..3130758 | - | 876 | WP_039545154.1 | NmrA family NAD(P)-binding protein | - |
| LQF52_RS14245 (LQF52_14245) | 3131085..3131942 | - | 858 | WP_039545157.1 | HNH endonuclease signature motif containing protein | - |
| LQF52_RS14250 (LQF52_14250) | 3131942..3133459 | - | 1518 | WP_039545159.1 | AAA family ATPase | - |
| LQF52_RS14255 (LQF52_14255) | 3134067..3134288 | + | 222 | WP_039516906.1 | hypothetical protein | - |
| LQF52_RS14260 (LQF52_14260) | 3134367..3135032 | + | 666 | WP_039516905.1 | Type IV secretion system protein virB1 | VF |
| LQF52_RS14265 (LQF52_14265) | 3135029..3135310 | + | 282 | WP_086002448.1 | TrbC/VirB2 family protein | - |
| LQF52_RS14270 (LQF52_14270) | 3135320..3138067 | + | 2748 | WP_039516904.1 | Type IV secretion system protein virB4 | VF |
| LQF52_RS14275 (LQF52_14275) | 3138091..3138807 | + | 717 | WP_039516903.1 | type IV secretion system protein | - |
| LQF52_RS14280 (LQF52_14280) | 3138818..3139042 | + | 225 | WP_072036273.1 | EexN family lipoprotein | - |
| LQF52_RS14285 (LQF52_14285) | 3139054..3140094 | + | 1041 | WP_039516902.1 | type IV secretion system protein | - |
| LQF52_RS14290 (LQF52_14290) | 3140179..3140319 | + | 141 | WP_165572861.1 | hypothetical protein | - |
| LQF52_RS14295 (LQF52_14295) | 3140312..3140995 | + | 684 | WP_039516901.1 | Type IV secretion system protein PtlE | VF |
| LQF52_RS14300 (LQF52_14300) | 3140992..3141885 | + | 894 | WP_174435952.1 | P-type conjugative transfer protein VirB9 | - |
| LQF52_RS14305 (LQF52_14305) | 3141882..3143114 | + | 1233 | WP_039516899.1 | Type IV secretion system protein virB10 | VF |
| LQF52_RS14310 (LQF52_14310) | 3143104..3144120 | + | 1017 | WP_039516898.1 | Type IV secretion system protein VirB11 | VF |
| LQF52_RS14315 (LQF52_14315) | 3144164..3144466 | + | 303 | WP_231051684.1 | conjugal transfer protein | - |
| LQF52_RS14320 (LQF52_14320) | 3145194..3147056 | + | 1863 | WP_039516896.1 | type IV secretory system conjugative DNA transfer family protein | - |
| LQF52_RS14325 (LQF52_14325) | 3147065..3147811 | + | 747 | WP_039516895.1 | MobC family replication-relaxation protein | - |
| LQF52_RS14330 (LQF52_14330) | 3148087..3148935 | - | 849 | WP_039516894.1 | hypothetical protein | - |
| LQF52_RS14335 (LQF52_14335) | 3149014..3149895 | - | 882 | WP_039516893.1 | hypothetical protein | - |
| LQF52_RS14340 (LQF52_14340) | 3150458..3150772 | - | 315 | WP_039360030.1 | CcdB family protein | Toxin Detail |
| LQF52_RS14345 (LQF52_14345) | 3150775..3151011 | - | 237 | WP_014699357.1 | type II toxin-antitoxin system CcdA family antitoxin | Antitoxin Detail |
| LQF52_RS14350 (LQF52_14350) | 3151330..3152274 | - | 945 | WP_039516892.1 | zincin-like metallopeptidase domain-containing protein | - |
| LQF52_RS14355 (LQF52_14355) | 3152897..3154087 | + | 1191 | WP_039516891.1 | hypothetical protein | - |
| LQF52_RS14360 (LQF52_14360) | 3154337..3156463 | + | 2127 | WP_039545165.1 | CHAT domain-containing protein | - |
| LQF52_RS14365 (LQF52_14365) | 3157175..3158365 | + | 1191 | WP_039506075.1 | CocE/NonD family hydrolase | - |
| LQF52_RS14370 (LQF52_14370) | 3158436..3159653 | - | 1218 | WP_039545532.1 | multidrug effflux MFS transporter | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|