MGE detailed information
MGE type: Prophage MGE length: 47736 bp
Accession: NZ_CP087993 Location: 435449..483184 Organism: Xylella fastidiosa subsp. multiplex strain CFBP8416 Replicon: chromosome
Accession: NZ_CP087993 Location: 435449..483184 Organism: Xylella fastidiosa subsp. multiplex strain CFBP8416 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| XYFPCFBP8416_RS01750 (XYFPCFBP8416_001740) | 430952..431611 | - | 660 | WP_004085204.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| XYFPCFBP8416_RS01755 (XYFPCFBP8416_001745) | 431708..433624 | - | 1917 | WP_004085203.1 | phosphogluconate dehydratase | - |
| XYFPCFBP8416_RS01760 (XYFPCFBP8416_001750) | 433723..434442 | - | 720 | WP_004085202.1 | 6-phosphogluconolactonase | - |
| XYFPCFBP8416_RS01765 (XYFPCFBP8416_001755) | 434439..435452 | - | 1014 | WP_004085201.1 | glucokinase | - |
| XYFPCFBP8416_RS01770 (XYFPCFBP8416_001760) | 435449..436951 | - | 1503 | WP_004085200.1 | glucose-6-phosphate dehydrogenase | - |
| XYFPCFBP8416_RS01775 (XYFPCFBP8416_001765) | 437211..438305 | + | 1095 | WP_012337631.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| XYFPCFBP8416_RS01780 (XYFPCFBP8416_001770) | 438450..439310 | - | 861 | WP_021358464.1 | folate-binding protein YgfZ | - |
| XYFPCFBP8416_RS01785 (XYFPCFBP8416_001775) | 439620..439784 | + | 165 | WP_071869476.1 | DUF1674 domain-containing protein | - |
| XYFPCFBP8416_RS01790 (XYFPCFBP8416_001780) | 439842..440264 | + | 423 | WP_021358463.1 | succinate dehydrogenase, cytochrome b556 subunit | - |
| XYFPCFBP8416_RS01795 (XYFPCFBP8416_001785) | 440261..440644 | + | 384 | WP_004085197.1 | succinate dehydrogenase, hydrophobic membrane anchor protein | - |
| XYFPCFBP8416_RS01800 (XYFPCFBP8416_001790) | 440652..442442 | + | 1791 | WP_004085196.1 | succinate dehydrogenase flavoprotein subunit | - |
| XYFPCFBP8416_RS01805 (XYFPCFBP8416_001795) | 442463..443248 | + | 786 | WP_004085195.1 | succinate dehydrogenase iron-sulfur subunit | - |
| XYFPCFBP8416_RS01810 (XYFPCFBP8416_001800) | 443369..443617 | + | 249 | WP_004085194.1 | succinate dehydrogenase assembly factor 2 | - |
| XYFPCFBP8416_RS01815 (XYFPCFBP8416_001805) | 443568..444020 | + | 453 | WP_004085193.1 | hypothetical protein | - |
| XYFPCFBP8416_RS01820 (XYFPCFBP8416_001810) | 444046..445287 | + | 1242 | WP_004085192.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| XYFPCFBP8416_RS01825 (XYFPCFBP8416_001815) | 445280..446002 | + | 723 | WP_004085191.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| XYFPCFBP8416_RS01830 (XYFPCFBP8416_001820) | 446350..448827 | + | 2478 | WP_012337634.1 | DNA internalization-related competence protein ComEC/Rec2 | - |
| XYFPCFBP8416_RS01835 (XYFPCFBP8416_001825) | 448812..449474 | + | 663 | WP_004085189.1 | MotA/TolQ/ExbB proton channel family protein | - |
| XYFPCFBP8416_RS01840 (XYFPCFBP8416_001830) | 449479..449916 | + | 438 | WP_004089267.1 | biopolymer transporter ExbD | - |
| XYFPCFBP8416_RS01845 (XYFPCFBP8416_001835) | 449934..451682 | + | 1749 | WP_004085187.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| XYFPCFBP8416_RS01850 (XYFPCFBP8416_001840) | 451679..452698 | + | 1020 | WP_004085186.1 | Tetraacyldisaccharide 4'-kinase | VF |
| XYFPCFBP8416_RS01855 (XYFPCFBP8416_001845) | 453073..454155 | - | 1083 | WP_012337635.1 | phage late control D family protein | - |
| XYFPCFBP8416_RS01860 (XYFPCFBP8416_001850) | 454146..454364 | - | 219 | WP_004085341.1 | tail protein X | - |
| XYFPCFBP8416_RS01865 (XYFPCFBP8416_001855) | 454361..454843 | - | 483 | WP_012337636.1 | phage tail protein | - |
| XYFPCFBP8416_RS01870 (XYFPCFBP8416_001860) | 454840..457095 | - | 2256 | WP_228762217.1 | phage tail tape measure protein | - |
| XYFPCFBP8416_RS01875 (XYFPCFBP8416_001865) | 457186..457473 | - | 288 | WP_012337638.1 | phage tail assembly protein | - |
| XYFPCFBP8416_RS01880 (XYFPCFBP8416_001870) | 457476..457985 | - | 510 | WP_128283754.1 | phage major tail tube protein | - |
| XYFPCFBP8416_RS01885 (XYFPCFBP8416_001875) | 457985..459163 | - | 1179 | WP_154436952.1 | phage tail sheath family protein | - |
| XYFPCFBP8416_RS01890 (XYFPCFBP8416_001880) | 459228..460820 | - | 1593 | WP_154436954.1 | tail fiber domain-containing protein | - |
| XYFPCFBP8416_RS01895 (XYFPCFBP8416_001885) | 460828..461385 | - | 558 | WP_004086970.1 | phage tail protein I | - |
| XYFPCFBP8416_RS01900 (XYFPCFBP8416_001890) | 461378..462271 | - | 894 | WP_154436956.1 | baseplate J/gp47 family protein | - |
| XYFPCFBP8416_RS01905 (XYFPCFBP8416_001895) | 462271..462594 | - | 324 | WP_228762566.1 | GPW/gp25 family protein | - |
| XYFPCFBP8416_RS01910 (XYFPCFBP8416_001900) | 462743..463057 | + | 315 | WP_004087029.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| XYFPCFBP8416_RS01915 (XYFPCFBP8416_001905) | 463059..463340 | + | 282 | WP_004087027.1 | XRE family transcriptional regulator | - |
| XYFPCFBP8416_RS01920 (XYFPCFBP8416_001910) | 463352..463651 | + | 300 | WP_004087025.1 | HigA family addiction module antitoxin | - |
| XYFPCFBP8416_RS01925 (XYFPCFBP8416_001915) | 463656..464243 | - | 588 | WP_128283746.1 | phage baseplate assembly protein V | - |
| XYFPCFBP8416_RS01930 (XYFPCFBP8416_001920) | 464240..464782 | - | 543 | WP_154436958.1 | hypothetical protein | - |
| XYFPCFBP8416_RS01935 (XYFPCFBP8416_001925) | 464758..465279 | - | 522 | WP_154436960.1 | hypothetical protein | - |
| XYFPCFBP8416_RS01940 (XYFPCFBP8416_001930) | 465276..465599 | - | 324 | WP_154436962.1 | hypothetical protein | - |
| XYFPCFBP8416_RS01945 (XYFPCFBP8416_001935) | 465599..465859 | - | 261 | WP_012337650.1 | hypothetical protein | - |
| XYFPCFBP8416_RS01950 (XYFPCFBP8416_001940) | 465877..467751 | - | 1875 | WP_154436964.1 | phage major capsid protein | - |
| XYFPCFBP8416_RS01955 (XYFPCFBP8416_001945) | 467748..469334 | - | 1587 | WP_154436966.1 | phage portal protein | - |
| XYFPCFBP8416_RS01960 (XYFPCFBP8416_001950) | 469331..469879 | - | 549 | WP_012337653.1 | hypothetical protein | - |
| XYFPCFBP8416_RS01965 (XYFPCFBP8416_001955) | 469883..471835 | - | 1953 | WP_154436968.1 | phage terminase large subunit family protein | - |
| XYFPCFBP8416_RS01970 (XYFPCFBP8416_001960) | 471828..472361 | - | 534 | WP_050765486.1 | terminase small subunit | - |
| XYFPCFBP8416_RS01975 (XYFPCFBP8416_001965) | 472534..472758 | - | 225 | WP_012337656.1 | hypothetical protein | - |
| XYFPCFBP8416_RS01980 (XYFPCFBP8416_001970) | 472760..473221 | - | 462 | WP_169709972.1 | hypothetical protein | - |
| XYFPCFBP8416_RS01985 (XYFPCFBP8416_001975) | 473211..473540 | - | 330 | WP_004085022.1 | phage holin family protein | - |
| XYFPCFBP8416_RS01990 (XYFPCFBP8416_001980) | 473533..474033 | - | 501 | WP_128382956.1 | lysozyme | - |
| XYFPCFBP8416_RS01995 (XYFPCFBP8416_001985) | 474133..474864 | - | 732 | WP_169709925.1 | site-specific DNA-methyltransferase | - |
| XYFPCFBP8416_RS02000 (XYFPCFBP8416_001990) | 475054..475389 | - | 336 | WP_004085025.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| XYFPCFBP8416_RS02005 (XYFPCFBP8416_001995) | 475386..475640 | - | 255 | WP_004089517.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| XYFPCFBP8416_RS02010 (XYFPCFBP8416_002000) | 475693..476415 | - | 723 | WP_012337661.1 | hypothetical protein | - |
| XYFPCFBP8416_RS02015 (XYFPCFBP8416_002005) | 476358..476705 | - | 348 | WP_162010044.1 | hypothetical protein | - |
| XYFPCFBP8416_RS02020 (XYFPCFBP8416_002010) | 476893..478161 | + | 1269 | WP_249328055.1 | DNA polymerase | - |
| XYFPCFBP8416_RS02025 (XYFPCFBP8416_002015) | 478161..478436 | + | 276 | WP_201884958.1 | VRR-NUC domain-containing protein | - |
| XYFPCFBP8416_RS02030 (XYFPCFBP8416_002020) | 478438..478842 | - | 405 | WP_004085029.1 | hypothetical protein | - |
| XYFPCFBP8416_RS02035 (XYFPCFBP8416_002025) | 478927..480345 | + | 1419 | WP_169709926.1 | DEAD/DEAH box helicase | - |
| XYFPCFBP8416_RS02040 (XYFPCFBP8416_002030) | 480342..480506 | + | 165 | WP_004086189.1 | hypothetical protein | - |
| XYFPCFBP8416_RS02045 (XYFPCFBP8416_002035) | 480499..480747 | + | 249 | WP_004086191.1 | DUF4224 domain-containing protein | - |
| XYFPCFBP8416_RS02050 (XYFPCFBP8416_002040) | 480747..481766 | + | 1020 | WP_169709927.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| XYFPCFBP8416_RS02055 (XYFPCFBP8416_002045) | 482543..483184 | + | 642 | WP_004085684.1 | Iron-sulfur cluster carrier protein | VF |
| XYFPCFBP8416_RS02060 (XYFPCFBP8416_002050) | 483212..483688 | + | 477 | WP_004085683.1 | histidine phosphatase family protein | - |
| XYFPCFBP8416_RS02065 (XYFPCFBP8416_002055) | 483693..484265 | + | 573 | WP_004085682.1 | YceI family protein | - |
| XYFPCFBP8416_RS02070 (XYFPCFBP8416_002060) | 484262..486220 | + | 1959 | WP_272696034.1 | phospholipase D family protein | - |
| XYFPCFBP8416_RS02075 (XYFPCFBP8416_002065) | 487207..487599 | - | 393 | WP_071869548.1 | helix-turn-helix transcriptional regulator | - |
| XYFPCFBP8416_RS02080 (XYFPCFBP8416_002070) | 487869..488140 | + | 272 | Protein_392 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|