MGE detailed information
MGE type: Conjugative plasmid MGE length: 32575 bp
Accession: NZ_CP087697 Location: 1..32575 Organism: Xylella taiwanensis strain PLS16B Replicon: plasmid pPLS16B
Accession: NZ_CP087697 Location: 1..32575 Organism: Xylella taiwanensis strain PLS16B Replicon: plasmid pPLS16B
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH57_RS11955 (LPH57_11955) | 2..802 | + | 801 | WP_230428322.1 | replication initiation protein | - |
| LPH57_RS11960 (LPH57_11960) | 937..1209 | + | 273 | WP_230428323.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| LPH57_RS11965 (LPH57_11965) | 1197..1487 | + | 291 | WP_230428324.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LPH57_RS11970 (LPH57_11970) | 1550..1810 | + | 261 | WP_230428325.1 | hypothetical protein | - |
| LPH57_RS11975 (LPH57_11975) | 1871..2041 | + | 171 | WP_230428326.1 | hypothetical protein | - |
| LPH57_RS11980 (LPH57_11980) | 2050..2550 | + | 501 | WP_230428327.1 | hypothetical protein | - |
| LPH57_RS11985 (LPH57_11985) | 2550..2858 | + | 309 | WP_230428328.1 | TrbC/VirB2 family protein | - |
| LPH57_RS11990 (LPH57_11990) | 2863..3246 | + | 384 | WP_230428329.1 | VirB3 family type IV secretion system protein | - |
| LPH57_RS11995 (LPH57_11995) | 3209..5623 | + | 2415 | WP_230428330.1 | Type IV secretion system protein virB4 | VF |
| LPH57_RS12000 (LPH57_12000) | 5626..6291 | + | 666 | WP_230428331.1 | Type IV secretion system protein virB5 | VF |
| LPH57_RS12005 (LPH57_12005) | 6261..6554 | + | 294 | WP_230428332.1 | hypothetical protein | - |
| LPH57_RS12010 (LPH57_12010) | 6558..7574 | + | 1017 | WP_230428333.1 | type IV secretion system protein | - |
| LPH57_RS12015 (LPH57_12015) | 7578..8297 | + | 720 | WP_230428334.1 | Type IV secretion system protein virB8 | VF |
| LPH57_RS12020 (LPH57_12020) | 8294..9079 | + | 786 | WP_230428335.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LPH57_RS12025 (LPH57_12025) | 9076..10407 | + | 1332 | WP_230428336.1 | Type IV secretion system protein virB10 | VF |
| LPH57_RS12030 (LPH57_12030) | 10385..11428 | + | 1044 | WP_230428337.1 | Type IV secretion system protein VirB11 | VF |
| LPH57_RS12035 (LPH57_12035) | 11425..13701 | + | 2277 | WP_230428338.1 | Protein VirD4 | VF |
| LPH57_RS12040 (LPH57_12040) | 13714..14823 | + | 1110 | WP_230428339.1 | hypothetical protein | - |
| LPH57_RS12045 (LPH57_12045) | 14823..15347 | + | 525 | WP_230428340.1 | hypothetical protein | - |
| LPH57_RS12050 (LPH57_12050) | 15344..15679 | + | 336 | WP_230428342.1 | Tn3 family transposase TnpA_ISThsp9 | Transposase |
| LPH57_RS12055 (LPH57_12055) | 15705..16037 | + | 333 | WP_230430890.1 | hypothetical protein | - |
| LPH57_RS12060 (LPH57_12060) | 16626..16922 | + | 297 | WP_230428302.1 | hypothetical protein | - |
| LPH57_RS12065 (LPH57_12065) | 16982..17629 | - | 648 | WP_230428303.1 | hypothetical protein | - |
| LPH57_RS12070 (LPH57_12070) | 17626..18735 | - | 1110 | WP_230428304.1 | hypothetical protein | - |
| LPH57_RS12075 (LPH57_12075) | 18794..19018 | - | 225 | WP_230428305.1 | hypothetical protein | - |
| LPH57_RS12080 (LPH57_12080) | 19345..20382 | - | 1038 | WP_230428306.1 | hypothetical protein | - |
| LPH57_RS12085 (LPH57_12085) | 20906..21205 | + | 300 | WP_230428307.1 | hypothetical protein | - |
| LPH57_RS12090 (LPH57_12090) | 21220..21582 | + | 363 | WP_230428308.1 | hypothetical protein | - |
| LPH57_RS12095 (LPH57_12095) | 21575..22183 | + | 609 | WP_230428309.1 | Tn3 family transposase ISPsy42 | Transposase |
| LPH57_RS12100 (LPH57_12100) | 22670..23803 | - | 1134 | WP_230428310.1 | T-DNA border endonuclease VirD2 | Relaxase |
| LPH57_RS12105 (LPH57_12105) | 23819..24919 | - | 1101 | WP_230428311.1 | zeta toxin family protein | - |
| LPH57_RS12110 (LPH57_12110) | 24925..25185 | - | 261 | WP_230428312.1 | antitoxin | - |
| LPH57_RS12115 (LPH57_12115) | 25204..25785 | - | 582 | WP_230428313.1 | hypothetical protein | Relaxase |
| LPH57_RS12120 (LPH57_12120) | 26193..26453 | + | 261 | WP_230428314.1 | hypothetical protein | - |
| LPH57_RS12125 (LPH57_12125) | 26466..27218 | + | 753 | WP_230428315.1 | conjugal transfer protein TraL | - |
| LPH57_RS12130 (LPH57_12130) | 27219..27647 | + | 429 | WP_230428316.1 | hypothetical protein | - |
| LPH57_RS12135 (LPH57_12135) | 27754..28962 | + | 1209 | WP_230428317.1 | IS200-IS605 family transposase IS609 | Transposase |
| LPH57_RS12140 (LPH57_12140) | 28947..29075 | - | 129 | WP_230428318.1 | type II toxin-antitoxin system MqsA family antitoxin | - |
| LPH57_RS12145 (LPH57_12145) | 29151..29663 | - | 513 | WP_230428319.1 | GNAT family N-acetyltransferase | - |
| LPH57_RS12150 (LPH57_12150) | 29660..29944 | - | 285 | WP_230428320.1 | DUF1778 domain-containing protein | - |
| LPH57_RS12155 (LPH57_12155) | 30690..31775 | - | 1086 | WP_230428321.1 | replication protein RepA | - |
| LPH57_RS12160 (LPH57_12160) | 31759..32070 | - | 312 | Protein_41 | Tn3 family transposase TnpR_TnEc1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|