MGE detailed information
MGE type: Prophage MGE length: 19386 bp
Accession: NZ_CP087685 Location: 965..20350 Organism: Xylella taiwanensis strain PLS4A Replicon: chromosome
Accession: NZ_CP087685 Location: 965..20350 Organism: Xylella taiwanensis strain PLS4A Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH40_RS00005 (LPH40_00005) | 344..616 | - | 273 | WP_038272512.1 | type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family | - |
| LPH40_RS00010 (LPH40_00010) | 616..876 | - | 261 | WP_038272513.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | - |
| LPH40_RS00015 (LPH40_00015) | 965..2092 | - | 1128 | WP_114867127.1 | zonular occludens toxin domain-containing protein | - |
| LPH40_RS00020 (LPH40_00020) | 2105..2449 | - | 345 | WP_038273069.1 | DUF2523 family protein | - |
| LPH40_RS00025 (LPH40_00025) | 2452..3837 | - | 1386 | WP_230428213.1 | furin-like repeat-containing protein | - |
| LPH40_RS00030 (LPH40_00030) | 4017..4253 | - | 237 | WP_230428212.1 | major capsid protein | - |
| LPH40_RS00035 (LPH40_00035) | 4262..4468 | - | 207 | WP_038273075.1 | hypothetical protein | - |
| LPH40_RS00040 (LPH40_00040) | 4471..4785 | - | 315 | WP_230428211.1 | hypothetical protein | - |
| LPH40_RS00045 (LPH40_00045) | 5061..5648 | - | 588 | WP_038273076.1 | hypothetical protein | - |
| LPH40_RS00050 (LPH40_00050) | 5845..5988 | - | 144 | WP_160165233.1 | hypothetical protein | - |
| LPH40_RS00055 (LPH40_00055) | 6108..6308 | - | 201 | WP_038273077.1 | hypothetical protein | - |
| LPH40_RS00060 (LPH40_00060) | 6357..6620 | - | 264 | WP_162814095.1 | hypothetical protein | - |
| LPH40_RS00065 (LPH40_00065) | 6624..6785 | - | 162 | WP_160165236.1 | hypothetical protein | - |
| LPH40_RS00070 (LPH40_00070) | 7075..7404 | + | 330 | WP_230428286.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LPH40_RS00075 (LPH40_00075) | 7493..7993 | - | 501 | Protein_14 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LPH40_RS00080 (LPH40_00080) | 8441..8662 | + | 222 | WP_038273164.1 | antitoxin MazE family protein | Antitoxin Detail |
| LPH40_RS00085 (LPH40_00085) | 8659..8982 | + | 324 | WP_038273166.1 | type II toxin-antitoxin system PemK/MazF family toxin | Toxin Detail |
| LPH40_RS00090 (LPH40_00090) | 9083..10231 | - | 1149 | WP_069636227.1 | zonular occludens toxin domain-containing protein | - |
| LPH40_RS00095 (LPH40_00095) | 10231..10572 | - | 342 | WP_038273089.1 | DUF2523 family protein | - |
| LPH40_RS00100 (LPH40_00100) | 10576..11643 | - | 1068 | WP_152536670.1 | virulence factor TspB C-terminal domain-related protein | - |
| LPH40_RS00105 (LPH40_00105) | 12111..12329 | - | 219 | WP_051482398.1 | major capsid protein | - |
| LPH40_RS00110 (LPH40_00110) | 12338..12547 | - | 210 | WP_230428208.1 | hypothetical protein | - |
| LPH40_RS00115 (LPH40_00115) | 12547..12840 | - | 294 | WP_038273093.1 | single-stranded DNA-binding protein | - |
| LPH40_RS00120 (LPH40_00120) | 12886..14034 | - | 1149 | WP_038273097.1 | replication initiation factor domain-containing protein | - |
| LPH40_RS00125 (LPH40_00125) | 14465..14647 | - | 183 | WP_114867130.1 | hypothetical protein | - |
| LPH40_RS00130 (LPH40_00130) | 14678..14902 | - | 225 | WP_160199341.1 | hypothetical protein | - |
| LPH40_RS00140 (LPH40_00140) | 15549..16217 | - | 669 | WP_038271631.1 | 7-cyano-7-deazaguanine synthase QueC | - |
| LPH40_RS00145 (LPH40_00145) | 17072..18841 | + | 1770 | WP_038271663.1 | aspartate--tRNA ligase | - |
| LPH40_RS00150 (LPH40_00150) | 19163..19990 | - | 828 | WP_038271629.1 | SDR family oxidoreductase | - |
| LPH40_RS00155 (LPH40_00155) | 20135..20427 | + | 293 | Protein_29 | Tn3 family transposase TnpR_TnAs2 | Transposase |
| LPH40_RS00160 (LPH40_00160) | 20454..21633 | + | 1180 | Protein_30 | Tn3 family transposase | - |
| LPH40_RS00165 (LPH40_00165) | 21677..23194 | - | 1518 | WP_038271625.1 | fumarate hydratase | - |
| LPH40_RS00170 (LPH40_00170) | 23205..23450 | - | 246 | WP_038271623.1 | hypothetical protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|