MGE detailed information
MGE type: Conjugative plasmid MGE length: 32575 bp
Accession: NZ_CP087684 Location: 1..32575 Organism: Xylella taiwanensis strain PLS1135 Replicon: plasmid pPLS1135
Accession: NZ_CP087684 Location: 1..32575 Organism: Xylella taiwanensis strain PLS1135 Replicon: plasmid pPLS1135
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LPH44_RS11920 (LPH44_11920) | 2..802 | + | 801 | WP_230428322.1 | replication initiation protein | - |
| LPH44_RS11925 (LPH44_11925) | 937..1209 | + | 273 | WP_230428323.1 | CopG family ribbon-helix-helix protein | Antitoxin Detail |
| LPH44_RS11930 (LPH44_11930) | 1197..1487 | + | 291 | WP_230428324.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LPH44_RS11935 (LPH44_11935) | 1550..1810 | + | 261 | WP_230428325.1 | hypothetical protein | - |
| LPH44_RS11940 (LPH44_11940) | 1871..2041 | + | 171 | WP_230428326.1 | hypothetical protein | - |
| LPH44_RS11945 (LPH44_11945) | 2050..2550 | + | 501 | WP_230428327.1 | hypothetical protein | - |
| LPH44_RS11950 (LPH44_11950) | 2550..2858 | + | 309 | WP_230428328.1 | TrbC/VirB2 family protein | - |
| LPH44_RS11955 (LPH44_11955) | 2863..3246 | + | 384 | WP_230428329.1 | VirB3 family type IV secretion system protein | - |
| LPH44_RS11960 (LPH44_11960) | 3209..5623 | + | 2415 | WP_230428330.1 | Type IV secretion system protein virB4 | VF |
| LPH44_RS11965 (LPH44_11965) | 5626..6291 | + | 666 | WP_230428331.1 | Type IV secretion system protein virB5 | VF |
| LPH44_RS11970 (LPH44_11970) | 6261..6554 | + | 294 | WP_230428332.1 | hypothetical protein | - |
| LPH44_RS11975 (LPH44_11975) | 6558..7574 | + | 1017 | WP_230428333.1 | type IV secretion system protein | - |
| LPH44_RS11980 (LPH44_11980) | 7578..8297 | + | 720 | WP_230428334.1 | Type IV secretion system protein virB8 | VF |
| LPH44_RS11985 (LPH44_11985) | 8294..9079 | + | 786 | WP_230428335.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LPH44_RS11990 (LPH44_11990) | 9076..10407 | + | 1332 | WP_230428336.1 | Type IV secretion system protein virB10 | VF |
| LPH44_RS11995 (LPH44_11995) | 10385..11428 | + | 1044 | WP_230428337.1 | Type IV secretion system protein VirB11 | VF |
| LPH44_RS12000 (LPH44_12000) | 11425..13701 | + | 2277 | WP_230428338.1 | Protein VirD4 | VF |
| LPH44_RS12005 (LPH44_12005) | 13714..14823 | + | 1110 | WP_230428339.1 | hypothetical protein | - |
| LPH44_RS12010 (LPH44_12010) | 14823..15347 | + | 525 | WP_230428340.1 | hypothetical protein | - |
| LPH44_RS12015 (LPH44_12015) | 15344..15679 | + | 336 | WP_230428342.1 | Tn3 family transposase TnpA_ISThsp9 | Transposase |
| LPH44_RS12020 (LPH44_12020) | 15633..16037 | + | 405 | WP_230428341.1 | hypothetical protein | - |
| LPH44_RS12025 (LPH44_12025) | 16500..16922 | + | 423 | WP_230439353.1 | hypothetical protein | - |
| LPH44_RS12030 (LPH44_12030) | 16982..17629 | - | 648 | WP_230428303.1 | hypothetical protein | - |
| LPH44_RS12035 (LPH44_12035) | 17626..18735 | - | 1110 | WP_230428304.1 | hypothetical protein | - |
| LPH44_RS12040 (LPH44_12040) | 18794..19018 | - | 225 | WP_230428305.1 | hypothetical protein | - |
| LPH44_RS12045 (LPH44_12045) | 19345..20382 | - | 1038 | WP_230428306.1 | hypothetical protein | - |
| LPH44_RS12050 (LPH44_12050) | 20906..21205 | + | 300 | WP_230428307.1 | hypothetical protein | - |
| LPH44_RS12055 (LPH44_12055) | 21220..21582 | + | 363 | WP_230428308.1 | hypothetical protein | - |
| LPH44_RS12060 (LPH44_12060) | 21575..22183 | + | 609 | WP_230428309.1 | Tn3 family transposase ISPsy42 | Transposase |
| LPH44_RS12065 (LPH44_12065) | 22670..23803 | - | 1134 | WP_230428310.1 | T-DNA border endonuclease VirD2 | Relaxase |
| LPH44_RS12070 (LPH44_12070) | 23819..24919 | - | 1101 | WP_230428311.1 | zeta toxin family protein | - |
| LPH44_RS12075 (LPH44_12075) | 24925..25185 | - | 261 | WP_230428312.1 | antitoxin | - |
| LPH44_RS12080 (LPH44_12080) | 25204..25767 | - | 564 | WP_230431745.1 | hypothetical protein | Relaxase |
| LPH44_RS12085 (LPH44_12085) | 26193..26453 | + | 261 | WP_230428314.1 | hypothetical protein | - |
| LPH44_RS12090 (LPH44_12090) | 26466..27218 | + | 753 | WP_230428315.1 | conjugal transfer protein TraL | - |
| LPH44_RS12095 (LPH44_12095) | 27219..27647 | + | 429 | WP_230428316.1 | hypothetical protein | - |
| LPH44_RS12100 (LPH44_12100) | 27754..28962 | + | 1209 | WP_230428317.1 | IS200-IS605 family transposase IS609 | Transposase |
| LPH44_RS12105 (LPH44_12105) | 28947..29075 | - | 129 | WP_230428318.1 | type II toxin-antitoxin system MqsA family antitoxin | - |
| LPH44_RS12110 (LPH44_12110) | 29151..29663 | - | 513 | WP_230428319.1 | GNAT family N-acetyltransferase | - |
| LPH44_RS12115 (LPH44_12115) | 29660..29944 | - | 285 | WP_230428320.1 | DUF1778 domain-containing protein | - |
| LPH44_RS12120 (LPH44_12120) | 30690..31775 | - | 1086 | WP_230428321.1 | replication protein RepA | - |
| LPH44_RS12125 (LPH44_12125) | 31759..32070 | - | 312 | Protein_41 | Tn3 family transposase TnpR_TnEc1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|