MGE detailed information
MGE type: Prophage MGE length: 46671 bp
Accession: NZ_CP087564 Location: 3560228..3606898 Organism: Escherichia coli strain CM2010-0578/1 Replicon: chromosome
Accession: NZ_CP087564 Location: 3560228..3606898 Organism: Escherichia coli strain CM2010-0578/1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOF66_RS17695 (3555619) | 3555619..3556116 | + | 498 | WP_001326644.1 | chorismate lyase | - |
| LOF66_RS17700 (3556129) | 3556129..3557001 | + | 873 | WP_000455227.1 | 4-hydroxybenzoate octaprenyltransferase | - |
| LOF66_RS17705 (3557156) | 3557156..3559579 | - | 2424 | WP_000017354.1 | glycerol-3-phosphate 1-O-acyltransferase PlsB | - |
| LOF66_RS17710 (3559750) | 3559750..3560118 | + | 369 | WP_000002907.1 | diacylglycerol kinase | - |
| LOF66_RS17715 (3560228) | 3560228..3560836 | + | 609 | WP_000646078.1 | transcriptional repressor LexA | - |
| LOF66_RS17720 (3560909) | 3560909..3562234 | + | 1326 | WP_001326646.1 | MATE family efflux transporter DinF | - |
| LOF66_RS17725 (3562350) | 3562350..3562559 | + | 210 | WP_001030593.1 | CsbD family protein | - |
| LOF66_RS17730 (3562601) | 3562601..3563116 | - | 516 | WP_001295691.1 | zinc uptake transcriptional repressor Zur | - |
| LOF66_RS17735 (3563434) | 3563434..3563688 | + | 255 | WP_000912571.1 | protein YjbL | - |
| LOF66_RS17740 (3563712) | 3563712..3564419 | + | 708 | WP_001311303.1 | DUF2713 domain-containing protein | - |
| LOF66_RS17745 (3564782) | 3564782..3564886 | + | 105 | Protein_3461 | tRNA-dihydrouridine synthase | - |
| LOF66_RS17750 (3565203) | 3565203..3565712 | + | 510 | WP_001339382.1 | Panacea domain-containing protein | Antitoxin Detail |
| LOF66_RS17755 (3565742) | 3565742..3566128 | + | 387 | WP_014640052.1 | hypothetical protein | Toxin Detail |
| LOF66_RS17760 (3566168) | 3566168..3566341 | + | 174 | WP_000390072.1 | hypothetical protein | - |
| LOF66_RS17765 (3566389) | 3566389..3566670 | - | 282 | WP_001093917.1 | pyocin activator PrtN family protein | - |
| LOF66_RS17770 (3566707) | 3566707..3567279 | - | 573 | WP_001061348.1 | 3'-5' exonuclease | - |
| LOF66_RS17775 (3567279) | 3567279..3568088 | - | 810 | WP_000206745.1 | hypothetical protein | - |
| LOF66_RS17780 (3568088) | 3568088..3568450 | - | 363 | WP_001242704.1 | hypothetical protein | - |
| LOF66_RS17785 (3568441) | 3568441..3568977 | - | 537 | WP_000008236.1 | 5'-deoxynucleotidase | - |
| LOF66_RS17790 (3569511) | 3569511..3570164 | - | 654 | WP_000981537.1 | S24 family peptidase | - |
| LOF66_RS17795 (3570260) | 3570260..3570457 | + | 198 | WP_001231956.1 | Cro/CI family transcriptional regulator | - |
| LOF66_RS17800 (3570485) | 3570485..3571069 | + | 585 | WP_000514174.1 | YmfL family putative regulatory protein | - |
| LOF66_RS17805 (3571245) | 3571245..3571424 | + | 180 | WP_001250269.1 | DUF4222 domain-containing protein | - |
| LOF66_RS17810 (3571414) | 3571414..3572355 | + | 942 | WP_000104941.1 | helix-turn-helix domain-containing protein | - |
| LOF66_RS17815 (3572352) | 3572352..3572846 | + | 495 | WP_001305611.1 | PerC family transcriptional regulator | - |
| LOF66_RS17820 (3572846) | 3572846..3573499 | + | 654 | WP_274480367.1 | phage N-6-adenine-methyltransferase | - |
| LOF66_RS17825 (3573496) | 3573496..3573822 | + | 327 | WP_000210154.1 | LexA family transcriptional regulator | - |
| LOF66_RS17830 (3573819) | 3573819..3574208 | + | 390 | WP_021512743.1 | RusA family crossover junction endodeoxyribonuclease | - |
| LOF66_RS17835 (3574228) | 3574228..3575037 | + | 810 | WP_001061438.1 | KilA-N domain-containing protein | - |
| LOF66_RS17840 (3575045) | 3575045..3576034 | + | 990 | WP_032176009.1 | DUF968 domain-containing protein | - |
| LOF66_RS17845 (3576048) | 3576048..3576800 | + | 753 | WP_058589848.1 | antitermination protein | - |
| LOF66_RS17850 (3576951) | 3576951..3577208 | + | 258 | WP_001569330.1 | hypothetical protein | - |
| LOF66_RS17855 (3577288) | 3577288..3577674 | + | 387 | WP_001283169.1 | phage holin family protein | - |
| LOF66_RS17860 (3577727) | 3577727..3577942 | + | 216 | WP_001471962.1 | phage holin family protein | - |
| LOF66_RS17865 (3577942) | 3577942..3578556 | + | 615 | WP_001075795.1 | glycoside hydrolase family 19 protein | - |
| LOF66_RS17870 (3578553) | 3578553..3579014 | + | 462 | WP_000858463.1 | lysis protein | - |
| LOF66_RS17875 (3579217) | 3579217..3579438 | + | 222 | WP_087900568.1 | KilA-N domain-containing protein | - |
| LOF66_RS17880 (3579416) | 3579416..3579748 | + | 333 | WP_001373281.1 | KilA-N domain-containing protein | - |
| LOF66_RS17885 (3579936) | 3579936..3580316 | + | 381 | WP_000999686.1 | Gp49 family protein | - |
| LOF66_RS17890 (3580479) | 3580479..3580829 | + | 351 | WP_001135096.1 | HNH endonuclease | - |
| LOF66_RS17895 (3580955) | 3580955..3581440 | + | 486 | WP_001569331.1 | phage terminase small subunit P27 family | - |
| LOF66_RS17900 (3581454) | 3581454..3583187 | + | 1734 | WP_000088150.1 | terminase large subunit | - |
| LOF66_RS17905 (3583199) | 3583199..3583381 | + | 183 | WP_000605606.1 | protein YmfR | - |
| LOF66_RS17910 (3583381) | 3583381..3584622 | + | 1242 | WP_001514795.1 | phage portal protein | - |
| LOF66_RS17915 (3584600) | 3584600..3585250 | + | 651 | WP_001193631.1 | HK97 family phage prohead protease | - |
| LOF66_RS17920 (3585265) | 3585265..3586470 | + | 1206 | WP_000257493.1 | phage major capsid protein | - |
| LOF66_RS17925 (3586519) | 3586519..3586719 | + | 201 | WP_000601362.1 | hypothetical protein | - |
| LOF66_RS17930 (3586722) | 3586722..3587045 | + | 324 | WP_089650267.1 | head-tail connector protein | - |
| LOF66_RS17935 (3587042) | 3587042..3587452 | + | 411 | WP_000702395.1 | phage head closure protein | - |
| LOF66_RS17940 (3587427) | 3587427..3587933 | + | 507 | WP_000224836.1 | hypothetical protein | - |
| LOF66_RS17945 (3587930) | 3587930..3588490 | + | 561 | WP_001569335.1 | hypothetical protein | - |
| LOF66_RS17950 (3588499) | 3588499..3588669 | + | 171 | WP_000497751.1 | DUF2635 domain-containing protein | - |
| LOF66_RS17955 (3588653) | 3588653..3590149 | + | 1497 | WP_000155737.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| LOF66_RS17960 (3590149) | 3590149..3590505 | + | 357 | WP_000090998.1 | phage tail tube protein | - |
| LOF66_RS17965 (3590505) | 3590505..3590774 | + | 270 | WP_000661054.1 | phage tail assembly protein | - |
| LOF66_RS17970 (3590916) | 3590916..3592748 | + | 1833 | WP_274480368.1 | phage tail tape measure protein | - |
| LOF66_RS17975 (3592848) | 3592848..3593342 | + | 495 | WP_001219112.1 | hypothetical protein | - |
| LOF66_RS17980 (3593433) | 3593433..3594761 | + | 1329 | WP_000219915.1 | DNA circularization N-terminal domain-containing protein | - |
| LOF66_RS17985 (3594758) | 3594758..3595837 | + | 1080 | WP_021567870.1 | phage tail protein | - |
| LOF66_RS17990 (3595837) | 3595837..3596385 | + | 549 | WP_001752126.1 | phage baseplate assembly protein V | - |
| LOF66_RS17995 (3596385) | 3596385..3596810 | + | 426 | WP_000424732.1 | phage GP46 family protein | - |
| LOF66_RS18000 (3596797) | 3596797..3597855 | + | 1059 | WP_001568408.1 | baseplate J/gp47 family protein | - |
| LOF66_RS18005 (3597846) | 3597846..3598430 | + | 585 | WP_000383572.1 | YmfQ family protein | - |
| LOF66_RS18010 (3598434) | 3598434..3599180 | + | 747 | WP_274480369.1 | integrase | - |
| LOF66_RS18015 (3599180) | 3599180..3599773 | + | 594 | WP_096324536.1 | tail fiber assembly protein | - |
| LOF66_RS18020 (3599745) | 3599745..3600185 | - | 441 | WP_061356435.1 | tail fiber assembly protein | - |
| LOF66_RS18025 (3600187) | 3600187..3600558 | - | 372 | WP_203369916.1 | hypothetical protein | - |
| LOF66_RS18030 (3600635) | 3600635..3601198 | + | 564 | WP_274480370.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| LOF66_RS18035 (3601223) | 3601223..3601345 | + | 123 | WP_001437322.1 | hypothetical protein | - |
| LOF66_RS18040 (3601342) | 3601342..3601590 | - | 249 | WP_001217553.1 | DinI-like family protein | - |
| LOF66_RS18045 (3601652) | 3601652..3602749 | - | 1098 | WP_001568412.1 | Tyrosine recombinase XerC ; Integrase | Integrase |
| LOF66_RS18050 (3602838) | 3602838..3603875 | + | 1038 | WP_000543828.1 | tRNA dihydrouridine(20/20a) synthase DusA | - |
| LOF66_RS18055 (3604009) | 3604009..3604251 | + | 243 | WP_000891404.1 | envelope stress response protein PspG | - |
| LOF66_RS18060 (3604417) | 3604417..3605400 | - | 984 | WP_000235508.1 | Quinone oxidoreductase 1 | VF |
| LOF66_RS18065 (3605483) | 3605483..3606898 | + | 1416 | WP_000918363.1 | replicative DNA helicase | - |
| LOF66_RS18070 (3606951) | 3606951..3608030 | + | 1080 | WP_001147328.1 | alanine racemase | - |
| LOF66_RS18075 (3608283) | 3608283..3609476 | + | 1194 | WP_000486985.1 | aromatic amino acid transaminase | - |
| LOF66_RS18080 (3609977) | 3609977..3610180 | - | 204 | WP_001321562.1 | protein YjbS | - |
| LOF66_RS18085 (3610582) | 3610582..3611295 | + | 714 | WP_001226928.1 | acid phosphatase AphA | - |
| LOF66_RS18090 (3611406) | 3611406..3611822 | + | 417 | WP_274480371.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|