MGE detailed information
MGE type: Prophage MGE length: 61192 bp
Accession: NZ_CP087564 Location: 1011902..1073093 Organism: Escherichia coli strain CM2010-0578/1 Replicon: chromosome
Accession: NZ_CP087564 Location: 1011902..1073093 Organism: Escherichia coli strain CM2010-0578/1 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOF66_RS05135 () | 1007758..1008558 | + | 801 | WP_000406926.1 | PTS mannose transporter subunit IIC | - |
| LOF66_RS05140 () | 1008571..1009422 | + | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| LOF66_RS05145 () | 1009477..1009935 | + | 459 | WP_000156255.1 | DUF986 family protein | - |
| LOF66_RS05150 () | 1010364..1010930 | + | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| LOF66_RS05155 () | 1010927..1011736 | - | 810 | WP_000010115.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LOF66_RS05160 () | 1011902..1012111 | - | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LOF66_RS05165 () | 1012124..1012267 | - | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| LOF66_RS05170 () | 1012937..1013224 | - | 288 | WP_001006866.1 | YebO family protein | - |
| LOF66_RS05175 () | 1013299..1013442 | - | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| LOF66_RS05180 () | 1013601..1013840 | + | 240 | WP_001211011.1 | YobH family protein | - |
| LOF66_RS05185 () | 1013984..1014775 | - | 792 | WP_001262203.1 | DNA-binding transcriptional regulator KdgR | - |
| LOF66_RS05190 () | 1014952..1016325 | + | 1374 | WP_001127216.1 | MFS transporter | - |
| LOF66_RS05195 () | 1016371..1017252 | - | 882 | WP_000984520.1 | protease HtpX | - |
| LOF66_RS05200 () | 1017444..1019492 | - | 2049 | WP_001055791.1 | carboxy terminal-processing peptidase | - |
| LOF66_RS05205 () | 1019512..1020210 | - | 699 | WP_000431381.1 | RNA chaperone ProQ | - |
| LOF66_RS05210 () | 1020307..1020804 | - | 498 | WP_001043877.1 | L-methionine (R)-S-oxide reductase | - |
| LOF66_RS05215 () | 1020934..1022217 | + | 1284 | WP_001207282.1 | membrane integrity lipid transport subunit YebS | - |
| LOF66_RS05220 () | 1022186..1024819 | + | 2634 | WP_001326728.1 | hypothetical protein | VF |
| LOF66_RS05225 () | 1024899..1026338 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LOF66_RS05230 () | 1026456..1026692 | + | 237 | WP_001295499.1 | YebV family protein | - |
| LOF66_RS05235 () | 1026797..1026988 | + | 192 | WP_000457842.1 | YebW family protein | - |
| LOF66_RS05240 () | 1026989..1027645 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| LOF66_RS05245 () | 1028110..1028663 | - | 554 | Protein_1036 | Tn3 family transposase TnpR_TnShfr1 | Transposase |
| LOF66_RS05250 () | 1028726..1029020 | + | 295 | Protein_1037 | phage tail protein | - |
| LOF66_RS05255 () | 1029204..1029799 | + | 596 | Protein_1038 | tail fiber assembly protein | - |
| LOF66_RS05260 () | 1029771..1030211 | - | 441 | WP_061702503.1 | tail fiber assembly protein | - |
| LOF66_RS05265 () | 1030214..1030909 | - | 696 | WP_274480419.1 | hypothetical protein | - |
| LOF66_RS05270 () | 1030909..1031589 | - | 681 | WP_000049950.1 | DUF2612 domain-containing protein | - |
| LOF66_RS05275 () | 1031586..1032785 | - | 1200 | WP_052905985.1 | baseplate J/gp47 family protein | - |
| LOF66_RS05280 () | 1032785..1033138 | - | 354 | WP_001270636.1 | hypothetical protein | - |
| LOF66_RS05285 () | 1033138..1033890 | - | 753 | WP_105960571.1 | Gp138 family membrane-puncturing spike protein | - |
| LOF66_RS05290 () | 1033957..1034322 | - | 366 | WP_000824817.1 | hypothetical protein | - |
| LOF66_RS05295 () | 1034335..1034679 | - | 345 | WP_105960570.1 | hypothetical protein | - |
| LOF66_RS05300 () | 1034682..1035752 | - | 1071 | WP_105960569.1 | hypothetical protein | - |
| LOF66_RS05305 () | 1035755..1036057 | - | 303 | WP_016233440.1 | hypothetical protein | - |
| LOF66_RS05310 () | 1036057..1036644 | - | 588 | WP_105960567.1 | hypothetical protein | - |
| LOF66_RS05315 () | 1036644..1038629 | - | 1986 | WP_044782169.1 | lytic transglycosylase catalytic | - |
| LOF66_RS05320 () | 1038619..1038795 | - | 177 | WP_087597341.1 | NTP pyrophosphohydrolase | - |
| LOF66_RS05325 () | 1038807..1039259 | - | 453 | WP_105960566.1 | hypothetical protein | - |
| LOF66_RS05330 () | 1039263..1039703 | - | 441 | WP_000109249.1 | DUF3277 family protein | - |
| LOF66_RS05335 () | 1039714..1040859 | - | 1146 | WP_175964656.1 | DUF3383 family protein | - |
| LOF66_RS05340 () | 1040863..1041426 | - | 564 | WP_096839017.1 | hypothetical protein | - |
| LOF66_RS05345 () | 1041401..1041790 | - | 390 | WP_274480420.1 | head-tail adaptor | - |
| LOF66_RS05350 () | 1041777..1042364 | - | 588 | WP_274480421.1 | hypothetical protein | - |
| LOF66_RS05355 () | 1042361..1042768 | - | 408 | WP_274480422.1 | DUF4054 domain-containing protein | - |
| LOF66_RS05360 () | 1042734..1043102 | - | 369 | WP_042969549.1 | hypothetical protein | - |
| LOF66_RS05365 () | 1043143..1044084 | - | 942 | WP_000627483.1 | DUF2184 domain-containing protein | - |
| LOF66_RS05370 () | 1044096..1044602 | - | 507 | WP_001066732.1 | hypothetical protein | - |
| LOF66_RS05375 () | 1044606..1045826 | - | 1221 | WP_274480423.1 | DUF2213 domain-containing protein | - |
| LOF66_RS05380 () | 1045841..1046575 | - | 735 | WP_105279609.1 | phage minor head protein | - |
| LOF66_RS05385 () | 1046466..1047932 | - | 1467 | WP_000113487.1 | DUF1073 domain-containing protein | - |
| LOF66_RS05390 () | 1047932..1049554 | - | 1623 | WP_097765002.1 | TerL protein | - |
| LOF66_RS05395 () | 1049557..1050108 | - | 552 | WP_001218996.1 | terminase small subunit | - |
| LOF66_RS05400 () | 1050128..1050676 | + | 549 | WP_000762846.1 | hypothetical protein | - |
| LOF66_RS05405 () | 1050809..1050994 | - | 186 | WP_072646368.1 | hypothetical protein | - |
| LOF66_RS05410 () | 1050975..1051253 | - | 279 | WP_173671027.1 | hypothetical protein | - |
| LOF66_RS05415 () | 1051138..1051530 | - | 393 | WP_274480424.1 | DUF2570 domain-containing protein | - |
| LOF66_RS05420 () | 1051514..1051990 | - | 477 | WP_001194114.1 | glycoside hydrolase family protein | - |
| LOF66_RS05425 () | 1051994..1052335 | - | 342 | WP_052934961.1 | phage holin, lambda family | - |
| LOF66_RS05430 () | 1052553..1052831 | + | 279 | WP_001519807.1 | hypothetical protein | - |
| LOF66_RS05435 () | 1052817..1053047 | - | 231 | WP_000675202.1 | hypothetical protein | - |
| LOF66_RS05440 () | 1053184..1053720 | - | 537 | WP_069723169.1 | DUF1133 family protein | - |
| LOF66_RS05445 () | 1053717..1054007 | - | 291 | WP_000228018.1 | DUF1364 domain-containing protein | - |
| LOF66_RS05450 () | 1054007..1054606 | - | 600 | WP_274480425.1 | DUF1367 family protein | - |
| LOF66_RS05455 () | 1054678..1054890 | - | 213 | WP_000411311.1 | hypothetical protein | - |
| LOF66_RS05460 () | 1055166..1055321 | - | 156 | WP_274480426.1 | type I toxin-antitoxin system toxin HokD | - |
| LOF66_RS05465 () | 1055779..1056213 | - | 435 | Protein_1080 | DUF551 domain-containing protein | - |
| LOF66_RS05470 () | 1056224..1056487 | - | 264 | WP_032176179.1 | hypothetical protein | - |
| LOF66_RS05475 () | 1056429..1056848 | - | 420 | WP_274480427.1 | hypothetical protein | - |
| LOF66_RS05480 () | 1056845..1057021 | - | 177 | WP_000753060.1 | hypothetical protein | - |
| LOF66_RS05485 () | 1057023..1057196 | - | 174 | WP_162869656.1 | hypothetical protein | - |
| LOF66_RS05490 () | 1057325..1057636 | - | 312 | WP_225520927.1 | hypothetical protein | - |
| LOF66_RS05495 () | 1057623..1057931 | - | 309 | WP_157713734.1 | hypothetical protein | - |
| LOF66_RS05500 () | 1057897..1058682 | - | 786 | WP_274480428.1 | DUF1627 domain-containing protein | - |
| LOF66_RS05505 () | 1058705..1059451 | - | 747 | WP_000788984.1 | ATP-binding protein | - |
| LOF66_RS05510 () | 1059458..1060246 | - | 789 | WP_001737256.1 | hypothetical protein | - |
| LOF66_RS05515 () | 1060324..1060746 | - | 423 | WP_000702025.1 | toxin YdaT family protein | - |
| LOF66_RS05520 () | 1060780..1060989 | - | 210 | WP_172820370.1 | helix-turn-helix transcriptional regulator | - |
| LOF66_RS05525 () | 1061087..1061476 | + | 390 | WP_053893447.1 | helix-turn-helix domain-containing protein | - |
| LOF66_RS05530 () | 1061787..1061939 | + | 153 | WP_000379566.1 | DUF1391 family protein | - |
| LOF66_RS05535 () | 1062361..1062582 | + | 222 | WP_000560223.1 | killing protein KilR | - |
| LOF66_RS05540 () | 1062582..1062752 | + | 171 | WP_001352098.1 | YdaE family protein | - |
| LOF66_RS05545 () | 1062827..1063102 | + | 276 | WP_000632297.1 | protein RacC | - |
| LOF66_RS05550 () | 1063204..1066350 | + | 3147 | WP_274480429.1 | exodeoxyribonuclease VIII | - |
| LOF66_RS05555 () | 1066362..1067414 | + | 1053 | WP_001004417.1 | RecT family recombinase | - |
| LOF66_RS05560 () | 1067478..1067672 | + | 195 | WP_274480430.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | - |
| LOF66_RS05565 () | 1067665..1067853 | + | 189 | WP_001356607.1 | DUF1187 family protein | - |
| - () | 1067671..1067849 | - | 179 | NuclAT_1 | - | - |
| - () | 1067671..1067849 | - | 179 | NuclAT_1 | - | - |
| - () | 1067671..1067849 | - | 179 | NuclAT_1 | - | - |
| - () | 1067671..1067849 | - | 179 | NuclAT_1 | - | - |
| LOF66_RS05570 () | 1067960..1068241 | + | 282 | WP_001311878.1 | excisionase | - |
| LOF66_RS05575 () | 1068207..1069283 | + | 1077 | WP_033544538.1 | hypothetical protein ; Integrase | Integrase |
| - | 1069414..1069648 | + | 235 | - | - | Antitoxin Detail |
| - | 1069415..1069518 | - | 104 | - | - | Toxin Detail |
| LOF66_RS05580 () | 1069676..1070017 | - | 342 | WP_000976476.1 | YebY family protein | - |
| LOF66_RS05585 () | 1070030..1070902 | - | 873 | WP_274480431.1 | copper homeostasis membrane protein CopD | - |
| LOF66_RS05590 () | 1070906..1071280 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LOF66_RS05595 () | 1071419..1071649 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LOF66_RS05600 () | 1071751..1072407 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LOF66_RS05605 () | 1072431..1073093 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LOF66_RS05610 () | 1073090..1075150 | - | 2061 | WP_000936927.1 | oligopeptidase B | - |
| LOF66_RS05615 () | 1075359..1076018 | - | 660 | WP_000024757.1 | tellurite resistance TerB family protein | - |
| LOF66_RS05620 () | 1076345..1076701 | - | 357 | WP_001295500.1 | protein YebF | - |
| LOF66_RS05625 () | 1076768..1077058 | - | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|