MGE detailed information
MGE type: Prophage MGE length: 88682 bp
Accession: NZ_CP087377 Location: 2310582..2399263 Organism: Escherichia coli strain RIVM_C019217 Replicon: chromosome
Accession: NZ_CP087377 Location: 2310582..2399263 Organism: Escherichia coli strain RIVM_C019217 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LN359_RS11170 () | 2307630..2308601 | - | 972 | WP_000564730.1 | tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB | - |
| LN359_RS11175 () | 2308598..2309341 | - | 744 | WP_000019591.1 | carboxy-S-adenosyl-L-methionine synthase CmoA | - |
| LN359_RS11180 () | 2309382..2309777 | - | 396 | WP_000252980.1 | MAPEG family protein | - |
| LN359_RS11185 () | 2309830..2310600 | - | 771 | WP_042196262.1 | DUF72 domain-containing protein | - |
| LN359_RS11190 () | 2310582..2311895 | - | 1314 | WP_000362005.1 | Tyrosine recombinase XerD ; Integrase | Integrase |
| LN359_RS11195 () | 2311951..2312187 | - | 237 | WP_000528718.1 | excisionase family protein | - |
| LN359_RS11200 () | 2312196..2312342 | - | 147 | WP_001030156.1 | hypothetical protein | - |
| LN359_RS11205 () | 2312346..2312588 | - | 243 | WP_000457723.1 | DUF4222 domain-containing protein | - |
| LN359_RS11210 () | 2312673..2313017 | - | 345 | WP_021519728.1 | hypothetical protein | - |
| LN359_RS11215 () | 2313014..2313181 | - | 168 | WP_021519727.1 | hypothetical protein | - |
| LN359_RS11220 () | 2313192..2313455 | - | 264 | WP_000224227.1 | hypothetical protein | - |
| LN359_RS11225 () | 2313742..2313867 | - | 126 | Protein_2200 | hypothetical protein | - |
| LN359_RS11230 () | 2313869..2314684 | - | 816 | WP_021519725.1 | ead/Ea22-like family protein | - |
| LN359_RS11235 () | 2314671..2314985 | - | 315 | WP_021519724.1 | hypothetical protein | - |
| LN359_RS11240 () | 2314939..2315256 | - | 318 | WP_000179800.1 | DUF4752 family protein | - |
| LN359_RS11245 () | 2315505..2316086 | - | 582 | WP_001199104.1 | hypothetical protein | - |
| LN359_RS11250 () | 2316092..2316280 | - | 189 | WP_021556324.1 | hypothetical protein | - |
| LN359_RS11255 () | 2316475..2316681 | - | 207 | WP_000141093.1 | hypothetical protein | - |
| LN359_RS11260 () | 2316972..2317472 | - | 501 | WP_021556323.1 | helix-turn-helix domain-containing protein | - |
| LN359_RS11265 () | 2317576..2318232 | - | 657 | WP_000838344.1 | S24 family peptidase | - |
| LN359_RS11270 () | 2318344..2318571 | + | 228 | WP_000177358.1 | hypothetical protein | - |
| LN359_RS11275 () | 2318568..2319275 | + | 708 | WP_001551257.1 | Rha family transcriptional regulator | - |
| LN359_RS11280 () | 2319384..2320238 | + | 855 | WP_001551256.1 | Rha family phage regulatory protein | - |
| LN359_RS11285 () | 2320235..2320429 | + | 195 | WP_000626793.1 | hypothetical protein | - |
| LN359_RS11290 () | 2320426..2320650 | + | 225 | WP_000618007.1 | hypothetical protein | - |
| LN359_RS11295 () | 2320647..2320946 | + | 300 | WP_000995578.1 | hypothetical protein | - |
| LN359_RS11300 () | 2320943..2321929 | + | 987 | WP_032301910.1 | hypothetical protein | - |
| LN359_RS11305 () | 2321940..2322839 | + | 900 | WP_000988266.1 | ATP-binding protein | - |
| LN359_RS11310 () | 2322836..2324236 | + | 1401 | WP_000203849.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| LN359_RS11315 () | 2324233..2324490 | + | 258 | WP_001065354.1 | hypothetical protein | - |
| LN359_RS11320 () | 2324542..2325531 | + | 990 | WP_032283452.1 | DUF968 domain-containing protein | - |
| LN359_RS11325 () | 2325549..2325929 | + | 381 | WP_001204806.1 | antiterminator Q family protein | - |
| LN359_RS11330 () | 2326145..2326342 | + | 198 | WP_000917767.1 | hypothetical protein | - |
| LN359_RS11335 () | 2326494..2327543 | + | 1050 | WP_000024332.1 | site-specific DNA-methyltransferase | - |
| LN359_RS11355 () | 2327948..2328097 | - | 150 | Protein_2223 | hypothetical protein | - |
| LN359_RS11360 () | 2328285..2328500 | + | 216 | WP_000839574.1 | class II holin family protein | - |
| LN359_RS11365 () | 2328505..2328855 | + | 351 | WP_192514396.1 | YdfR family protein | - |
| LN359_RS11370 () | 2328919..2329452 | + | 534 | WP_000992100.1 | lysozyme | - |
| LN359_RS11375 () | 2329669..2329854 | + | 186 | WP_001228685.1 | Rz1 family lipoprotein | - |
| LN359_RS11380 () | 2330072..2330338 | + | 267 | WP_001100260.1 | hypothetical protein | - |
| LN359_RS11385 () | 2330344..2330883 | - | 540 | WP_000351660.1 | YfbU family protein | - |
| LN359_RS11390 () | 2331022..2331372 | + | 351 | WP_001514288.1 | HNH endonuclease | - |
| LN359_RS11395 () | 2331520..2332002 | + | 483 | WP_001330091.1 | phage terminase small subunit P27 family | - |
| LN359_RS11400 () | 2332002..2333759 | + | 1758 | WP_001140907.1 | terminase large subunit | - |
| LN359_RS11405 () | 2333756..2333917 | + | 162 | WP_000811487.1 | hypothetical protein | - |
| LN359_RS11410 () | 2333907..2335133 | + | 1227 | WP_000923132.1 | phage portal protein | - |
| LN359_RS11415 () | 2335126..2335725 | + | 600 | WP_000999828.1 | HK97 family phage prohead protease | - |
| LN359_RS11420 () | 2335740..2336957 | + | 1218 | WP_000766109.1 | phage major capsid protein | - |
| LN359_RS11425 () | 2337034..2337351 | + | 318 | WP_000719066.1 | head-tail connector protein | - |
| LN359_RS11430 () | 2337360..2337698 | + | 339 | WP_001147816.1 | phage head closure protein | - |
| LN359_RS11435 () | 2337695..2338144 | + | 450 | WP_023910305.1 | HK97 gp10 family phage protein | - |
| LN359_RS11440 () | 2338141..2338485 | + | 345 | WP_001206698.1 | DUF3168 domain-containing protein | - |
| LN359_RS11445 () | 2338545..2339249 | + | 705 | WP_000097528.1 | immunoglobulin domain-containing protein | - |
| LN359_RS11450 () | 2339264..2339635 | + | 372 | WP_000164661.1 | phage tail assembly chaperone | - |
| LN359_RS11455 () | 2339647..2339937 | + | 291 | WP_001211636.1 | DUF4035 domain-containing protein | - |
| LN359_RS11460 () | 2339984..2343223 | + | 3240 | WP_000224011.1 | phage tail tape measure protein | - |
| LN359_RS11465 () | 2343216..2343557 | + | 342 | WP_001115183.1 | phage tail protein | - |
| LN359_RS11470 () | 2343557..2344255 | + | 699 | WP_001152453.1 | phage minor tail protein L | - |
| LN359_RS11475 () | 2344260..2345003 | + | 744 | WP_000194743.1 | C40 family peptidase | - |
| LN359_RS11480 () | 2344901..2345548 | + | 648 | WP_021516997.1 | tail assembly protein | - |
| LN359_RS11485 () | 2345609..2349088 | + | 3480 | WP_192514397.1 | host specificity protein J | - |
| LN359_RS11490 () | 2349156..2349755 | + | 600 | WP_001228337.1 | hypothetical protein | VF |
| LN359_RS11495 () | 2349820..2351886 | + | 2067 | WP_202859796.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LN359_RS11500 () | 2351883..2352161 | + | 279 | WP_001204581.1 | hypothetical protein | - |
| LN359_RS11505 () | 2352171..2352464 | + | 294 | WP_001555069.1 | hypothetical protein | - |
| LN359_RS11510 () | 2352493..2352606 | + | 114 | Protein_2254 | tail fiber assembly protein | - |
| LN359_RS11515 () | 2352579..2352725 | + | 147 | WP_001420444.1 | hypothetical protein | - |
| LN359_RS11520 () | 2352722..2352970 | - | 249 | WP_001217553.1 | DinI-like family protein | - |
| LN359_RS11525 () | 2353233..2353328 | - | 96 | Protein_2257 | hypothetical protein | - |
| LN359_RS11530 () | 2353325..2353891 | - | 567 | WP_001551241.1 | hydrolase | - |
| LN359_RS11535 () | 2354201..2355973 | + | 1773 | WP_001551240.1 | aspartate--tRNA ligase | - |
| LN359_RS11540 () | 2356091..2356543 | + | 453 | WP_001308712.1 | dihydroneopterin triphosphate diphosphatase | - |
| LN359_RS11545 () | 2356572..2357312 | + | 741 | WP_000907234.1 | transcriptional regulatory protein YebC | VF |
| LN359_RS11550 () | 2357347..2357868 | + | 522 | WP_001551239.1 | crossover junction endodeoxyribonuclease RuvC | - |
| LN359_RS11555 () | 2357870..2358472 | - | 603 | WP_001024929.1 | YebB family permuted papain-like enzyme | - |
| LN359_RS11560 () | 2358543..2358608 | + | 66 | WP_010723105.1 | stress response small protein YobI | - |
| LN359_RS11565 () | 2358747..2359358 | + | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| LN359_RS11570 () | 2359367..2360377 | + | 1011 | WP_000568522.1 | Holliday junction branch migration DNA helicase RuvB | - |
| LN359_RS11575 () | 2360527..2361312 | - | 786 | WP_000571479.1 | hypothetical protein | VF |
| LN359_RS11580 () | 2361309..2362064 | - | 756 | WP_000202996.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LN359_RS11585 () | 2362143..2363075 | + | 933 | WP_011076428.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
| LN359_RS11590 () | 2363091..2364413 | + | 1323 | WP_001184045.1 | murein DD-endopeptidase MepM | - |
| LN359_RS11595 () | 2364533..2365504 | + | 972 | WP_001551238.1 | Lipid A biosynthesis myristoyltransferase | VF |
| LN359_RS11600 () | 2365636..2367078 | - | 1443 | WP_000091148.1 | pyruvate kinase | - |
| LN359_RS11605 () | 2367206..2368075 | - | 870 | WP_001056694.1 | DNA-binding transcriptional regulator HexR | - |
| LN359_RS11610 () | 2368413..2369888 | + | 1476 | WP_000301727.1 | glucose-6-phosphate dehydrogenase | - |
| LN359_RS11615 () | 2370123..2371934 | + | 1812 | WP_001069467.1 | phosphogluconate dehydratase | - |
| LN359_RS11620 () | 2371971..2372612 | + | 642 | WP_000800512.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| LN359_RS11625 () | 2372667..2373845 | - | 1179 | WP_001551236.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LN359_RS11630 () | 2373979..2374269 | + | 291 | WP_000257738.1 | DNA damage-inducible protein YebG | - |
| LN359_RS11635 () | 2374336..2374692 | + | 357 | WP_001295500.1 | protein YebF | - |
| LN359_RS11640 () | 2375019..2375678 | + | 660 | WP_000024733.1 | tellurite resistance TerB family protein | - |
| LN359_RS11645 () | 2375842..2377011 | - | 1170 | WP_001551234.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LN359_RS11650 () | 2377068..2377493 | + | 426 | WP_000064873.1 | IS200-IS605 family transposase ISEc46 | Transposase |
| LN359_RS11655 () | 2377650..2379710 | + | 2061 | WP_001551233.1 | oligopeptidase B | - |
| LN359_RS11660 () | 2379707..2380369 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| LN359_RS11665 () | 2380393..2381049 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein YobB | - |
| LN359_RS11670 () | 2381151..2381381 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| LN359_RS11675 () | 2381520..2381894 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| LN359_RS11680 () | 2381898..2382770 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| LN359_RS11685 () | 2382783..2383124 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2383152..2383423 | - | 272 | - | - | Antitoxin Detail |
| - | 2383282..2383385 | + | 104 | - | - | Toxin Detail |
| LN359_RS11690 () | 2383520..2384176 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| LN359_RS11695 () | 2384177..2384368 | - | 192 | WP_001296140.1 | YebW family protein | - |
| LN359_RS11700 () | 2384473..2384709 | - | 237 | WP_001295499.1 | YebV family protein | - |
| LN359_RS11705 () | 2384827..2386266 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LN359_RS11710 () | 2386346..2388979 | - | 2634 | WP_001306757.1 | hypothetical protein | VF |
| LN359_RS11715 () | 2388948..2390231 | - | 1284 | WP_001316436.1 | membrane integrity lipid transport subunit YebS | - |
| LN359_RS11720 () | 2390361..2390858 | + | 498 | WP_001043876.1 | L-methionine (R)-S-oxide reductase | - |
| LN359_RS11725 () | 2390955..2391653 | + | 699 | WP_000431370.1 | RNA chaperone ProQ | - |
| LN359_RS11730 () | 2391673..2393721 | + | 2049 | WP_001055785.1 | carboxy terminal-processing peptidase | - |
| LN359_RS11735 () | 2393913..2394794 | + | 882 | WP_000984517.1 | protease HtpX | - |
| LN359_RS11740 () | 2394840..2396213 | - | 1374 | WP_001551227.1 | MFS transporter | - |
| LN359_RS11745 () | 2396390..2397181 | + | 792 | WP_001262179.1 | DNA-binding transcriptional regulator KdgR | - |
| LN359_RS11750 () | 2397325..2397564 | - | 240 | WP_001211011.1 | YobH family protein | - |
| LN359_RS11755 () | 2397723..2397866 | + | 144 | WP_000714550.1 | PhoP/PhoQ regulator MgrB | - |
| LN359_RS11760 () | 2397941..2398228 | + | 288 | WP_001006855.1 | YebO family protein | - |
| LN359_RS11765 () | 2398898..2399041 | + | 144 | WP_001295496.1 | DUF2627 domain-containing protein | - |
| LN359_RS11770 () | 2399054..2399263 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| LN359_RS11775 () | 2399429..2400238 | + | 810 | WP_000010109.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| LN359_RS11780 () | 2400235..2400801 | - | 567 | WP_001296134.1 | manganese efflux pump MntP | - |
| LN359_RS11785 () | 2401230..2401688 | - | 459 | WP_000156255.1 | DUF986 family protein | - |
| LN359_RS11790 () | 2401743..2402594 | - | 852 | WP_000228655.1 | PTS mannose transporter subunit IID | - |
| LN359_RS11795 () | 2402607..2403407 | - | 801 | WP_000406928.1 | PTS mannose transporter subunit IIC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|