MGE detailed information
MGE type: Genomic_island MGE length: 20683 bp
Accession: NZ_CP087287 Location: 952003..972685 Organism: Escherichia coli strain APEC 16-1068 Replicon: chromosome
Accession: NZ_CP087287 Location: 952003..972685 Organism: Escherichia coli strain APEC 16-1068 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LO742_RS04545 (948115) | 948115..948540 | - | 426 | WP_000946068.1 | type VI secretion system baseplate subunit TssE | - |
| LO742_RS04550 (948545) | 948545..950029 | - | 1485 | WP_000111582.1 | type VI secretion system contractile sheath large subunit | - |
| LO742_RS04555 (950052) | 950052..950555 | - | 504 | WP_000041480.1 | type VI secretion system contractile sheath small subunit | - |
| LO742_RS04560 (951264) | 951264..951782 | + | 519 | WP_001142963.1 | Hcp family type VI secretion system effector | - |
| LO742_RS04565 (952003) | 952003..953985 | + | 1983 | WP_021524646.1 | hypothetical protein | VF |
| LO742_RS04570 (954092) | 954092..955138 | + | 1047 | WP_000571853.1 | DUF2169 domain-containing protein | - |
| LO742_RS04575 (955131) | 955131..956570 | + | 1440 | WP_000528853.1 | DUF4150 domain-containing protein | - |
| LO742_RS04580 (956545) | 956545..956835 | + | 291 | WP_000513317.1 | hypothetical protein | - |
| LO742_RS04585 (957093) | 957093..957857 | + | 765 | Protein_889 | ISAs1 family transposase ISEc1 | Transposase |
| LO742_RS04590 (958086) | 958086..958589 | + | 504 | WP_021555008.1 | hypothetical protein | - |
| LO742_RS04595 (958684) | 958684..959172 | + | 489 | WP_001298174.1 | integrating conjugative element protein | - |
| LO742_RS04600 (959198) | 959198..959392 | + | 195 | Protein_892 | ISAs1 family transposase | - |
| LO742_RS04605 (959443) | 959443..960213 | - | 771 | WP_001118042.1 | 2-oxoglutaramate amidase | - |
| LO742_RS04610 (960394) | 960394..960840 | + | 447 | WP_001308392.1 | Ivy family C-type lysozyme inhibitor | - |
| LO742_RS04615 (960883) | 960883..963327 | - | 2445 | WP_000973137.1 | hypothetical protein | VF |
| LO742_RS04620 (963567) | 963567..964145 | + | 579 | WP_000284050.1 | hypothetical protein | VF |
| LO742_RS04625 (964350) | 964350..965117 | + | 768 | WP_001331866.1 | class II glutamine amidotransferase | - |
| LO742_RS04630 (965088) | 965088..965828 | - | 741 | WP_001225679.1 | peptidoglycan meso-diaminopimelic acid protein amidase | - |
| LO742_RS04635 (966140) | 966140..966889 | + | 750 | WP_000093934.1 | hypothetical protein | VF |
| LO742_RS04640 (967065) | 967065..967562 | + | 498 | WP_000006241.1 | REP-associated tyrosine transposase RayT | - |
| LO742_RS04645 (967645) | 967645..967803 | - | 159 | WP_014639450.1 | hypothetical protein | - |
| LO742_RS04650 (967882) | 967882..969594 | - | 1713 | Protein_902 | hypothetical protein | VF |
| LO742_RS04655 (969566) | 969566..970351 | + | 786 | WP_000207544.1 | hypothetical protein | VF |
| LO742_RS04660 (970422) | 970422..971477 | + | 1056 | WP_001226168.1 | DNA polymerase IV | - |
| LO742_RS04665 (971529) | 971529..971822 | + | 294 | WP_000554758.1 | type I toxin-antitoxin system antitoxin YafN | Antitoxin Detail |
| LO742_RS04670 (971825) | 971825..972223 | + | 399 | WP_001263500.1 | type II toxin-antitoxin system mRNA interferase toxin YafO | Toxin Detail |
| LO742_RS04675 (972233) | 972233..972685 | + | 453 | WP_001059895.1 | GNAT family N-acetyltransferase | - |
| LO742_RS04680 (972875) | 972875..974014 | + | 1140 | WP_000521577.1 | RNA ligase RtcB family protein | - |
| LO742_RS04685 (974011) | 974011..974625 | + | 615 | WP_000602123.1 | peptide chain release factor H | - |
| LO742_RS04690 (974682) | 974682..976139 | - | 1458 | WP_001292999.1 | cytosol nonspecific dipeptidase | - |
| LO742_RS04695 (976400) | 976400..976858 | + | 459 | WP_001291988.1 | xanthine phosphoribosyltransferase | - |
| - (977454) | 977454..977534 | + | 81 | NuclAT_4 | - | - |
| - (977454) | 977454..977534 | + | 81 | NuclAT_4 | - | - |
| - (977454) | 977454..977534 | + | 81 | NuclAT_4 | - | - |
| - (977454) | 977454..977534 | + | 81 | NuclAT_4 | - | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|