MGE detailed information
MGE type: Prophage MGE length: 42037 bp
Accession: NZ_CP087277 Location: 1607736..1649772 Organism: Ralstonia solanacearum strain FJ1003 Replicon: chromosome
Accession: NZ_CP087277 Location: 1607736..1649772 Organism: Ralstonia solanacearum strain FJ1003 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOH50_RS07475 | 1603404..1604057 | - | 654 | WP_003267806.1 | ATP-dependent Clp endopeptidase proteolytic subunit ClpP | - |
| LOH50_RS07480 | 1604087..1605436 | - | 1350 | WP_011001651.1 | trigger factor | - |
| LOH50_RS07485 | 1605691..1607664 | - | 1974 | WP_071623776.1 | bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC | - |
| LOH50_RS07490 | 1607736..1607930 | - | 195 | WP_011001649.1 | hypothetical protein | - |
| LOH50_RS07495 | 1608371..1608556 | + | 186 | WP_082240000.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| LOH50_RS07500 | 1608626..1609027 | + | 402 | WP_028853163.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| LOH50_RS07505 | 1609279..1610319 | + | 1041 | WP_167801031.1 | LysM domain-containing protein | - |
| LOH50_RS07510 | 1610803..1611681 | - | 879 | WP_167801032.1 | hypothetical protein | - |
| LOH50_RS07515 | 1611694..1612272 | - | 579 | WP_162904219.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| LOH50_RS07520 | 1612815..1613174 | - | 360 | WP_118891131.1 | hypothetical protein | - |
| LOH50_RS07525 | 1613171..1613440 | - | 270 | WP_118891130.1 | hypothetical protein | - |
| LOH50_RS07530 | 1613446..1613754 | - | 309 | WP_071508341.1 | hypothetical protein | - |
| LOH50_RS07535 | 1613755..1614246 | - | 492 | WP_071508340.1 | glycoside hydrolase family protein | - |
| LOH50_RS07540 | 1614370..1614855 | - | 486 | WP_118891129.1 | DUF4376 domain-containing protein | - |
| LOH50_RS07545 | 1614859..1616058 | - | 1200 | WP_118891128.1 | hypothetical protein | - |
| LOH50_RS07550 | 1616055..1616651 | - | 597 | WP_069079006.1 | DUF2313 domain-containing protein | - |
| LOH50_RS07555 | 1616642..1617694 | - | 1053 | WP_167801033.1 | baseplate J/gp47 family protein | - |
| LOH50_RS07560 | 1617696..1618154 | - | 459 | WP_167801034.1 | phage GP46 family protein | - |
| LOH50_RS07565 | 1618154..1618726 | - | 573 | WP_167801035.1 | phage baseplate assembly protein V | - |
| LOH50_RS07570 | 1618726..1619910 | - | 1185 | WP_167801036.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| LOH50_RS07575 | 1619907..1621085 | - | 1179 | WP_167801037.1 | DNA circularization N-terminal domain-containing protein | - |
| LOH50_RS07580 | 1621351..1621590 | + | 240 | WP_081263866.1 | hypothetical protein | - |
| LOH50_RS07585 | 1621714..1623435 | - | 1722 | WP_167801038.1 | hypothetical protein | - |
| LOH50_RS07590 | 1623515..1623844 | - | 330 | WP_064048057.1 | phage tail assembly protein | - |
| LOH50_RS07595 | 1623844..1624206 | - | 363 | WP_020371381.1 | phage tail tube protein | - |
| LOH50_RS07600 | 1624255..1625736 | - | 1482 | WP_167801039.1 | phage tail sheath C-terminal domain-containing protein | - |
| LOH50_RS07605 | 1625736..1625966 | - | 231 | WP_064048055.1 | DUF2635 domain-containing protein | - |
| LOH50_RS07610 | 1625987..1626568 | - | 582 | WP_167801040.1 | hypothetical protein | - |
| LOH50_RS07615 | 1626565..1626873 | - | 309 | WP_064048053.1 | hypothetical protein | - |
| LOH50_RS07620 | 1626873..1627205 | - | 333 | WP_167801041.1 | DUF2190 family protein | - |
| LOH50_RS07625 | 1627289..1629361 | - | 2073 | WP_167801042.1 | Mu-like prophage major head subunit gpT family protein | - |
| LOH50_RS07630 | 1629436..1630881 | - | 1446 | WP_167801043.1 | phage portal protein | - |
| LOH50_RS07635 | 1630883..1631104 | - | 222 | WP_167801030.1 | hypothetical protein | - |
| LOH50_RS07640 | 1631117..1633075 | - | 1959 | WP_167801044.1 | phage terminase large subunit family protein | - |
| LOH50_RS07645 | 1633098..1633604 | - | 507 | WP_069079018.1 | terminase small subunit | - |
| LOH50_RS07650 | 1633787..1634431 | - | 645 | WP_167801079.1 | hypothetical protein | - |
| LOH50_RS07655 | 1634478..1634885 | - | 408 | WP_167801078.1 | hypothetical protein | - |
| LOH50_RS07660 | 1635956..1638376 | - | 2421 | WP_167801077.1 | VapE family protein | - |
| LOH50_RS07665 | 1638373..1638657 | - | 285 | WP_167801076.1 | hypothetical protein | - |
| LOH50_RS07670 | 1638654..1638878 | - | 225 | WP_167801075.1 | hypothetical protein | - |
| LOH50_RS07675 | 1638871..1639380 | - | 510 | WP_167801074.1 | hypothetical protein | - |
| LOH50_RS07680 | 1639553..1639837 | - | 285 | WP_167801073.1 | YdaS family helix-turn-helix protein | - |
| LOH50_RS07685 | 1639942..1640637 | + | 696 | WP_167801072.1 | S24 family peptidase | - |
| LOH50_RS07690 | 1640641..1640949 | + | 309 | WP_167801071.1 | hypothetical protein | - |
| LOH50_RS07695 | 1641032..1641241 | + | 210 | WP_064048040.1 | hypothetical protein | - |
| LOH50_RS07700 | 1641557..1641712 | + | 156 | WP_167801069.1 | hypothetical protein | - |
| LOH50_RS07705 | 1641775..1642179 | - | 405 | WP_167801066.1 | hypothetical protein | - |
| LOH50_RS26185 | 1642255..1642383 | + | 129 | WP_257785627.1 | hypothetical protein | - |
| LOH50_RS07710 | 1642383..1642784 | + | 402 | WP_049832807.1 | hypothetical protein | - |
| LOH50_RS07715 | 1642791..1642955 | + | 165 | WP_155738973.1 | hypothetical protein | - |
| LOH50_RS07720 | 1642957..1643163 | + | 207 | WP_069079029.1 | hypothetical protein | - |
| LOH50_RS07725 | 1643213..1643557 | + | 345 | WP_069079320.1 | hypothetical protein | - |
| LOH50_RS07730 | 1643590..1644441 | + | 852 | WP_069079030.1 | DUF2303 family protein | - |
| LOH50_RS07735 | 1644494..1645048 | + | 555 | WP_069079031.1 | deoxynucleotide monophosphate kinase | - |
| LOH50_RS07740 | 1645045..1645521 | + | 477 | WP_167801068.1 | hypothetical protein | - |
| LOH50_RS07745 | 1645518..1646045 | + | 528 | WP_064047750.1 | hypothetical protein | - |
| LOH50_RS07750 | 1646039..1646281 | + | 243 | WP_069079033.1 | hypothetical protein | - |
| LOH50_RS07755 | 1646278..1648374 | + | 2097 | WP_230076474.1 | DNA cytosine methyltransferase | - |
| LOH50_RS07760 | 1648546..1649772 | + | 1227 | WP_167801067.1 | Putative defective protein IntQ ; Integrase | Integrase |
| LOH50_RS07770 | 1650012..1653131 | - | 3120 | WP_019718736.1 | efflux RND transporter permease subunit | - |
| LOH50_RS07775 | 1653198..1654406 | - | 1209 | WP_064477835.1 | efflux RND transporter periplasmic adaptor subunit | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|