MGE detailed information
MGE type: Genomic_island MGE length: 37822 bp
Accession: NZ_CP087226 Location: 983656..1021477 Organism: Dickeya fangzhongdai strain B16 Replicon: chromosome
Accession: NZ_CP087226 Location: 983656..1021477 Organism: Dickeya fangzhongdai strain B16 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QR68_RS04380 (QR68_04380) | 978848..979255 | + | 408 | WP_038918013.1 | hypothetical protein | - |
| QR68_RS04385 (QR68_04385) | 979458..980744 | + | 1287 | WP_038918014.1 | ABC transporter permease | - |
| QR68_RS04390 (QR68_04390) | 980737..982203 | + | 1467 | WP_038918015.1 | TolC family protein | - |
| QR68_RS04395 (QR68_04395) | 982196..983482 | + | 1287 | WP_038918016.1 | HlyD family efflux transporter periplasmic adaptor subunit | - |
| QR68_RS04400 (QR68_04400) | 983656..984183 | - | 528 | WP_038918018.1 | 50S ribosome-binding GTPase | - |
| QR68_RS04405 (QR68_04405) | 984306..985358 | - | 1053 | WP_049842532.1 | hypothetical protein | - |
| QR68_RS04410 (QR68_04410) | 985426..986538 | - | 1113 | WP_038918019.1 | HBL/NHE enterotoxin family protein | - |
| QR68_RS04415 (QR68_04415) | 986557..987633 | - | 1077 | WP_038918020.1 | hypothetical protein | - |
| QR68_RS04420 (QR68_04420) | 987635..988027 | - | 393 | WP_038918021.1 | hypothetical protein | - |
| QR68_RS04425 (QR68_04425) | 988047..988436 | - | 390 | WP_038918022.1 | hypothetical protein | - |
| QR68_RS04430 (QR68_04430) | 988912..989766 | + | 855 | WP_038918023.1 | hypothetical protein | - |
| QR68_RS04435 (QR68_04435) | 989776..989925 | + | 150 | WP_162942909.1 | hypothetical protein | - |
| QR68_RS04440 (QR68_04440) | 990100..990744 | - | 645 | WP_049842533.1 | hypothetical protein | - |
| QR68_RS04445 (QR68_04445) | 990819..991487 | - | 669 | WP_071605159.1 | DUF1906 domain-containing protein | - |
| QR68_RS04450 (QR68_04450) | 991733..992869 | - | 1137 | WP_038918025.1 | linear amide C-N hydrolase | - |
| QR68_RS04455 (QR68_04455) | 993528..994631 | - | 1104 | WP_231348844.1 | hypothetical protein | - |
| QR68_RS04460 (QR68_04460) | 994849..995149 | - | 301 | Protein_866 | IS3 family transposase ISEhe3 | Transposase |
| QR68_RS04465 (QR68_04465) | 995252..996661 | - | 1410 | WP_038918027.1 | MATE family efflux transporter | - |
| QR68_RS04470 (QR68_04470) | 996694..998175 | - | 1482 | WP_038918028.1 | hypothetical protein | VF |
| QR68_RS04475 (QR68_04475) | 998300..998917 | + | 618 | WP_038920824.1 | hypothetical protein | VF |
| QR68_RS04480 (QR68_04480) | 999012..1000124 | + | 1113 | WP_038918029.1 | efflux RND transporter periplasmic adaptor subunit | - |
| QR68_RS04485 (QR68_04485) | 1000121..1003183 | + | 3063 | WP_038918030.1 | efflux RND transporter permease subunit | - |
| QR68_RS04490 (QR68_04490) | 1003229..1004035 | + | 807 | WP_038918031.1 | hypothetical protein | VF |
| QR68_RS04495 (QR68_04495) | 1004274..1004641 | + | 368 | Protein_873 | GNAT family N-acetyltransferase | - |
| QR68_RS04500 (QR68_04500) | 1004879..1006021 | + | 1143 | WP_038918034.1 | Fic family protein | - |
| QR68_RS04505 (QR68_04505) | 1006044..1006154 | - | 111 | Protein_875 | IS3 family transposase IS1400 | Transposase |
| QR68_RS04510 (QR68_04510) | 1006244..1006486 | + | 243 | WP_071605161.1 | helix-turn-helix transcriptional regulator | - |
| QR68_RS04515 (QR68_04515) | 1006812..1007036 | + | 225 | WP_038918035.1 | DUF1778 domain-containing protein | - |
| QR68_RS04520 (QR68_04520) | 1007154..1008278 | + | 1125 | WP_038918036.1 | hypothetical protein ; Integrase | Integrase |
| QR68_RS04525 (QR68_04525) | 1008530..1010425 | + | 1896 | WP_038918037.1 | N-6 DNA methylase | - |
| QR68_RS04530 (QR68_04530) | 1010412..1011374 | + | 963 | WP_071605162.1 | restriction endonuclease subunit S | - |
| QR68_RS04535 (QR68_04535) | 1012078..1012647 | - | 570 | WP_038918038.1 | Tn3 family transposase TnpR_ISPa38 | Transposase |
| QR68_RS04540 (QR68_04540) | 1012613..1012825 | - | 213 | WP_023638430.1 | hypothetical protein | - |
| QR68_RS04545 (QR68_04545) | 1012903..1015524 | + | 2622 | WP_049842535.1 | N-6 DNA methylase | - |
| QR68_RS04550 (QR68_04550) | 1015517..1017526 | + | 2010 | WP_193745938.1 | helicase-related protein | - |
| QR68_RS04555 (QR68_04555) | 1017528..1018793 | + | 1266 | WP_038918041.1 | GIY-YIG nuclease family protein | - |
| QR68_RS04560 (QR68_04560) | 1018904..1019209 | - | 306 | WP_038918043.1 | type II toxin-antitoxin system toxin CcdB | Toxin Detail |
| QR68_RS04565 (QR68_04565) | 1019212..1019430 | - | 219 | WP_038918044.1 | type II toxin-antitoxin system antitoxin CcdA | Antitoxin Detail |
| QR68_RS04570 (QR68_04570) | 1019489..1020232 | - | 744 | WP_038918045.1 | MobC family replication-relaxation protein | - |
| QR68_RS04575 (QR68_04575) | 1021136..1021477 | - | 342 | WP_038918046.1 | hypothetical protein | - |
| QR68_RS04580 (QR68_04580) | 1021934..1023196 | - | 1263 | WP_038918047.1 | integrase arm-type DNA-binding domain-containing protein | - |
| QR68_RS04590 (QR68_04590) | 1024098..1026251 | + | 2154 | WP_038918048.1 | ornithine decarboxylase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|