MGE detailed information
MGE type: Integrative_Conjugative_Elements MGE length: 50270 bp
Accession: NZ_CP087183 Location: 4020562..4070831 Organism: Pseudomonas putida strain B21-029 Replicon: chromosome
Accession: NZ_CP087183 Location: 4020562..4070831 Organism: Pseudomonas putida strain B21-029 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOY24_RS17780 (LOY24_17760) | 4016086..4017249 | + | 1164 | WP_258652968.1 | AAA family ATPase | - |
| LOY24_RS17785 (LOY24_17765) | 4017385..4018059 | + | 675 | Protein_3489 | polysaccharide lyase family 7 protein | - |
| LOY24_RS17790 (LOY24_17770) | 4018696..4018890 | + | 195 | WP_258652970.1 | hypothetical protein | - |
| LOY24_RS17795 (LOY24_17775) | 4019205..4019381 | + | 177 | WP_258652972.1 | hypothetical protein | - |
| LOY24_RS17800 (LOY24_17780) | 4020361..4020585 | + | 225 | Protein_3492 | hypothetical protein | - |
| LOY24_RS17805 (LOY24_17785) | 4020818..4021177 | - | 360 | WP_258652974.1 | S24 family peptidase | - |
| LOY24_RS17810 (LOY24_17790) | 4021253..4021477 | - | 225 | WP_258652976.1 | hypothetical protein | - |
| LOY24_RS17815 (LOY24_17795) | 4021662..4022606 | + | 945 | WP_258652977.1 | hypothetical protein | - |
| LOY24_RS17820 (LOY24_17800) | 4022694..4023215 | - | 522 | WP_258657709.1 | lysis system i-spanin subunit Rz | - |
| LOY24_RS17825 (LOY24_17805) | 4023251..4023688 | - | 438 | WP_258652979.1 | structural protein P5 | - |
| LOY24_RS17830 (LOY24_17810) | 4024115..4024594 | - | 480 | WP_258652981.1 | DUF1566 domain-containing protein | - |
| LOY24_RS17835 (LOY24_17815) | 4024676..4026967 | - | 2292 | WP_258652985.1 | hypothetical protein | - |
| LOY24_RS17840 (LOY24_17820) | 4027008..4030058 | - | 3051 | WP_258652992.1 | host specificity factor TipJ family phage tail protein | - |
| LOY24_RS17845 (LOY24_17825) | 4030027..4030431 | - | 405 | WP_258652995.1 | hypothetical protein | - |
| LOY24_RS17850 (LOY24_17830) | 4030434..4030913 | - | 480 | WP_060709479.1 | DUF1833 family protein | - |
| LOY24_RS17855 (LOY24_17835) | 4030910..4031380 | - | 471 | WP_258652999.1 | transposase | - |
| LOY24_RS17860 (LOY24_17840) | 4031393..4034989 | - | 3597 | WP_258653002.1 | phage tail length tape measure family protein | - |
| LOY24_RS17865 (LOY24_17845) | 4035032..4035340 | - | 309 | WP_258653004.1 | hypothetical protein | - |
| LOY24_RS17870 (LOY24_17850) | 4035397..4035555 | - | 159 | WP_258653005.1 | hypothetical protein | - |
| LOY24_RS17875 (LOY24_17855) | 4035566..4035775 | - | 210 | WP_258653006.1 | hypothetical protein | - |
| LOY24_RS17880 (LOY24_17860) | 4035823..4036296 | - | 474 | WP_258653009.1 | hypothetical protein | - |
| LOY24_RS17885 (LOY24_17865) | 4036367..4037527 | - | 1161 | WP_258653012.1 | phage tail tube protein | - |
| LOY24_RS17890 (LOY24_17870) | 4037595..4038008 | - | 414 | WP_258653015.1 | DUF4128 domain-containing protein | - |
| LOY24_RS17895 (LOY24_17875) | 4038005..4038424 | - | 420 | WP_258653017.1 | HK97 gp10 family phage protein | - |
| LOY24_RS17900 (LOY24_17880) | 4038424..4038807 | - | 384 | WP_258653019.1 | hypothetical protein | - |
| LOY24_RS17905 (LOY24_17885) | 4038809..4039810 | - | 1002 | WP_258653021.1 | phage head morphogenesis protein | - |
| LOY24_RS17910 (LOY24_17890) | 4039807..4040331 | - | 525 | WP_258653022.1 | hypothetical protein | - |
| LOY24_RS17915 (LOY24_17895) | 4040375..4040755 | - | 381 | WP_258653024.1 | hypothetical protein | - |
| LOY24_RS17920 (LOY24_17900) | 4040768..4041727 | - | 960 | WP_258653026.1 | DUF2184 domain-containing protein | - |
| LOY24_RS17925 (LOY24_17905) | 4041746..4042231 | - | 486 | WP_258653028.1 | hypothetical protein | - |
| LOY24_RS17930 (LOY24_17910) | 4042244..4043377 | - | 1134 | WP_258653031.1 | DUF2213 domain-containing protein | - |
| LOY24_RS17935 (LOY24_17915) | 4043386..4045182 | - | 1797 | WP_258653033.1 | DUF1073 domain-containing protein | - |
| LOY24_RS17940 (LOY24_17920) | 4045182..4046468 | - | 1287 | WP_258653035.1 | terminase large subunit | - |
| LOY24_RS17945 (LOY24_17925) | 4046455..4046916 | - | 462 | WP_258653037.1 | DUF2280 domain-containing protein | - |
| LOY24_RS17950 (LOY24_17930) | 4046948..4047556 | - | 609 | WP_258653039.1 | putative metallopeptidase | - |
| LOY24_RS17955 (LOY24_17935) | 4047604..4047921 | - | 318 | WP_258653047.1 | hypothetical protein | - |
| LOY24_RS17960 (LOY24_17940) | 4047921..4048292 | - | 372 | WP_095064330.1 | chemotaxis protein | - |
| LOY24_RS17965 (LOY24_17945) | 4048380..4048562 | + | 183 | WP_258653050.1 | type II toxin-antitoxin system HicA family toxin | Toxin Detail |
| LOY24_RS17970 (LOY24_17950) | 4048611..4049036 | + | 426 | WP_258653052.1 | type II toxin-antitoxin system HicB family antitoxin | Antitoxin Detail |
| LOY24_RS17975 (LOY24_17955) | 4049193..4049882 | - | 690 | WP_258653054.1 | hypothetical protein | - |
| LOY24_RS17980 (LOY24_17960) | 4049879..4050025 | - | 147 | WP_258653056.1 | hypothetical protein | - |
| LOY24_RS17985 (LOY24_17965) | 4050022..4050624 | - | 603 | WP_258653058.1 | recombination protein NinG | - |
| LOY24_RS17990 (LOY24_17970) | 4050890..4051288 | - | 399 | WP_258653060.1 | recombination protein NinB | - |
| LOY24_RS17995 (LOY24_17975) | 4051285..4051518 | - | 234 | WP_258653068.1 | hypothetical protein | - |
| LOY24_RS18000 (LOY24_17980) | 4051515..4051793 | - | 279 | WP_258653071.1 | hypothetical protein | - |
| LOY24_RS18005 (LOY24_17985) | 4051786..4052088 | - | 303 | WP_258653073.1 | hypothetical protein | - |
| LOY24_RS18010 (LOY24_17990) | 4052088..4052429 | - | 342 | WP_258653075.1 | hypothetical protein | - |
| LOY24_RS18015 (LOY24_17995) | 4052432..4053193 | - | 762 | WP_258653077.1 | replication protein P | - |
| LOY24_RS18020 (LOY24_18000) | 4053190..4053981 | - | 792 | WP_258653079.1 | helix-turn-helix domain-containing protein | - |
| LOY24_RS18025 (LOY24_18005) | 4053978..4054769 | - | 792 | WP_258653081.1 | Rha family transcriptional regulator | - |
| LOY24_RS18030 (LOY24_18010) | 4054899..4055108 | - | 210 | WP_258653085.1 | hypothetical protein | - |
| LOY24_RS18035 (LOY24_18015) | 4055129..4055335 | - | 207 | WP_102667618.1 | hypothetical protein | - |
| LOY24_RS18040 (LOY24_18020) | 4055596..4055784 | - | 189 | WP_004573832.1 | hypothetical protein | - |
| LOY24_RS18045 (LOY24_18025) | 4055817..4056065 | - | 249 | WP_258653090.1 | helix-turn-helix domain-containing protein | - |
| LOY24_RS18050 (LOY24_18030) | 4056161..4057003 | + | 843 | WP_258653092.1 | S24 family peptidase | - |
| LOY24_RS18055 (LOY24_18035) | 4057023..4057406 | + | 384 | WP_258653093.1 | hypothetical protein | - |
| LOY24_RS18060 (LOY24_18040) | 4057396..4058127 | + | 732 | WP_258653096.1 | hypothetical protein | - |
| LOY24_RS18065 (LOY24_18045) | 4058162..4058488 | - | 327 | WP_258653098.1 | DUF1654 domain-containing protein | - |
| LOY24_RS18070 (LOY24_18050) | 4058949..4059593 | + | 645 | WP_258653100.1 | hypothetical protein | - |
| LOY24_RS18075 (LOY24_18055) | 4060024..4060440 | + | 417 | WP_258653102.1 | hypothetical protein | - |
| LOY24_RS18080 (LOY24_18060) | 4060437..4060628 | + | 192 | WP_258653103.1 | hypothetical protein | - |
| LOY24_RS18085 (LOY24_18065) | 4060625..4060846 | + | 222 | WP_258653105.1 | hypothetical protein | - |
| LOY24_RS18090 (LOY24_18070) | 4061134..4062258 | + | 1125 | WP_258653107.1 | hypothetical protein | - |
| LOY24_RS18095 (LOY24_18075) | 4062266..4063024 | + | 759 | WP_258653109.1 | ERF family protein | - |
| LOY24_RS18100 (LOY24_18080) | 4063028..4063645 | + | 618 | WP_164524752.1 | YqaJ viral recombinase family protein | - |
| LOY24_RS18105 (LOY24_18085) | 4063654..4064184 | + | 531 | WP_258653111.1 | single-stranded DNA-binding protein | - |
| LOY24_RS18110 (LOY24_18090) | 4064427..4064786 | + | 360 | WP_258653113.1 | hypothetical protein | - |
| LOY24_RS18115 (LOY24_18095) | 4064867..4065124 | - | 258 | WP_258653115.1 | hypothetical protein | - |
| LOY24_RS18120 (LOY24_18100) | 4065180..4066103 | + | 924 | WP_258653117.1 | DNA cytosine methyltransferase | - |
| LOY24_RS18125 (LOY24_18105) | 4066110..4066391 | - | 282 | WP_258653123.1 | hypothetical protein | - |
| LOY24_RS18130 (LOY24_18110) | 4066465..4067163 | + | 699 | WP_258653125.1 | hypothetical protein | - |
| LOY24_RS18135 (LOY24_18115) | 4067240..4067533 | + | 294 | WP_258653127.1 | hypothetical protein | - |
| LOY24_RS18140 (LOY24_18120) | 4067530..4067781 | + | 252 | WP_258653128.1 | hypothetical protein | - |
| LOY24_RS18145 (LOY24_18125) | 4067778..4068335 | + | 558 | WP_258653129.1 | hypothetical protein | - |
| LOY24_RS18150 (LOY24_18130) | 4068332..4068520 | + | 189 | WP_258653130.1 | hypothetical protein | - |
| LOY24_RS18155 (LOY24_18135) | 4068578..4069000 | + | 423 | WP_258653131.1 | hypothetical protein | - |
| LOY24_RS18160 (LOY24_18140) | 4069039..4069215 | + | 177 | WP_258653132.1 | hypothetical protein | - |
| LOY24_RS18165 (LOY24_18145) | 4069236..4069634 | + | 399 | WP_258653133.1 | hypothetical protein | - |
| LOY24_RS18170 (LOY24_18150) | 4069520..4070701 | + | 1182 | WP_258653134.1 | hypothetical protein ; Integrase | Integrase |
| LOY24_RS18180 (LOY24_18160) | 4070970..4071326 | - | 357 | WP_003250681.1 | MerR family transcriptional regulator | - |
| LOY24_RS18185 (LOY24_18165) | 4071307..4071609 | - | 303 | WP_003250679.1 | integration host factor subunit alpha | - |
| LOY24_RS18190 (LOY24_18170) | 4071614..4074007 | - | 2394 | WP_258653135.1 | phenylalanine--tRNA ligase subunit beta | - |
| LOY24_RS18195 (LOY24_18175) | 4074039..4075055 | - | 1017 | WP_016487883.1 | phenylalanine--tRNA ligase subunit alpha | - |
| LOY24_RS18200 (LOY24_18180) | 4075165..4075521 | - | 357 | WP_009394046.1 | 50S ribosomal protein L20 | - |
| LOY24_RS18205 (LOY24_18185) | 4075549..4075743 | - | 195 | WP_003250667.1 | 50S ribosomal protein L35 | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|