MGE detailed information
MGE type: Conjugative plasmid MGE length: 61278 bp
Accession: NZ_CP087162 Location: 1..61278 Organism: Pseudomonas sp. CIP-10 Replicon: plasmid unnamed2
Accession: NZ_CP087162 Location: 1..61278 Organism: Pseudomonas sp. CIP-10 Replicon: plasmid unnamed2
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LMH93_RS29210 (LMH93_29210) | 1..558 | + | 558 | WP_051555726.1 | helix-turn-helix domain-containing protein | - |
| LMH93_RS29215 (LMH93_29215) | 587..877 | + | 291 | WP_051555725.1 | hypothetical protein | - |
| LMH93_RS29220 (LMH93_29220) | 870..1415 | + | 546 | WP_036986388.1 | hypothetical protein | - |
| LMH93_RS29225 (LMH93_29225) | 1555..2826 | + | 1272 | WP_028691925.1 | DUF1173 family protein | - |
| LMH93_RS29230 (LMH93_29230) | 2828..3577 | + | 750 | WP_226342966.1 | hypothetical protein | - |
| LMH93_RS29235 (LMH93_29235) | 3594..4877 | - | 1284 | WP_028691924.1 | Y-family DNA polymerase | - |
| LMH93_RS29240 (LMH93_29240) | 4867..5295 | - | 429 | WP_028691923.1 | translesion error-prone DNA polymerase V autoproteolytic subunit | - |
| LMH93_RS29245 (LMH93_29245) | 7364..7687 | - | 324 | WP_028692297.1 | hypothetical protein | - |
| LMH93_RS29250 (LMH93_29250) | 7982..8203 | - | 222 | WP_028692296.1 | hypothetical protein | - |
| LMH93_RS29255 (LMH93_29255) | 8223..8522 | - | 300 | WP_028692295.1 | putative addiction module antidote protein | Antitoxin Detail |
| LMH93_RS29260 (LMH93_29260) | 8519..8821 | - | 303 | WP_028692294.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LMH93_RS29265 (LMH93_29265) | 9024..9803 | + | 780 | WP_028692293.1 | DUF4942 domain-containing protein | - |
| LMH93_RS29270 (LMH93_29270) | 9956..10324 | + | 369 | WP_028692292.1 | hypothetical protein | - |
| LMH93_RS29275 (LMH93_29275) | 10324..10668 | + | 345 | WP_226342977.1 | theronine dehydrogenase | - |
| LMH93_RS29280 (LMH93_29280) | 11006..12097 | + | 1092 | WP_051555741.1 | hypothetical protein | - |
| LMH93_RS29285 (LMH93_29285) | 12243..12485 | + | 243 | WP_028692289.1 | hypothetical protein | - |
| LMH93_RS29290 (LMH93_29290) | 12537..14219 | + | 1683 | WP_028692288.1 | DNA cytosine methyltransferase | - |
| LMH93_RS29295 (LMH93_29295) | 14306..14527 | + | 222 | WP_028692287.1 | hypothetical protein | - |
| LMH93_RS29300 (LMH93_29300) | 14531..14971 | + | 441 | WP_028692286.1 | hypothetical protein | - |
| LMH93_RS29305 (LMH93_29305) | 14983..15246 | + | 264 | WP_134998160.1 | hypothetical protein | - |
| LMH93_RS29310 (LMH93_29310) | 15917..16312 | + | 396 | WP_051555729.1 | hypothetical protein | - |
| LMH93_RS29315 (LMH93_29315) | 16334..16894 | + | 561 | WP_226342989.1 | single-stranded DNA-binding protein | - |
| LMH93_RS29320 (LMH93_29320) | 17085..17912 | + | 828 | WP_028691957.1 | DUF932 domain-containing protein | - |
| LMH93_RS29325 (LMH93_29325) | 17971..18393 | + | 423 | WP_028691956.1 | hypothetical protein | - |
| LMH93_RS29330 (LMH93_29330) | 18417..18731 | + | 315 | WP_028691955.1 | TrfB-related DNA-binding protein | - |
| LMH93_RS29335 (LMH93_29335) | 18753..19772 | + | 1020 | WP_051555728.1 | hypothetical protein | - |
| LMH93_RS29340 (LMH93_29340) | 20279..20647 | - | 369 | WP_137188492.1 | hypothetical protein | - |
| LMH93_RS29345 (LMH93_29345) | 20830..20895 | + | 66 | Protein_27 | hypothetical protein | - |
| LMH93_RS29350 (LMH93_29350) | 21138..21410 | + | 273 | Protein_28 | EamA family transporter | - |
| LMH93_RS29355 (LMH93_29355) | 21442..22641 | - | 1200 | WP_000804064.1 | Tetracycline resistance protein, class C | ARG |
| LMH93_RS29360 (LMH93_29360) | 22747..23397 | + | 651 | WP_000164043.1 | tetracycline resistance transcriptional repressor TetR(A) | - |
| LMH93_RS29365 (LMH93_29365) | 23429..23671 | - | 243 | WP_000844627.1 | transposase | - |
| LMH93_RS29370 (LMH93_29370) | 23905..24471 | - | 567 | WP_003159185.1 | Tn3 family transposase ISPsy42 | Transposase |
| LMH93_RS29375 (LMH93_29375) | 24600..24848 | - | 249 | WP_012585400.1 | type II toxin-antitoxin system YafQ family toxin | - |
| LMH93_RS29380 (LMH93_29380) | 25108..26121 | - | 1014 | WP_000845048.1 | IS91 family transposase ISAzo26 | Transposase |
| LMH93_RS29385 (LMH93_29385) | 26413..26967 | + | 555 | WP_063840321.1 | Aminoglycoside N(6')-acetyltransferase type 1 | ARG |
| LMH93_RS29390 (LMH93_29390) | 27244..27900 | + | 657 | WP_000415714.1 | Pentapeptide repeat protein | ARG |
| LMH93_RS29395 (LMH93_29395) | 28064..28618 | + | 555 | WP_003159191.1 | aminoglycoside N-acetyltransferase AAC(6')-Ib4 | - |
| LMH93_RS29400 (LMH93_29400) | 28860..29660 | + | 801 | WP_000846390.1 | Beta-lactamase OXA-10 | ARG |
| LMH93_RS29405 (LMH93_29405) | 29677..30515 | + | 839 | Protein_39 | Streptomycin 3''-adenylyltransferase | ARG |
| LMH93_RS29410 (LMH93_29410) | 30543..31016 | + | 474 | WP_004201280.1 | Dihydrofolate reductase type 1 | ARG |
| LMH93_RS29415 (LMH93_29415) | 31237..31389 | + | 153 | Protein_41 | hypothetical protein | Relaxase |
| LMH93_RS29420 (LMH93_29420) | 31463..31528 | + | 66 | Protein_42 | hypothetical protein | Relaxase |
| LMH93_RS29425 (LMH93_29425) | 31646..32410 | + | 765 | WP_001389365.1 | IS6 family transposase IS6100 | Transposase |
| LMH93_RS29430 (LMH93_29430) | 32466..32816 | + | 351 | Protein_44 | DUF3883 domain-containing protein | - |
| LMH93_RS29435 (LMH93_29435) | 32931..33174 | + | 244 | Protein_45 | transposase | - |
| LMH93_RS29440 (LMH93_29440) | 33173..34351 | + | 1179 | Protein_46 | Tn3 family transposase TnpA_TnAs1 | Transposase |
| LMH93_RS29445 (LMH93_29445) | 34613..35410 | - | 798 | WP_028691952.1 | SprT-like domain-containing protein | - |
| LMH93_RS29450 (LMH93_29450) | 35541..35921 | - | 381 | WP_028691951.1 | hypothetical protein | - |
| LMH93_RS29455 (LMH93_29455) | 35925..36644 | - | 720 | WP_028691950.1 | StbB family protein | - |
| LMH93_RS29460 (LMH93_29460) | 36641..37096 | - | 456 | WP_028691949.1 | hypothetical protein | - |
| LMH93_RS29465 (LMH93_29465) | 37529..37912 | + | 384 | WP_028691948.1 | hypothetical protein | - |
| LMH93_RS29470 (LMH93_29470) | 37912..39462 | + | 1551 | WP_028691947.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LMH93_RS29475 (LMH93_29475) | 39474..42410 | + | 2937 | WP_028691946.1 | Multifunctional conjugation protein TraI | Relaxase |
| LMH93_RS29480 (LMH93_29480) | 42412..42897 | - | 486 | WP_028691945.1 | hypothetical protein | - |
| LMH93_RS29485 (LMH93_29485) | 43018..44436 | - | 1419 | WP_181726247.1 | IS1182 family transposase ISPfl3 | Transposase |
| LMH93_RS29490 (LMH93_29490) | 44549..45181 | - | 633 | WP_028691944.1 | hypothetical protein | - |
| LMH93_RS29495 (LMH93_29495) | 45194..45751 | - | 558 | WP_051555727.1 | Phospholipase D | VF |
| LMH93_RS29500 (LMH93_29500) | 45789..46124 | - | 336 | WP_028691942.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| LMH93_RS29505 (LMH93_29505) | 46153..47070 | - | 918 | WP_028691941.1 | Type IV secretion system protein virB1 | VF |
| LMH93_RS29510 (LMH93_29510) | 47054..48022 | - | 969 | WP_230065444.1 | Type IV secretion system protein VirB11 | VF |
| LMH93_RS29515 (LMH93_29515) | 48098..49360 | - | 1263 | WP_028691939.1 | Type IV secretion system protein virB10 | VF |
| LMH93_RS29520 (LMH93_29520) | 49363..50148 | - | 786 | WP_028691938.1 | Type IV secretion system protein virB9 | VF |
| LMH93_RS29525 (LMH93_29525) | 50176..50850 | - | 675 | WP_028691937.1 | type IV secretion system protein | - |
| LMH93_RS29530 (LMH93_29530) | 50850..51713 | - | 864 | WP_028691936.1 | type IV secretion system protein | - |
| LMH93_RS29535 (LMH93_29535) | 51701..52093 | - | 393 | WP_028691935.1 | hypothetical protein | - |
| LMH93_RS29540 (LMH93_29540) | 52086..52298 | - | 213 | WP_028691934.1 | hypothetical protein | - |
| LMH93_RS29545 (LMH93_29545) | 52326..53015 | - | 690 | WP_077563720.1 | type IV secretion system protein | - |
| LMH93_RS29550 (LMH93_29550) | 53015..55699 | - | 2685 | WP_054890149.1 | Type IV secretion system protein virB4 | VF |
| LMH93_RS29555 (LMH93_29555) | 55686..55982 | - | 297 | WP_011005967.1 | VirB3 family type IV secretion system protein | - |
| LMH93_RS29560 (LMH93_29560) | 55991..56452 | - | 462 | WP_047710201.1 | TrbC/VirB2 family protein | - |
| LMH93_RS29565 (LMH93_29565) | 57456..58223 | + | 768 | WP_028691931.1 | Chromosome-partitioning ATPase Soj | VF |
| LMH93_RS29570 (LMH93_29570) | 58234..59178 | + | 945 | WP_028691930.1 | ParB/RepB/Spo0J family partition protein | - |
| LMH93_RS29575 (LMH93_29575) | 59175..59525 | + | 351 | WP_028691929.1 | TrfB-related DNA-binding protein | - |
| LMH93_RS29580 (LMH93_29580) | 59522..59929 | + | 408 | WP_028691928.1 | hypothetical protein | - |
| LMH93_RS29585 (LMH93_29585) | 60187..60822 | + | 636 | WP_028691927.1 | Tn3 family transposase TnpR_TnEc1 | Transposase |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|