MGE detailed information
MGE type: Genomic_island MGE length: 9049 bp
Accession: NZ_CP087136 Location: 4561401..4570449 Organism: Escherichia coli strain JW5503 Replicon: chromosome
Accession: NZ_CP087136 Location: 4561401..4570449 Organism: Escherichia coli strain JW5503 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOX89_RS22165 (4557985) | 4557985..4558905 | + | 921 | Protein_4336 | Rpn family recombination-promoting nuclease/putative transposase | - |
| LOX89_RS22170 (4559149) | 4559149..4560561 | - | 1413 | WP_000199300.1 | PLP-dependent aminotransferase family protein | - |
| LOX89_RS22175 (4560738) | 4560738..4560902 | + | 165 | WP_000394280.1 | DUF1127 domain-containing protein | - |
| LOX89_RS22180 (4561401) | 4561401..4562909 | + | 1509 | Protein_4339 | protein YjiT | - |
| LOX89_RS22185 (4562906) | 4562906..4565842 | + | 2937 | Protein_4340 | hypothetical protein | - |
| LOX89_RS22190 (4565899) | 4565899..4566945 | - | 1047 | WP_000437621.1 | 5-methylcytosine-specific restriction endonuclease system specificity protein McrC | - |
| LOX89_RS22195 (4566945) | 4566945..4568324 | - | 1380 | WP_000443951.1 | 5-methylcytosine-specific restriction endonuclease subunit McrB | - |
| LOX89_RS22200 (4568486) | 4568486..4568827 | - | 342 | WP_000132601.1 | endoribonuclease SymE | Toxin Detail |
| - (4568822) | 4568822..4568898 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4568822) | 4568822..4568898 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4568822) | 4568822..4568898 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4568822) | 4568822..4568898 | + | 77 | NuclAT_14 | - | Antitoxin Detail |
| - (4568822) | 4568822..4568898 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - (4568822) | 4568822..4568898 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - (4568822) | 4568822..4568898 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| - (4568822) | 4568822..4568898 | + | 77 | NuclAT_15 | - | Antitoxin Detail |
| LOX89_RS22205 (4569055) | 4569055..4570449 | - | 1395 | WP_001272447.1 | type I restriction-modification system specificity subunit | - |
| LOX89_RS22210 (4570446) | 4570446..4572035 | - | 1590 | WP_001063204.1 | type I restriction-modification system methyltransferase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Escherichia coli str. K-12 substr. MC4100 | Genomic island | TA20090 | HG738867 | 4458009..4467057 | 0 | |
| Escherichia coli str. K-12 substr. MG1655 | Genomic island | TA6352 | NC_000913 | 4572414..4581462 | 0 | |
| Escherichia coli str. K-12 substr. W3110 | Genomic island | TA21461 | NC_007779 | 4577094..4586142 | 0 | |
| Escherichia coli BW2952 | Genomic island | TA6351 | NC_012759 | 4508921..4517969 | 0 | |
| Escherichia coli DH1 | Genomic island | TA27427 | NC_017638 | 4552192..4561240 | 0 | |
| Escherichia coli BW25113 | Genomic island | TA48706 | NZ_CP009273 | 4562231..4571279 | 0 | |
| Escherichia coli strain DH5alpha | Genomic island | TA90501 | NZ_CP025520 | 3428612..3437660 | 0 | |
| Escherichia coli str. K-12 substr. MC4100 strain K-12 | Genomic island | TA285035 | NZ_HG738867 | 4458009..4467057 | 0 |