MGE detailed information
MGE type: Prophage MGE length: 86697 bp
Accession: NZ_CP087136 Location: 1341782..1428478 Organism: Escherichia coli strain JW5503 Replicon: chromosome
Accession: NZ_CP087136 Location: 1341782..1428478 Organism: Escherichia coli strain JW5503 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOX89_RS06625 (1337462) | 1337462..1337788 | + | 327 | WP_001295580.1 | stress response translation initiation inhibitor YciH | - |
| LOX89_RS06630 (1337914) | 1337914..1338132 | - | 219 | WP_000498253.1 | osmotically-inducible lipoprotein OsmB | - |
| LOX89_RS06635 (1338401) | 1338401..1339150 | - | 750 | WP_001088620.1 | DNA-binding transcriptional regulator YciT | - |
| LOX89_RS06640 (1339240) | 1339240..1339413 | - | 174 | WP_001288368.1 | protein YciZ | - |
| LOX89_RS06645 (1339451) | 1339451..1339579 | + | 129 | WP_211180493.1 | protein YmiD | - |
| LOX89_RS06650 (1339561) | 1339561..1341546 | - | 1986 | WP_000859945.1 | cyclic di-GMP phosphodiesterase | - |
| LOX89_RS06655 (1341600) | 1341600..1341704 | + | 105 | WP_000221855.1 | hypothetical protein | - |
| LOX89_RS06660 (1341782) | 1341782..1343716 | - | 1935 | WP_000484984.1 | exoribonuclease II | - |
| LOX89_RS06665 (1343784) | 1343784..1344911 | - | 1128 | WP_001335988.1 | CMD domain-containing protein | - |
| LOX89_RS06670 (1345055) | 1345055..1345843 | - | 789 | WP_000506490.1 | enoyl-ACP reductase FabI | - |
| LOX89_RS06675 (1346211) | 1346211..1346564 | - | 354 | WP_000565727.1 | DUF559 domain-containing protein | - |
| LOX89_RS06680 (1346632) | 1346632..1347438 | - | 807 | WP_000573407.1 | peptide ABC transporter ATP-binding protein SapF | - |
| LOX89_RS06685 (1347440) | 1347440..1348432 | - | 993 | WP_001128858.1 | peptide ABC transporter ATP-binding protein SapD | - |
| LOX89_RS06690 (1348432) | 1348432..1349322 | - | 891 | WP_001146163.1 | peptide ABC transporter permease SapC | - |
| LOX89_RS06695 (1349309) | 1349309..1350274 | - | 966 | WP_000583277.1 | putrescine export ABC transporter permease SapB | - |
| LOX89_RS06700 (1350271) | 1350271..1351914 | - | 1644 | WP_001250216.1 | ABC transporter substrate-binding protein SapA | - |
| LOX89_RS06705 (1352227) | 1352227..1352472 | - | 246 | WP_001015110.1 | YmjA family protein | - |
| LOX89_RS06710 (1352606) | 1352606..1353991 | - | 1386 | WP_000996856.1 | putrescine/proton symporter PuuP | - |
| LOX89_RS06715 (1353981) | 1353981..1354145 | - | 165 | WP_120795382.1 | protein YmjE | - |
| LOX89_RS06720 (1354294) | 1354294..1355712 | - | 1419 | WP_001296746.1 | glutamate-putrescine ligase | - |
| LOX89_RS06725 (1355924) | 1355924..1356688 | + | 765 | WP_001300506.1 | hypothetical protein | VF |
| LOX89_RS06730 (1356715) | 1356715..1357272 | + | 558 | WP_001278727.1 | HTH-type transcriptional regulator PuuR | - |
| LOX89_RS06735 (1357547) | 1357547..1359034 | + | 1488 | WP_001009090.1 | aldehyde dehydrogenase PuuC | - |
| LOX89_RS06740 (1359036) | 1359036..1360316 | + | 1281 | WP_000134870.1 | gamma-glutamylputrescine oxidase | - |
| LOX89_RS06745 (1360354) | 1360354..1361619 | + | 1266 | WP_000069229.1 | hypothetical protein | VF |
| LOX89_RS06750 (1361739) | 1361739..1362716 | - | 978 | WP_001301108.1 | hypothetical protein | VF |
| LOX89_RS06755 (1362883) | 1362883..1363551 | + | 669 | WP_000511025.1 | phage shock protein PspA | - |
| LOX89_RS06760 (1363605) | 1363605..1363829 | + | 225 | WP_001274963.1 | envelope stress response membrane protein PspB | - |
| LOX89_RS06765 (1363829) | 1363829..1364188 | + | 360 | WP_000907387.1 | envelope stress response membrane protein PspC | - |
| LOX89_RS06770 (1364197) | 1364197..1364418 | + | 222 | WP_001295585.1 | phage shock protein PspD | - |
| LOX89_RS06775 (1364493) | 1364493..1364807 | + | 315 | WP_000473109.1 | thiosulfate sulfurtransferase PspE | - |
| LOX89_RS06780 (1365020) | 1365020..1366699 | + | 1680 | WP_000810499.1 | glucosylglycerate phosphorylase | - |
| LOX89_RS06785 (1366713) | 1366713..1368005 | + | 1293 | WP_000597466.1 | ABC transporter substrate-binding protein | - |
| LOX89_RS06790 (1368026) | 1368026..1368907 | + | 882 | WP_001080790.1 | sugar ABC transporter permease | - |
| LOX89_RS06795 (1368894) | 1368894..1369736 | + | 843 | WP_000224659.1 | carbohydrate ABC transporter permease | - |
| LOX89_RS06800 (1369767) | 1369767..1370819 | + | 1053 | WP_000737347.1 | zinc-binding alcohol dehydrogenase | - |
| LOX89_RS06805 (1370838) | 1370838..1371626 | + | 789 | WP_000690229.1 | sugar phosphate isomerase/epimerase | - |
| LOX89_RS06810 (1371636) | 1371636..1372691 | + | 1056 | WP_001395397.1 | Gfo/Idh/MocA family oxidoreductase | - |
| LOX89_RS06815 (1372688) | 1372688..1374955 | + | 2268 | WP_000198036.1 | kojibiose phosphorylase | - |
| LOX89_RS06820 (1374952) | 1374952..1375611 | + | 660 | WP_000775794.1 | beta-phosphoglucomutase | - |
| LOX89_RS06825 (1375625) | 1375625..1376706 | + | 1082 | Protein_1332 | hypothetical protein | VF |
| LOX89_RS06830 (1376751) | 1376751..1377656 | + | 906 | WP_000735257.1 | monomeric porin OmpG | - |
| LOX89_RS06835 (1377767) | 1377767..1378765 | - | 999 | WP_000075375.1 | LacI family DNA-binding transcriptional regulator | - |
| LOX89_RS06840 (1378921) | 1378921..1380318 | + | 1398 | WP_000825775.1 | YcjX family protein | - |
| LOX89_RS06845 (1380315) | 1380315..1381376 | + | 1062 | WP_000138728.1 | YcjF family protein | - |
| LOX89_RS06850 (1381524) | 1381524..1383065 | + | 1542 | WP_001300658.1 | hypothetical protein | VF |
| LOX89_RS06855 (1383109) | 1383109..1383615 | - | 507 | WP_000084387.1 | thiol peroxidase | - |
| LOX89_RS06860 (1383734) | 1383734..1384699 | + | 966 | WP_001261211.1 | L-Ala-D/L-Glu epimerase | - |
| LOX89_RS06865 (1384674) | 1384674..1385402 | - | 729 | WP_000219122.1 | murein tripeptide amidase MpaA | - |
| LOX89_RS06870 (1385529) | 1385529..1385666 | - | 138 | Protein_1341 | NAD-dependent dehydratase | - |
| LOX89_RS06875 (1385737) | 1385737..1386657 | - | 921 | WP_001300523.1 | alpha/beta hydrolase | - |
| LOX89_RS06880 (1386795) | 1386795..1387694 | + | 900 | WP_000817708.1 | hypothetical protein | VF |
| LOX89_RS06885 (1388031) | 1388031..1389644 | + | 1614 | WP_000683020.1 | murein tripeptide ABC transporter substrate-binding protein MppA | - |
| LOX89_RS06890 (1389695) | 1389695..1390726 | - | 1032 | WP_000559900.1 | low conductance mechanosensitive channel YnaI | - |
| LOX89_RS06895 (1390916) | 1390916..1391896 | + | 981 | WP_000019403.1 | IS5 family transposase IS5D | Transposase |
| LOX89_RS06900 (1392169) | 1392169..1392426 | + | 258 | WP_000605090.1 | DUF2534 family protein | - |
| LOX89_RS06905 (1392476) | 1392476..1393426 | - | 951 | WP_001262123.1 | universal stress protein UspE | - |
| LOX89_RS06910 (1393578) | 1393578..1394330 | - | 753 | WP_000611911.1 | fumarate/nitrate reduction transcriptional regulator Fnr | - |
| LOX89_RS06915 (1394525) | 1394525..1395040 | - | 516 | WP_000945011.1 | methylated-DNA--[protein]-cysteine S-methyltransferase | - |
| LOX89_RS06920 (1395051) | 1395051..1396577 | - | 1527 | WP_000062973.1 | p-aminobenzoyl-glutamate transporter | - |
| LOX89_RS06925 (1396614) | 1396614..1398059 | - | 1446 | WP_001156451.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgB | - |
| LOX89_RS06930 (1398059) | 1398059..1399369 | - | 1311 | WP_000444929.1 | p-aminobenzoyl-glutamate hydrolase subunit AbgA | - |
| LOX89_RS06935 (1399545) | 1399545..1400453 | + | 909 | WP_000885458.1 | LysR family transcriptional regulator | - |
| LOX89_RS06940 (1400783) | 1400783..1401346 | + | 564 | WP_001046829.1 | DNA endonuclease SmrA | - |
| LOX89_RS06945 (1401367) | 1401367..1402599 | - | 1233 | WP_000628058.1 | diguanylate cyclase DgcM | - |
| LOX89_RS06950 (1402793) | 1402793..1402840 | + | 48 | WP_211180494.1 | protein YnaN | - |
| LOX89_RS06955 (1402854) | 1402854..1403837 | + | 984 | WP_000387388.1 | zinc transporter ZntB | - |
| LOX89_RS22545 (1404112) | 1404112..1404285 | + | 174 | WP_001296046.1 | protein YnaL | - |
| LOX89_RS06960 (1404315) | 1404315..1405688 | + | 1374 | WP_000123737.1 | ATP-dependent RNA helicase DbpA | - |
| LOX89_RS06965 (1405817) | 1405817..1406752 | - | 936 | WP_001157406.1 | tRNA 2-thiocytidine(32) synthetase TtcA | - |
| LOX89_RS06970 (1406804) | 1406804..1408039 | - | 1236 | WP_000040852.1 | hypothetical protein ; Integrase | Integrase |
| LOX89_RS06975 (1408041) | 1408041..1408256 | - | 216 | WP_000079604.1 | excisionase XisR | - |
| - (1408360) | 1408360..1408538 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1408360) | 1408360..1408538 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1408360) | 1408360..1408538 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| - (1408360) | 1408360..1408538 | + | 179 | NuclAT_0 | - | Antitoxin Detail |
| LOX89_RS06980 (1408335) | 1408335..1408544 | - | 210 | WP_000276809.1 | double-strand break reduction protein RcbA | - |
| LOX89_RS06985 (1408537) | 1408537..1408731 | - | 195 | WP_001317028.1 | type I toxin-antitoxin system endodeoxyribonuclease toxin RalR | Toxin Detail |
| LOX89_RS06990 (1408788) | 1408788..1409597 | - | 810 | WP_000166319.1 | recombination protein RecT | - |
| LOX89_RS06995 (1409590) | 1409590..1412190 | - | 2601 | WP_000105143.1 | exodeoxyribonuclease VIII | - |
| LOX89_RS07000 (1412292) | 1412292..1412567 | - | 276 | WP_000632297.1 | protein RacC | - |
| LOX89_RS07005 (1412642) | 1412642..1412812 | - | 171 | WP_001352098.1 | YdaE family protein | - |
| LOX89_RS07010 (1412812) | 1412812..1413033 | - | 222 | WP_000560225.1 | killing protein KilR | - |
| LOX89_RS07015 (1413475) | 1413475..1413963 | + | 489 | WP_001312793.1 | superinfection exclusion B family protein | - |
| LOX89_RS07020 (1413960) | 1413960..1414115 | - | 156 | WP_001169151.1 | YdaF family protein | - |
| LOX89_RS22550 (1414126) | 1414126..1414260 | - | 135 | WP_000233809.1 | phage protein | - |
| LOX89_RS07025 (1414569) | 1414569..1415045 | - | 477 | WP_000948459.1 | DNA-binding transcriptional repressor RacR | - |
| LOX89_RS07030 (1415169) | 1415169..1415465 | + | 297 | WP_000712069.1 | toxin YdaS | - |
| LOX89_RS07035 (1415488) | 1415488..1415910 | + | 423 | WP_000693797.1 | toxin YdaT family protein | - |
| LOX89_RS07040 (1415923) | 1415923..1416780 | + | 858 | WP_000899748.1 | YdaU family protein | - |
| LOX89_RS07045 (1416787) | 1416787..1417533 | + | 747 | WP_000788970.1 | ATP-binding protein | - |
| LOX89_RS07050 (1417556) | 1417556..1418008 | + | 453 | Protein_1379 | DUF1627 domain-containing protein | - |
| LOX89_RS22555 (1418204) | 1418204..1418389 | + | 186 | WP_001228696.1 | prophage lysis lipoprotein RzoD | - |
| LOX89_RS07065 (1418586) | 1418586..1420043 | + | 1458 | WP_001097895.1 | Trk system potassium transporter TrkG | - |
| LOX89_RS07070 (1420181) | 1420181..1420444 | + | 264 | WP_001350510.1 | ParB/Srx family N-terminal domain-containing protein | - |
| LOX89_RS07075 (1420425) | 1420425..1420784 | + | 360 | WP_000091628.1 | protein YdaY | - |
| LOX89_RS07080 (1421258) | 1421258..1422190 | + | 933 | Protein_1384 | phage tail length tape measure family protein | - |
| LOX89_RS07085 (1422193) | 1422193..1422408 | + | 216 | Protein_1385 | Ail/Lom family outer membrane beta-barrel protein | - |
| LOX89_RS07090 (1422550) | 1422550..1423530 | - | 981 | WP_000019448.1 | IS5 family transposase ISKpn26 | Transposase |
| LOX89_RS07095 (1423600) | 1423600..1423788 | + | 189 | Protein_1387 | Ail/Lom family outer membrane beta-barrel protein | - |
| LOX89_RS07100 (1423853) | 1423853..1427215 | + | 3363 | WP_000279097.1 | prophage tail fiber N-terminal domain-containing protein | - |
| LOX89_RS07105 (1427215) | 1427215..1427790 | + | 576 | WP_001698950.1 | tail fiber assembly protein | - |
| LOX89_RS07110 (1427888) | 1427888..1428478 | - | 591 | WP_000086527.1 | Tn3 family transposase TnpR_ISSba14 | Transposase |
| LOX89_RS07115 (1428795) | 1428795..1429028 | - | 234 | WP_000836770.1 | cold shock protein YdfK | - |
| LOX89_RS07120 (1429097) | 1429097..1429210 | - | 114 | WP_120795384.1 | YnaM/YnfT family protein | - |
| LOX89_RS07125 (1429989) | 1429989..1430423 | - | 435 | WP_001300461.1 | universal stress protein UspF | - |
| LOX89_RS07130 (1430564) | 1430564..1431697 | - | 1134 | WP_000837921.1 | porin OmpN | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|