MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 157665 bp
Accession: NZ_CP087010 Location: 1..157665 Organism: Pseudosulfitobacter pseudonitzschiae strain MC52-71 Replicon: plasmid P1
Accession: NZ_CP087010 Location: 1..157665 Organism: Pseudosulfitobacter pseudonitzschiae strain MC52-71 Replicon: plasmid P1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE46_RS19260 (LOE46_19265) | 168..1802 | + | 1635 | WP_229939245.1 | Mu transposase C-terminal domain-containing protein | - |
| LOE46_RS19265 (LOE46_19270) | 1819..2685 | + | 867 | WP_224558017.1 | TniB family NTP-binding protein | - |
| LOE46_RS19270 (LOE46_19275) | 3709..4305 | - | 597 | WP_109535033.1 | SMC-Scp complex subunit ScpB | - |
| LOE46_RS19275 (LOE46_19280) | 4309..5193 | - | 885 | WP_229939227.1 | DUF1403 family protein | - |
| LOE46_RS19280 (LOE46_19285) | 5352..6446 | + | 1095 | WP_224556253.1 | tyrosine-type recombinase/integrase | - |
| LOE46_RS19285 (LOE46_19290) | 6550..9888 | - | 3339 | WP_224556255.1 | DEAD/DEAH box helicase | - |
| LOE46_RS19290 (LOE46_19295) | 10093..10980 | + | 888 | WP_114273238.1 | Tn3 family transposase ISPsy42 | Transposase |
| LOE46_RS19295 (LOE46_19300) | 11422..12624 | + | 1203 | WP_089852475.1 | Sporulation initiation inhibitor protein Soj | VF |
| LOE46_RS19300 (LOE46_19305) | 12614..13573 | + | 960 | WP_121066477.1 | plasmid partitioning protein RepB | - |
| LOE46_RS19305 (LOE46_19310) | 13813..14970 | + | 1158 | WP_121066480.1 | helix-turn-helix domain-containing protein | - |
| LOE46_RS19310 (LOE46_19315) | 15036..16079 | + | 1044 | WP_114276417.1 | IS5 family transposase ISPmar3 | Transposase |
| LOE46_RS19315 (LOE46_19320) | 16370..18547 | + | 2178 | WP_224556256.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE46_RS19320 (LOE46_19325) | 18647..19120 | + | 474 | WP_114276003.1 | hypothetical protein | - |
| LOE46_RS19325 (LOE46_19330) | 19504..19668 | + | 165 | WP_007803240.1 | hypothetical protein | - |
| LOE46_RS19330 (LOE46_19335) | 19907..21352 | + | 1446 | WP_114276004.1 | hypothetical protein | - |
| LOE46_RS19335 (LOE46_19340) | 21362..21649 | - | 288 | WP_009827212.1 | H-NS histone family protein | - |
| LOE46_RS19340 (LOE46_19345) | 22069..22473 | + | 405 | WP_009827211.1 | single-stranded DNA-binding protein | - |
| LOE46_RS19345 (LOE46_19350) | 22528..23124 | - | 597 | WP_037954955.1 | hypothetical protein | - |
| LOE46_RS19350 (LOE46_19355) | 23164..24069 | + | 906 | WP_114276002.1 | hypothetical protein | - |
| LOE46_RS19355 (LOE46_19360) | 24207..25406 | + | 1200 | WP_121066443.1 | DUF932 domain-containing protein | - |
| LOE46_RS19360 (LOE46_19365) | 25534..25974 | + | 441 | WP_114276349.1 | DNA repair protein RadC | - |
| LOE46_RS19365 (LOE46_19370) | 26084..26602 | + | 519 | WP_114276373.1 | DNA repair protein RadC | - |
| LOE46_RS19370 (LOE46_19375) | 26706..27197 | + | 492 | WP_067297141.1 | hypothetical protein | - |
| LOE46_RS19375 (LOE46_19380) | 27208..27585 | + | 378 | WP_114276348.1 | hypothetical protein | - |
| LOE46_RS19380 (LOE46_19385) | 27587..27784 | + | 198 | WP_047998245.1 | hypothetical protein | - |
| LOE46_RS19385 (LOE46_19390) | 27860..28279 | + | 420 | WP_067297244.1 | hypothetical protein | - |
| LOE46_RS19390 (LOE46_19395) | 28272..28916 | + | 645 | WP_121066445.1 | antitoxin of toxin-antitoxin stability system | - |
| LOE46_RS19395 (LOE46_19400) | 28975..29376 | + | 402 | WP_067297291.1 | MbcA/ParS/Xre antitoxin family protein | - |
| LOE46_RS19400 (LOE46_19405) | 29373..30074 | + | 702 | WP_067297288.1 | RES family NAD+ phosphorylase | - |
| LOE46_RS19405 (LOE46_19410) | 30597..30890 | - | 294 | WP_067297285.1 | hypothetical protein | - |
| LOE46_RS19410 (LOE46_19415) | 31067..31447 | + | 381 | Protein_30 | hypothetical protein | - |
| LOE46_RS19415 (LOE46_19420) | 31549..32658 | + | 1110 | WP_224558030.1 | IS110 family transposase ISEc45 | Transposase |
| LOE46_RS19420 (LOE46_19425) | 32884..35553 | + | 2670 | WP_229939218.1 | strawberry notch family protein | - |
| LOE46_RS19425 (LOE46_19430) | 35530..35976 | - | 447 | Protein_33 | IS6 family transposase | - |
| LOE46_RS19430 (LOE46_19435) | 36046..36636 | + | 591 | WP_052418560.1 | LysR substrate-binding domain-containing protein | - |
| LOE46_RS19435 (LOE46_19440) | 36667..37587 | + | 921 | WP_043755133.1 | HTH-type transcriptional regulator GltC | VF |
| LOE46_RS19440 (LOE46_19445) | 37736..38734 | + | 999 | WP_052418559.1 | TRAP transporter substrate-binding protein DctP | - |
| LOE46_RS19445 (LOE46_19450) | 38800..39345 | + | 546 | WP_081979733.1 | TRAP transporter small permease | - |
| LOE46_RS19450 (LOE46_19455) | 39345..40625 | + | 1281 | WP_052418558.1 | TRAP transporter large permease | - |
| LOE46_RS19455 (LOE46_19460) | 40615..41958 | + | 1344 | WP_224557915.1 | MmgE/PrpD family protein | - |
| LOE46_RS19460 (LOE46_19465) | 41955..42449 | + | 495 | WP_043755128.1 | MaoC family dehydratase | - |
| LOE46_RS19465 (LOE46_19470) | 42446..43681 | + | 1236 | WP_043755124.1 | acyl-CoA dehydrogenase family protein | - |
| LOE46_RS19470 (LOE46_19475) | 43692..44177 | + | 486 | WP_043755138.1 | MaoC family dehydratase | - |
| LOE46_RS19475 (LOE46_19480) | 44174..45403 | + | 1230 | WP_043755120.1 | CoA transferase | - |
| LOE46_RS19480 (LOE46_19485) | 45413..46330 | + | 918 | WP_043755117.1 | CoA ester lyase | - |
| LOE46_RS19490 (LOE46_19495) | 47220..47850 | - | 631 | Protein_46 | IS3 family transposase ISPko4 | Transposase |
| LOE46_RS19495 (LOE46_19500) | 47911..48330 | + | 420 | WP_229940658.1 | hypothetical protein | - |
| LOE46_RS19500 (LOE46_19505) | 48531..49250 | - | 720 | WP_224557875.1 | hypothetical protein | - |
| LOE46_RS19505 (LOE46_19510) | 49407..50267 | + | 861 | WP_224557876.1 | LysR family transcriptional regulator | - |
| LOE46_RS19510 (LOE46_19515) | 50622..51641 | - | 1020 | WP_224557877.1 | IS110 family transposase ISAzs4 | Transposase |
| LOE46_RS19515 (LOE46_19520) | 51767..52192 | + | 426 | WP_224557878.1 | hypothetical protein | - |
| LOE46_RS19520 (LOE46_19525) | 52267..53232 | - | 966 | WP_224557879.1 | Transcriptional regulatory protein AfsQ1 | VF |
| LOE46_RS19525 (LOE46_19530) | 53229..54566 | - | 1338 | WP_224557880.1 | HAMP domain-containing sensor histidine kinase | - |
| LOE46_RS19530 (LOE46_19535) | 54563..55045 | - | 483 | WP_224557881.1 | molybdopterin-dependent oxidoreductase | - |
| LOE46_RS19535 (LOE46_19540) | 55182..55733 | + | 552 | WP_224557882.1 | hypothetical protein | - |
| LOE46_RS19540 (LOE46_19545) | 55735..56307 | + | 573 | WP_224557883.1 | hypothetical protein | - |
| LOE46_RS19545 (LOE46_19550) | 56316..56795 | + | 480 | WP_224557884.1 | hypothetical protein | - |
| LOE46_RS19550 (LOE46_19555) | 56792..57319 | + | 528 | WP_224557885.1 | hypothetical protein | - |
| LOE46_RS19555 (LOE46_19560) | 57316..57840 | + | 525 | WP_224557886.1 | hypothetical protein | - |
| LOE46_RS19560 (LOE46_19565) | 57864..58835 | + | 972 | WP_224557888.1 | hypothetical protein | - |
| LOE46_RS19565 (LOE46_19570) | 58832..61132 | + | 2301 | WP_224557889.1 | VWA domain-containing protein | - |
| LOE46_RS19570 (LOE46_19575) | 61129..61665 | + | 537 | WP_229940780.1 | hypothetical protein | - |
| LOE46_RS19575 (LOE46_19580) | 61662..61874 | + | 213 | WP_224557891.1 | hypothetical protein | - |
| LOE46_RS19580 (LOE46_19585) | 61877..62801 | - | 925 | Protein_64 | IS5 family transposase ISUnCu15 | Transposase |
| LOE46_RS19585 (LOE46_19590) | 63121..64149 | - | 1029 | WP_224557892.1 | IS110 family transposase ISPko7 | Transposase |
| LOE46_RS19590 (LOE46_19595) | 64433..66661 | - | 2229 | WP_224557893.1 | glycosyltransferase | - |
| LOE46_RS19595 (LOE46_19600) | 66658..67722 | - | 1065 | WP_224557894.1 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | - |
| LOE46_RS19600 (LOE46_19605) | 68193..69556 | + | 1364 | WP_229939207.1 | IS3 family transposase ISPko4 | Transposase |
| LOE46_RS19605 (LOE46_19610) | 69659..70459 | + | 801 | WP_284145095.1 | zinc-binding dehydrogenase | - |
| LOE46_RS19610 (LOE46_19615) | 70478..71008 | - | 531 | WP_224557955.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| LOE46_RS19615 (LOE46_19620) | 71072..74539 | + | 3468 | WP_224557954.1 | indolepyruvate ferredoxin oxidoreductase family protein | - |
| LOE46_RS19620 (LOE46_19625) | 74638..75648 | + | 1011 | WP_224557953.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| LOE46_RS19625 (LOE46_19630) | 76031..77190 | + | 1160 | WP_224557952.1 | IS3 family transposase ISOba2 | Transposase |
| LOE46_RS19630 (LOE46_19635) | 77214..77411 | - | 198 | WP_224557951.1 | hypothetical protein | - |
| LOE46_RS19635 (LOE46_19640) | 77466..78851 | - | 1386 | WP_224558008.1 | ISKra4 family transposase ISUnCu7 | Transposase |
| LOE46_RS19640 (LOE46_19645) | 78878..79459 | - | 582 | WP_224558009.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| LOE46_RS19645 (LOE46_19650) | 79578..80240 | - | 663 | WP_224558010.1 | plasmid pRiA4b ORF-3 family protein | - |
| LOE46_RS19650 (LOE46_19655) | 80301..80627 | - | 327 | Protein_78 | DEAD/DEAH box helicase family protein | - |
| LOE46_RS19655 (LOE46_19660) | 80803..82257 | - | 1455 | WP_229941945.1 | ATP-binding protein | - |
| LOE46_RS19660 (LOE46_19665) | 82437..83495 | - | 1059 | WP_224557922.1 | HEPN domain-containing protein | - |
| LOE46_RS19665 (LOE46_19670) | 83492..86242 | - | 2751 | WP_224557923.1 | lactate dehydrogenase | - |
| LOE46_RS19670 (LOE46_19675) | 86239..86661 | - | 423 | WP_224557924.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LOE46_RS19675 (LOE46_19680) | 86665..86913 | - | 249 | WP_229939240.1 | plasmid stabilization protein | Antitoxin Detail |
| LOE46_RS19680 (LOE46_19685) | 87061..88050 | - | 990 | WP_224557926.1 | Type IV secretion system protein VirB11 | VF |
| LOE46_RS19685 (LOE46_19690) | 88161..89618 | - | 1458 | WP_224557927.1 | Type IV secretion system protein PtlG | VF |
| LOE46_RS19690 (LOE46_19695) | 89621..90352 | - | 732 | WP_224557928.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LOE46_RS19695 (LOE46_19700) | 90356..91000 | - | 645 | WP_224557929.1 | Type IV secretion system protein PtlE | VF |
| LOE46_RS19700 (LOE46_19705) | 91003..92004 | - | 1002 | WP_224557930.1 | type IV secretion system protein | - |
| LOE46_RS19705 (LOE46_19710) | 92004..92492 | - | 489 | WP_229939238.1 | hypothetical protein | - |
| LOE46_RS19710 (LOE46_19715) | 92496..93305 | - | 810 | WP_224557967.1 | type IV secretion system protein | - |
| LOE46_RS19715 (LOE46_19720) | 93295..94383 | - | 1089 | WP_224557968.1 | lytic transglycosylase domain-containing protein | - |
| LOE46_RS19720 (LOE46_19725) | 94549..96807 | - | 2259 | WP_229940657.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LOE46_RS19725 (LOE46_19730) | 96908..97183 | - | 276 | WP_009819926.1 | VirB3 family type IV secretion system protein | - |
| LOE46_RS19730 (LOE46_19735) | 97207..97491 | - | 285 | WP_224557971.1 | hypothetical protein | VF |
| LOE46_RS19735 (LOE46_19740) | 97488..98069 | - | 582 | WP_224557975.1 | lytic transglycosylase domain-containing protein | - |
| LOE46_RS19740 (LOE46_19745) | 98119..98460 | - | 342 | WP_224557973.1 | hypothetical protein | - |
| LOE46_RS19745 (LOE46_19750) | 98658..98927 | + | 270 | WP_111550073.1 | hypothetical protein | - |
| LOE46_RS19750 (LOE46_19755) | 99013..99666 | + | 654 | WP_121066465.1 | hypothetical protein | - |
| LOE46_RS19755 (LOE46_19760) | 99887..101044 | + | 1158 | WP_229939233.1 | replication initiation protein RepC | - |
| LOE46_RS19760 (LOE46_19765) | 101299..101964 | + | 666 | WP_067293124.1 | L,D-transpeptidase | - |
| LOE46_RS19765 (LOE46_19770) | 102048..102317 | - | 270 | WP_111550076.1 | hypothetical protein | - |
| LOE46_RS19770 (LOE46_19775) | 102335..102925 | - | 591 | WP_224557758.1 | L,D-transpeptidase | - |
| LOE46_RS19775 (LOE46_19780) | 103034..103591 | - | 558 | WP_040652314.1 | methyltransferase | - |
| LOE46_RS19780 (LOE46_19785) | 103584..104492 | - | 909 | Protein_104 | cation diffusion facilitator family transporter | - |
| LOE46_RS19785 (LOE46_19790) | 104482..105252 | - | 771 | WP_067293121.1 | transglutaminase family protein | - |
| LOE46_RS19790 (LOE46_19795) | 105339..105956 | - | 618 | WP_024099354.1 | cation transporter | - |
| LOE46_RS19795 (LOE46_19800) | 106070..106396 | - | 327 | WP_067293118.1 | YnfA family protein | - |
| LOE46_RS19800 (LOE46_19805) | 106393..106821 | - | 429 | WP_224557734.1 | IS607 family transposase ISChh1 | Transposase |
| LOE46_RS19805 (LOE46_19810) | 107069..107608 | + | 540 | WP_223865966.1 | SCO family protein | - |
| LOE46_RS19810 (LOE46_19815) | 107605..108048 | + | 444 | WP_007120864.1 | disulfide bond formation protein B | - |
| LOE46_RS19815 (LOE46_19820) | 108045..108707 | + | 663 | WP_067293112.1 | thioredoxin domain-containing protein | - |
| LOE46_RS19820 (LOE46_19825) | 108778..109209 | + | 432 | WP_067293146.1 | copper chaperone PCu(A)C | - |
| LOE46_RS19825 (LOE46_19830) | 109221..109841 | + | 621 | WP_224557759.1 | SCO family protein | - |
| LOE46_RS19830 (LOE46_19835) | 109871..111187 | + | 1317 | WP_229940656.1 | M23 family metallopeptidase | - |
| LOE46_RS19835 (LOE46_19840) | 111208..111660 | + | 453 | WP_067293107.1 | DUF411 domain-containing protein | - |
| LOE46_RS19840 (LOE46_19845) | 111671..112453 | + | 783 | WP_090270173.1 | ZIP family metal transporter | - |
| LOE46_RS19845 (LOE46_19850) | 112457..112933 | + | 477 | WP_067293102.1 | signal peptidase II | - |
| LOE46_RS19850 (LOE46_19855) | 112940..114475 | + | 1536 | WP_224557736.1 | apolipoprotein N-acyltransferase | - |
| LOE46_RS19855 (LOE46_19860) | 114472..114636 | + | 165 | WP_170134538.1 | hypothetical protein | - |
| LOE46_RS19860 (LOE46_19865) | 114662..115162 | - | 501 | WP_067293139.1 | L,D-transpeptidase family protein | - |
| LOE46_RS19865 (LOE46_19870) | 115224..117575 | - | 2352 | WP_190325599.1 | cation-translocating P-type ATPase | - |
| LOE46_RS19870 (LOE46_19875) | 117792..120119 | + | 2328 | WP_111550081.1 | Copper-transporting P-type ATPase | VF |
| LOE46_RS19875 (LOE46_19880) | 120646..121044 | + | 399 | WP_067293094.1 | FixH family protein | - |
| LOE46_RS19880 (LOE46_19885) | 121041..122477 | + | 1437 | WP_067293091.1 | Cation efflux system protein CusB | VF |
| LOE46_RS19885 (LOE46_19890) | 122474..125629 | + | 3156 | WP_224557738.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| LOE46_RS19890 (LOE46_19895) | 125673..126914 | - | 1242 | WP_224557739.1 | sialidase family protein | - |
| LOE46_RS19895 (LOE46_19900) | 127011..127469 | - | 459 | WP_037929563.1 | cytochrome c | - |
| LOE46_RS19900 (LOE46_19905) | 127466..128770 | - | 1305 | WP_009820143.1 | ABC transporter transmembrane domain-containing protein | - |
| LOE46_RS19905 (LOE46_19910) | 128779..129312 | - | 534 | WP_009820144.1 | plastocyanin/azurin family copper-binding protein | - |
| LOE46_RS19910 (LOE46_19915) | 129422..130138 | - | 717 | WP_037929554.1 | copper-binding protein | - |
| LOE46_RS19915 (LOE46_19920) | 130185..131543 | - | 1359 | WP_224557742.1 | copper oxidase | - |
| LOE46_RS19920 (LOE46_19925) | 131555..133015 | - | 1461 | WP_067293082.1 | TolC family protein | - |
| LOE46_RS19925 (LOE46_19930) | 133015..133236 | - | 222 | WP_223865963.1 | hypothetical protein | - |
| LOE46_RS19930 (LOE46_19935) | 133310..133726 | - | 417 | WP_037929545.1 | hypothetical protein | - |
| LOE46_RS19935 (LOE46_19940) | 133899..134108 | - | 210 | WP_037929722.1 | heavy-metal-associated domain-containing protein | - |
| LOE46_RS19940 (LOE46_19945) | 134247..136754 | + | 2508 | WP_067293079.1 | heavy metal translocating P-type ATPase | - |
| LOE46_RS19945 (LOE46_19950) | 136774..137193 | + | 420 | WP_037929540.1 | Cu(I)-responsive transcriptional regulator | - |
| LOE46_RS19950 (LOE46_19955) | 137301..138170 | + | 870 | WP_037929537.1 | DUF305 domain-containing protein | - |
| LOE46_RS19955 (LOE46_19960) | 138232..138957 | + | 726 | WP_037929534.1 | glutaredoxin domain-containing protein | - |
| LOE46_RS19960 (LOE46_19965) | 139044..140153 | + | 1110 | WP_224557743.1 | permease | - |
| LOE46_RS19965 (LOE46_19970) | 140150..140890 | - | 741 | WP_037929528.1 | cytochrome c biogenesis protein CcdA | - |
| LOE46_RS19970 (LOE46_19975) | 140887..141378 | - | 492 | WP_081855445.1 | hypothetical protein | - |
| LOE46_RS19975 (LOE46_19980) | 141375..142079 | - | 705 | WP_037929522.1 | SCO family protein | - |
| LOE46_RS19980 (LOE46_19985) | 142079..142369 | - | 291 | WP_037929519.1 | hypothetical protein | - |
| LOE46_RS19985 (LOE46_19990) | 142452..142964 | - | 513 | WP_037929516.1 | TlpA disulfide reductase family protein | - |
| LOE46_RS19990 (LOE46_19995) | 142961..143557 | - | 597 | WP_037929514.1 | DsbE family thiol:disulfide interchange protein | - |
| LOE46_RS19995 (LOE46_20000) | 143554..143979 | - | 426 | WP_224557746.1 | cytochrome c | - |
| LOE46_RS23760 | 144129..144263 | - | 135 | WP_263481059.1 | hypothetical protein | - |
| LOE46_RS20000 (LOE46_20005) | 144330..144785 | - | 456 | WP_037929510.1 | DUF411 domain-containing protein | - |
| LOE46_RS20005 (LOE46_20010) | 144826..146265 | - | 1440 | WP_082899302.1 | multicopper oxidase family protein | - |
| LOE46_RS20010 (LOE46_20015) | 146356..146709 | - | 354 | WP_224557748.1 | hypothetical protein | - |
| LOE46_RS20015 (LOE46_20020) | 146921..147544 | - | 624 | WP_037929504.1 | hypothetical protein | - |
| LOE46_RS20020 (LOE46_20025) | 147562..148290 | - | 729 | WP_224557750.1 | HupE/UreJ family protein | - |
| LOE46_RS20025 (LOE46_20030) | 148792..149052 | + | 261 | WP_007120627.1 | metal-sensing transcriptional repressor | - |
| LOE46_RS20030 (LOE46_20035) | 149061..150380 | + | 1320 | WP_224557751.1 | MFS transporter | - |
| LOE46_RS20035 (LOE46_20040) | 150554..151513 | - | 960 | WP_224557752.1 | hypothetical protein | - |
| LOE46_RS20040 (LOE46_20045) | 152115..152636 | - | 522 | WP_224557753.1 | hypothetical protein | - |
| LOE46_RS20045 (LOE46_20050) | 152649..153512 | - | 864 | WP_224557754.1 | hypothetical protein | - |
| LOE46_RS20050 (LOE46_20055) | 153530..155461 | - | 1932 | WP_229941949.1 | VWA domain-containing protein | - |
| LOE46_RS20055 (LOE46_20060) | 155775..157532 | + | 1758 | WP_224557756.1 | alpha/beta hydrolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|