MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 82248 bp
Accession: NZ_CP087008 Location: 1..82248 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-105 Replicon: plasmid P6
Accession: NZ_CP087008 Location: 1..82248 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-105 Replicon: plasmid P6
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE06_RS23350 (LOE06_23325) | 653..2095 | - | 1443 | WP_224557601.1 | FAD-binding oxidoreductase | - |
| LOE06_RS23355 (LOE06_23330) | 2121..3806 | - | 1686 | WP_224557602.1 | thiamine pyrophosphate-binding protein | - |
| LOE06_RS23360 (LOE06_23335) | 3828..5702 | - | 1875 | WP_051694623.1 | TRAP transporter permease | - |
| LOE06_RS23365 (LOE06_23340) | 5788..6750 | - | 963 | WP_224557603.1 | TAXI family TRAP transporter solute-binding subunit | - |
| LOE06_RS23370 (LOE06_23345) | 7017..7769 | + | 753 | WP_224557604.1 | FCD domain-containing protein | - |
| LOE06_RS23375 (LOE06_23350) | 7766..8551 | + | 786 | WP_224557605.1 | adenine nucleotide alpha hydrolase | - |
| LOE06_RS23380 (LOE06_23355) | 8544..9239 | + | 696 | WP_224557607.1 | nickel pincer cofactor biosynthesis protein LarB | - |
| LOE06_RS23385 (LOE06_23360) | 9255..9971 | + | 717 | WP_037930086.1 | FadR/GntR family transcriptional regulator | - |
| LOE06_RS23390 (LOE06_23365) | 9981..10298 | + | 318 | WP_224557608.1 | NIPSNAP family protein | - |
| LOE06_RS23395 (LOE06_23370) | 10329..11777 | - | 1449 | WP_224557609.1 | putative ABC transporter ATP-binding protein YejF | VF |
| LOE06_RS23400 (LOE06_23375) | 11774..12538 | - | 765 | WP_229939311.1 | ABC transporter permease subunit | - |
| LOE06_RS23405 (LOE06_23380) | 12582..13511 | - | 930 | WP_224557611.1 | ABC transporter permease | - |
| LOE06_RS23410 (LOE06_23385) | 13508..14650 | - | 1143 | WP_284145096.1 | ABC transporter substrate-binding protein | - |
| LOE06_RS23415 (LOE06_23390) | 14726..17616 | - | 2891 | Protein_14 | Tn3 family transposase | - |
| LOE06_RS23420 (LOE06_23395) | 17783..18370 | + | 588 | WP_101754700.1 | Tn3 family transposase TnpR_ISRsp12 | Transposase |
| LOE06_RS23425 (LOE06_23400) | 18449..19267 | - | 819 | Protein_16 | GTP-binding protein | - |
| LOE06_RS23430 (LOE06_23405) | 19606..19839 | - | 234 | WP_224557538.1 | hypothetical protein | - |
| LOE06_RS23435 (LOE06_23410) | 19968..20273 | + | 306 | WP_037930066.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LOE06_RS23440 (LOE06_23415) | 20260..21189 | + | 930 | WP_224557539.1 | alpha/beta hydrolase | - |
| LOE06_RS23445 (LOE06_23420) | 21420..21848 | - | 429 | WP_224557541.1 | DUF4345 domain-containing protein | - |
| LOE06_RS23450 (LOE06_23425) | 21908..22546 | + | 639 | WP_224557543.1 | TetR/AcrR family transcriptional regulator | - |
| LOE06_RS23455 (LOE06_23430) | 22648..23862 | + | 1215 | WP_224557545.1 | MFS transporter | - |
| LOE06_RS23460 (LOE06_23435) | 23926..24900 | - | 975 | WP_224557547.1 | 2-hydroxyacid dehydrogenase | - |
| LOE06_RS23465 (LOE06_23440) | 24906..26441 | - | 1536 | WP_224557548.1 | aldehyde dehydrogenase (NADP(+)) | - |
| LOE06_RS23470 (LOE06_23445) | 26703..28442 | + | 1740 | WP_224557550.1 | L-arabinonate dehydratase | - |
| LOE06_RS23475 (LOE06_23450) | 28453..29358 | + | 906 | WP_224557552.1 | dihydrodipicolinate synthase family protein | - |
| LOE06_RS23480 (LOE06_23455) | 29429..29722 | + | 294 | WP_224557554.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LOE06_RS23485 (LOE06_23460) | 29715..29990 | + | 276 | WP_224557555.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LOE06_RS23490 (LOE06_23465) | 30459..31196 | - | 738 | WP_229940771.1 | GntR family transcriptional regulator | - |
| LOE06_RS23495 (LOE06_23470) | 31321..32868 | + | 1548 | WP_224557559.1 | altronate dehydratase family protein | - |
| LOE06_RS23500 (LOE06_23475) | 32885..34201 | + | 1317 | WP_224557560.1 | lactate racemase domain-containing protein | - |
| LOE06_RS23505 (LOE06_23480) | 34201..35379 | + | 1179 | WP_224557561.1 | LarC family nickel insertion protein | - |
| LOE06_RS23510 (LOE06_23485) | 35578..36273 | - | 696 | WP_224557562.1 | PRC-barrel domain-containing protein | - |
| LOE06_RS23515 (LOE06_23490) | 36564..37442 | - | 879 | WP_224557563.1 | Glucose-1-phosphate thymidylyltransferase 1 | VF |
| LOE06_RS23520 (LOE06_23495) | 37439..38494 | - | 1056 | WP_224557564.1 | dTDP-glucose 4,6-dehydratase 2 | VF |
| LOE06_RS23525 (LOE06_23500) | 38491..39051 | - | 561 | WP_224557565.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
| LOE06_RS23530 (LOE06_23505) | 39140..40057 | - | 918 | WP_224557566.1 | dihydrodipicolinate synthase family protein | - |
| LOE06_RS23535 (LOE06_23510) | 40094..41020 | - | 927 | WP_224557568.1 | Gfo/Idh/MocA family oxidoreductase | - |
| LOE06_RS23540 (LOE06_23515) | 41020..42762 | - | 1743 | WP_224557569.1 | L-arabinonate dehydratase | - |
| LOE06_RS23545 (LOE06_23520) | 42775..43971 | - | 1197 | WP_224557570.1 | sugar ABC transporter permease | - |
| LOE06_RS23550 (LOE06_23525) | 43984..45504 | - | 1521 | WP_224557571.1 | Xylose import ATP-binding protein XylG | VF |
| LOE06_RS23555 (LOE06_23530) | 45586..46650 | - | 1065 | WP_224557572.1 | sugar ABC transporter substrate-binding protein | - |
| LOE06_RS23560 (LOE06_23535) | 46819..47751 | + | 933 | WP_224557573.1 | LysR family transcriptional regulator | - |
| LOE06_RS23565 (LOE06_23540) | 47841..48143 | + | 303 | WP_224557574.1 | antibiotic biosynthesis monooxygenase | - |
| LOE06_RS23570 (LOE06_23545) | 48155..49021 | + | 867 | WP_224557575.1 | ECF RNA polymerase sigma factor SigJ | VF |
| LOE06_RS23575 (LOE06_23550) | 49430..50386 | + | 957 | WP_224557576.1 | helix-turn-helix domain-containing protein | - |
| LOE06_RS23580 (LOE06_23555) | 50516..52039 | + | 1524 | WP_224557578.1 | aldehyde dehydrogenase family protein | - |
| LOE06_RS23585 (LOE06_23560) | 52208..54043 | + | 1836 | WP_224557579.1 | Serine/threonine-protein kinase toxin HipA | VF |
| LOE06_RS23590 (LOE06_23565) | 54252..54938 | - | 687 | WP_229939282.1 | 3-oxoacid CoA-transferase subunit B | - |
| LOE06_RS23595 (LOE06_23570) | 54935..55642 | - | 708 | WP_224557581.1 | 3-oxoacid CoA-transferase subunit A | - |
| LOE06_RS23600 (LOE06_23575) | 55755..56510 | + | 756 | WP_224557583.1 | IclR family transcriptional regulator C-terminal domain-containing protein | - |
| LOE06_RS23605 (LOE06_23580) | 57085..58674 | + | 1590 | WP_224557585.1 | CHAT domain-containing protein | - |
| LOE06_RS23610 (LOE06_23585) | 58671..60107 | + | 1437 | WP_224557587.1 | hypothetical protein | - |
| LOE06_RS23615 (LOE06_23590) | 60244..61254 | - | 1011 | WP_037930116.1 | RepB family plasmid replication initiator protein | - |
| LOE06_RS23620 (LOE06_23595) | 61880..63082 | + | 1203 | WP_224557588.1 | Cell division protein PomZ | VF |
| LOE06_RS23625 (LOE06_23600) | 63079..64059 | + | 981 | WP_224557589.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE06_RS23630 (LOE06_23605) | 64158..66230 | - | 2073 | WP_224557590.1 | caspase family protein | - |
| LOE06_RS23635 (LOE06_23610) | 66242..66862 | - | 621 | WP_224557591.1 | hypothetical protein | - |
| LOE06_RS23640 (LOE06_23615) | 67020..68303 | + | 1284 | WP_229940774.1 | trypsin-like peptidase domain-containing protein | - |
| LOE06_RS23645 (LOE06_23620) | 68296..68991 | + | 696 | WP_224557593.1 | Transcriptional regulatory protein CusR | VF |
| LOE06_RS23650 (LOE06_23625) | 68988..70313 | + | 1326 | WP_224557594.1 | Sensor protein RstB | VF |
| LOE06_RS23655 (LOE06_23630) | 70355..71809 | + | 1455 | WP_224557595.1 | patatin-like phospholipase family protein | - |
| LOE06_RS23660 (LOE06_23635) | 71967..72554 | - | 588 | WP_037930134.1 | cbb3-type cytochrome c oxidase subunit I | - |
| LOE06_RS23665 (LOE06_23640) | 72842..73405 | + | 564 | WP_224557596.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| LOE06_RS23670 (LOE06_23645) | 73569..75539 | + | 1971 | WP_224557597.1 | caspase family protein | - |
| LOE06_RS23675 (LOE06_23650) | 75545..76591 | + | 1047 | WP_081855458.1 | serine protease | - |
| LOE06_RS23680 (LOE06_23655) | 76561..79287 | + | 2727 | WP_224557598.1 | hypothetical protein | - |
| LOE06_RS23685 (LOE06_23660) | 79426..80133 | + | 708 | WP_143186815.1 | hypothetical protein | - |
| LOE06_RS23690 (LOE06_23665) | 80142..81815 | + | 1674 | WP_224557599.1 | CHAT domain-containing protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|