MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 157667 bp
Accession: NZ_CP087006 Location: 1..157667 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-105 Replicon: plasmid P4
Accession: NZ_CP087006 Location: 1..157667 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-105 Replicon: plasmid P4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE06_RS22105 (LOE06_22075) | 104..988 | + | 885 | WP_229939227.1 | DUF1403 family protein | - |
| LOE06_RS22110 (LOE06_22080) | 992..1588 | + | 597 | WP_109535033.1 | SMC-Scp complex subunit ScpB | - |
| LOE06_RS22115 (LOE06_22085) | 2612..3478 | - | 867 | Protein_2 | TniB family NTP-binding protein | - |
| LOE06_RS22120 (LOE06_22090) | 3869..4849 | - | 981 | Protein_3 | DDE-type integrase/transposase/recombinase | - |
| LOE06_RS22125 (LOE06_22095) | 5429..7186 | - | 1758 | WP_224557756.1 | alpha/beta hydrolase | - |
| LOE06_RS22130 (LOE06_22100) | 7422..9431 | + | 2010 | WP_284145682.1 | VWA domain-containing protein | - |
| LOE06_RS22135 (LOE06_22105) | 9449..10312 | + | 864 | WP_224557754.1 | hypothetical protein | - |
| LOE06_RS22140 (LOE06_22110) | 10325..10846 | + | 522 | WP_224557753.1 | hypothetical protein | - |
| LOE06_RS22145 (LOE06_22115) | 11448..12407 | + | 960 | WP_224557752.1 | hypothetical protein | - |
| LOE06_RS22150 (LOE06_22120) | 12581..13900 | - | 1320 | WP_224557751.1 | MFS transporter | - |
| LOE06_RS22155 (LOE06_22125) | 13909..14169 | - | 261 | WP_007120627.1 | metal-sensing transcriptional repressor | - |
| LOE06_RS22160 (LOE06_22130) | 14671..15399 | + | 729 | WP_224557750.1 | HupE/UreJ family protein | - |
| LOE06_RS22165 (LOE06_22135) | 15417..16040 | + | 624 | WP_037929504.1 | hypothetical protein | - |
| LOE06_RS22170 (LOE06_22140) | 16252..16605 | + | 354 | WP_224557748.1 | hypothetical protein | - |
| LOE06_RS22175 (LOE06_22145) | 16696..18135 | + | 1440 | WP_082899302.1 | multicopper oxidase family protein | - |
| LOE06_RS22180 (LOE06_22150) | 18176..18631 | + | 456 | WP_037929510.1 | DUF411 domain-containing protein | - |
| LOE06_RS23755 | 18698..18832 | + | 135 | WP_263481059.1 | hypothetical protein | - |
| LOE06_RS22185 (LOE06_22155) | 18982..19407 | + | 426 | WP_224557746.1 | cytochrome c | - |
| LOE06_RS22190 (LOE06_22160) | 19404..20000 | + | 597 | WP_037929514.1 | DsbE family thiol:disulfide interchange protein | - |
| LOE06_RS22195 (LOE06_22165) | 19997..20509 | + | 513 | WP_037929516.1 | TlpA disulfide reductase family protein | - |
| LOE06_RS22200 (LOE06_22170) | 20592..20882 | + | 291 | WP_037929519.1 | hypothetical protein | - |
| LOE06_RS22205 (LOE06_22175) | 20882..21586 | + | 705 | WP_037929522.1 | SCO family protein | - |
| LOE06_RS22210 (LOE06_22180) | 21583..22074 | + | 492 | WP_081855445.1 | hypothetical protein | - |
| LOE06_RS22215 (LOE06_22185) | 22071..22811 | + | 741 | WP_037929528.1 | cytochrome c biogenesis protein CcdA | - |
| LOE06_RS22220 (LOE06_22190) | 22808..23917 | - | 1110 | WP_224557743.1 | permease | - |
| LOE06_RS22225 (LOE06_22195) | 24004..24729 | - | 726 | WP_037929534.1 | glutaredoxin domain-containing protein | - |
| LOE06_RS22230 (LOE06_22200) | 24791..25660 | - | 870 | WP_037929537.1 | DUF305 domain-containing protein | - |
| LOE06_RS22235 (LOE06_22205) | 25768..26187 | - | 420 | WP_037929540.1 | Cu(I)-responsive transcriptional regulator | - |
| LOE06_RS22240 (LOE06_22210) | 26207..28714 | - | 2508 | WP_067293079.1 | heavy metal translocating P-type ATPase | - |
| LOE06_RS22245 (LOE06_22215) | 28853..29062 | + | 210 | WP_037929722.1 | heavy-metal-associated domain-containing protein | - |
| LOE06_RS22250 (LOE06_22220) | 29235..29651 | + | 417 | WP_037929545.1 | hypothetical protein | - |
| LOE06_RS22255 (LOE06_22225) | 29725..29946 | + | 222 | WP_223865963.1 | hypothetical protein | - |
| LOE06_RS22260 (LOE06_22230) | 29946..31406 | + | 1461 | WP_067293082.1 | TolC family protein | - |
| LOE06_RS22265 (LOE06_22235) | 31418..32776 | + | 1359 | WP_224557742.1 | copper oxidase | - |
| LOE06_RS22270 (LOE06_22240) | 32823..33539 | + | 717 | WP_037929554.1 | copper-binding protein | - |
| LOE06_RS22275 (LOE06_22245) | 33649..34182 | + | 534 | WP_009820144.1 | plastocyanin/azurin family copper-binding protein | - |
| LOE06_RS22280 (LOE06_22250) | 34191..35495 | + | 1305 | WP_009820143.1 | ABC transporter transmembrane domain-containing protein | - |
| LOE06_RS22285 (LOE06_22255) | 35510..35950 | + | 441 | WP_009820142.1 | cytochrome c | - |
| LOE06_RS22290 (LOE06_22260) | 36047..37288 | + | 1242 | WP_224557739.1 | sialidase family protein | - |
| LOE06_RS22295 (LOE06_22265) | 37332..40487 | - | 3156 | WP_224557738.1 | CusA/CzcA family heavy metal efflux RND transporter | - |
| LOE06_RS22300 (LOE06_22270) | 40484..41920 | - | 1437 | WP_067293091.1 | Cation efflux system protein CusB | VF |
| LOE06_RS22305 (LOE06_22275) | 41917..42315 | - | 399 | WP_067293094.1 | FixH family protein | - |
| LOE06_RS22310 (LOE06_22280) | 42842..45169 | - | 2328 | WP_111550081.1 | Copper-transporting P-type ATPase | VF |
| LOE06_RS22315 (LOE06_22285) | 45386..47737 | + | 2352 | WP_190325599.1 | cation-translocating P-type ATPase | - |
| LOE06_RS22320 (LOE06_22290) | 47799..48299 | + | 501 | WP_067293139.1 | L,D-transpeptidase family protein | - |
| LOE06_RS22325 (LOE06_22295) | 48325..48489 | - | 165 | WP_170134538.1 | hypothetical protein | - |
| LOE06_RS22330 (LOE06_22300) | 48486..50021 | - | 1536 | WP_224557736.1 | apolipoprotein N-acyltransferase | - |
| LOE06_RS22335 (LOE06_22305) | 50028..50504 | - | 477 | WP_067293102.1 | signal peptidase II | - |
| LOE06_RS22340 (LOE06_22310) | 50508..51290 | - | 783 | WP_090270173.1 | ZIP family metal transporter | - |
| LOE06_RS22345 (LOE06_22315) | 51301..51753 | - | 453 | WP_067293107.1 | DUF411 domain-containing protein | - |
| LOE06_RS22350 (LOE06_22320) | 51774..53123 | - | 1350 | WP_224557735.1 | M23 family metallopeptidase | - |
| LOE06_RS22355 (LOE06_22325) | 53120..53740 | - | 621 | WP_224557759.1 | SCO family protein | - |
| LOE06_RS22360 (LOE06_22330) | 53752..54183 | - | 432 | WP_067293146.1 | copper chaperone PCu(A)C | - |
| LOE06_RS22365 (LOE06_22335) | 54254..54916 | - | 663 | WP_067293112.1 | thioredoxin domain-containing protein | - |
| LOE06_RS22370 (LOE06_22340) | 54913..55356 | - | 444 | WP_007120864.1 | disulfide bond formation protein B | - |
| LOE06_RS22375 (LOE06_22345) | 55353..55892 | - | 540 | WP_223865966.1 | SCO family protein | - |
| LOE06_RS22380 (LOE06_22350) | 56140..56568 | + | 429 | WP_224557734.1 | IS607 family transposase ISChh1 | Transposase |
| LOE06_RS22385 (LOE06_22355) | 56565..56891 | + | 327 | WP_067293118.1 | YnfA family protein | - |
| LOE06_RS22390 (LOE06_22360) | 57005..57622 | + | 618 | WP_024099354.1 | cation transporter | - |
| LOE06_RS22395 (LOE06_22365) | 57709..58479 | + | 771 | WP_067293121.1 | transglutaminase family protein | - |
| LOE06_RS22400 (LOE06_22370) | 58469..59377 | + | 909 | Protein_60 | cation diffusion facilitator family transporter | - |
| LOE06_RS22405 (LOE06_22375) | 59370..59927 | + | 558 | WP_040652314.1 | methyltransferase | - |
| LOE06_RS22410 (LOE06_22380) | 60036..60626 | + | 591 | WP_224557758.1 | L,D-transpeptidase | - |
| LOE06_RS22415 (LOE06_22385) | 60644..60913 | + | 270 | WP_111550076.1 | hypothetical protein | - |
| LOE06_RS22420 (LOE06_22390) | 60997..61662 | - | 666 | WP_067293124.1 | L,D-transpeptidase | - |
| LOE06_RS22425 (LOE06_22395) | 61917..63074 | - | 1158 | WP_229939233.1 | replication initiation protein RepC | - |
| LOE06_RS22430 (LOE06_22400) | 63295..63948 | - | 654 | WP_121066465.1 | hypothetical protein | - |
| LOE06_RS22435 (LOE06_22405) | 64034..64303 | - | 270 | WP_111550073.1 | hypothetical protein | - |
| LOE06_RS22440 (LOE06_22415) | 64892..65473 | + | 582 | WP_224557975.1 | lytic transglycosylase domain-containing protein | - |
| LOE06_RS22445 (LOE06_22420) | 65470..65754 | + | 285 | WP_224557971.1 | hypothetical protein | VF |
| LOE06_RS22450 (LOE06_22425) | 65778..66053 | + | 276 | WP_009819926.1 | VirB3 family type IV secretion system protein | - |
| LOE06_RS22455 (LOE06_22430) | 66193..68412 | + | 2220 | WP_224557969.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LOE06_RS22460 (LOE06_22435) | 68578..69666 | + | 1089 | WP_224557968.1 | lytic transglycosylase domain-containing protein | - |
| LOE06_RS22465 (LOE06_22440) | 69656..70465 | + | 810 | WP_224557967.1 | type IV secretion system protein | - |
| LOE06_RS22470 (LOE06_22445) | 70469..70957 | + | 489 | WP_229939238.1 | hypothetical protein | - |
| LOE06_RS22475 (LOE06_22450) | 70957..71958 | + | 1002 | WP_224557930.1 | type IV secretion system protein | - |
| LOE06_RS22480 (LOE06_22455) | 71961..72605 | + | 645 | WP_224557929.1 | Type IV secretion system protein PtlE | VF |
| LOE06_RS22485 (LOE06_22460) | 72609..73340 | + | 732 | WP_224557928.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LOE06_RS22490 (LOE06_22465) | 73343..74800 | + | 1458 | WP_224557927.1 | Type IV secretion system protein PtlG | VF |
| LOE06_RS22495 (LOE06_22470) | 74911..75900 | + | 990 | WP_224557926.1 | Type IV secretion system protein VirB11 | VF |
| LOE06_RS22500 (LOE06_22475) | 76048..76296 | + | 249 | WP_229939240.1 | plasmid stabilization protein | Antitoxin Detail |
| LOE06_RS22505 (LOE06_22480) | 76300..76722 | + | 423 | WP_224557924.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LOE06_RS22510 (LOE06_22485) | 76719..79469 | + | 2751 | WP_224557923.1 | lactate dehydrogenase | - |
| LOE06_RS22515 (LOE06_22490) | 79466..80524 | + | 1059 | WP_224557922.1 | HEPN domain-containing protein | - |
| LOE06_RS22520 (LOE06_22495) | 80686..82158 | + | 1473 | WP_224557920.1 | ATP-binding protein | - |
| LOE06_RS22525 (LOE06_22500) | 82334..82660 | + | 327 | Protein_85 | DEAD/DEAH box helicase family protein | - |
| LOE06_RS22530 (LOE06_22505) | 82721..83383 | + | 663 | WP_224558010.1 | plasmid pRiA4b ORF-3 family protein | - |
| LOE06_RS22535 (LOE06_22510) | 83502..84083 | + | 582 | WP_224558009.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| LOE06_RS22540 (LOE06_22515) | 84209..85494 | + | 1286 | Protein_88 | ISKra4 family transposase ISUnCu7 | Transposase |
| LOE06_RS22545 (LOE06_22520) | 85549..85746 | + | 198 | WP_224557951.1 | hypothetical protein | - |
| LOE06_RS22555 (LOE06_22530) | 87312..88322 | - | 1011 | WP_224557953.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| LOE06_RS22560 (LOE06_22535) | 88421..91888 | - | 3468 | WP_224557954.1 | indolepyruvate ferredoxin oxidoreductase family protein | - |
| LOE06_RS22565 (LOE06_22540) | 91952..92482 | + | 531 | WP_224557955.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| LOE06_RS22570 (LOE06_22545) | 92501..93301 | - | 801 | WP_284145095.1 | zinc-binding dehydrogenase | - |
| LOE06_RS22580 (LOE06_22555) | 95238..96302 | + | 1065 | WP_224557894.1 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | - |
| LOE06_RS22585 (LOE06_22560) | 96299..98527 | + | 2229 | WP_224557893.1 | glycosyltransferase | - |
| LOE06_RS22590 (LOE06_22565) | 98811..99839 | + | 1029 | WP_224557892.1 | IS110 family transposase ISPko7 | Transposase |
| LOE06_RS22595 (LOE06_22570) | 100159..101083 | + | 925 | Protein_99 | IS5 family transposase ISUnCu15 | Transposase |
| LOE06_RS22600 (LOE06_22575) | 101086..101298 | - | 213 | WP_224557891.1 | hypothetical protein | - |
| LOE06_RS22605 (LOE06_22580) | 101295..101831 | - | 537 | WP_229940780.1 | hypothetical protein | - |
| LOE06_RS22610 (LOE06_22585) | 101828..104128 | - | 2301 | WP_224557889.1 | VWA domain-containing protein | - |
| LOE06_RS22615 (LOE06_22590) | 104125..105096 | - | 972 | WP_224557888.1 | hypothetical protein | - |
| LOE06_RS22620 (LOE06_22595) | 105120..105644 | - | 525 | WP_224557886.1 | hypothetical protein | - |
| LOE06_RS22625 (LOE06_22600) | 105641..106168 | - | 528 | WP_224557885.1 | hypothetical protein | - |
| LOE06_RS22630 (LOE06_22605) | 106165..106644 | - | 480 | WP_224557884.1 | hypothetical protein | - |
| LOE06_RS22635 (LOE06_22610) | 106653..107225 | - | 573 | WP_224557883.1 | hypothetical protein | - |
| LOE06_RS22640 (LOE06_22615) | 107227..107778 | - | 552 | WP_224557882.1 | hypothetical protein | - |
| LOE06_RS22645 (LOE06_22620) | 107915..108397 | + | 483 | WP_224557881.1 | molybdopterin-dependent oxidoreductase | - |
| LOE06_RS22650 (LOE06_22625) | 108394..109731 | + | 1338 | WP_224557880.1 | HAMP domain-containing sensor histidine kinase | - |
| LOE06_RS22655 (LOE06_22630) | 109728..110693 | + | 966 | WP_224557879.1 | Transcriptional regulatory protein AfsQ1 | VF |
| LOE06_RS22660 (LOE06_22635) | 110768..111193 | - | 426 | WP_224557878.1 | hypothetical protein | - |
| LOE06_RS22665 (LOE06_22640) | 111319..112338 | + | 1020 | WP_224557877.1 | IS110 family transposase ISAzs4 | Transposase |
| LOE06_RS22670 (LOE06_22645) | 112693..113553 | - | 861 | WP_224557876.1 | LysR family transcriptional regulator | - |
| LOE06_RS22675 (LOE06_22650) | 113710..114429 | + | 720 | WP_229941126.1 | hypothetical protein | - |
| LOE06_RS22680 (LOE06_22655) | 114630..115049 | - | 420 | WP_229940658.1 | hypothetical protein | - |
| LOE06_RS22685 (LOE06_22660) | 115110..115740 | + | 631 | Protein_117 | IS3 family transposase ISPko4 | Transposase |
| LOE06_RS22690 (LOE06_22665) | 115806..116563 | + | 758 | WP_156127956.1 | IS5 family transposase IS1248A | Transposase |
| LOE06_RS22695 (LOE06_22670) | 116630..117547 | - | 918 | WP_043755117.1 | CoA ester lyase | - |
| LOE06_RS22700 (LOE06_22675) | 117557..118786 | - | 1230 | WP_043755120.1 | CoA transferase | - |
| LOE06_RS22705 (LOE06_22680) | 118783..119268 | - | 486 | WP_043755138.1 | MaoC family dehydratase | - |
| LOE06_RS22710 (LOE06_22685) | 119279..120514 | - | 1236 | WP_043755124.1 | acyl-CoA dehydrogenase family protein | - |
| LOE06_RS22715 (LOE06_22690) | 120511..121005 | - | 495 | WP_043755128.1 | MaoC family dehydratase | - |
| LOE06_RS22720 (LOE06_22695) | 121002..122345 | - | 1344 | WP_224557915.1 | MmgE/PrpD family protein | - |
| LOE06_RS22725 (LOE06_22700) | 122335..123615 | - | 1281 | WP_052418558.1 | TRAP transporter large permease | - |
| LOE06_RS22730 (LOE06_22705) | 123615..124160 | - | 546 | WP_081979733.1 | TRAP transporter small permease | - |
| LOE06_RS22735 (LOE06_22710) | 124226..125224 | - | 999 | WP_052418559.1 | TRAP transporter substrate-binding protein DctP | - |
| LOE06_RS22740 (LOE06_22715) | 125373..126293 | - | 921 | WP_043755133.1 | HTH-type transcriptional regulator GltC | VF |
| LOE06_RS22745 (LOE06_22720) | 126324..127043 | - | 720 | WP_229939243.1 | LysR substrate-binding domain-containing protein | - |
| LOE06_RS22750 (LOE06_22725) | 126984..127430 | + | 447 | Protein_130 | IS6 family transposase | - |
| LOE06_RS22755 (LOE06_22730) | 127407..130076 | - | 2670 | WP_229939218.1 | strawberry notch family protein | - |
| LOE06_RS22760 (LOE06_22735) | 130302..131412 | - | 1111 | Protein_132 | IS110 family transposase ISSfr2 | Transposase |
| LOE06_RS22765 (LOE06_22740) | 131514..131894 | - | 381 | Protein_133 | hypothetical protein | - |
| LOE06_RS22770 (LOE06_22745) | 132071..132364 | + | 294 | WP_067297285.1 | hypothetical protein | - |
| LOE06_RS22775 (LOE06_22750) | 132887..133588 | - | 702 | WP_067297288.1 | RES family NAD+ phosphorylase | - |
| LOE06_RS22780 (LOE06_22755) | 133585..133986 | - | 402 | WP_067297291.1 | MbcA/ParS/Xre antitoxin family protein | - |
| LOE06_RS22785 (LOE06_22760) | 134045..134689 | - | 645 | WP_121066445.1 | antitoxin of toxin-antitoxin stability system | - |
| LOE06_RS22790 (LOE06_22765) | 134682..135101 | - | 420 | WP_067297244.1 | hypothetical protein | - |
| LOE06_RS22795 (LOE06_22770) | 135177..135374 | - | 198 | WP_047998245.1 | hypothetical protein | - |
| LOE06_RS22800 (LOE06_22775) | 135376..135753 | - | 378 | WP_114276348.1 | hypothetical protein | - |
| LOE06_RS22805 (LOE06_22780) | 135764..136255 | - | 492 | WP_067297141.1 | hypothetical protein | - |
| LOE06_RS22810 (LOE06_22785) | 136359..136877 | - | 519 | WP_114276373.1 | DNA repair protein RadC | - |
| LOE06_RS22815 (LOE06_22790) | 136987..137427 | - | 441 | WP_114276349.1 | DNA repair protein RadC | - |
| LOE06_RS22820 (LOE06_22795) | 137555..138754 | - | 1200 | WP_121066443.1 | DUF932 domain-containing protein | - |
| LOE06_RS22825 (LOE06_22800) | 138892..139797 | - | 906 | WP_114276002.1 | hypothetical protein | - |
| LOE06_RS22830 (LOE06_22805) | 139837..140433 | + | 597 | WP_037954955.1 | hypothetical protein | - |
| LOE06_RS22835 (LOE06_22810) | 140488..140892 | - | 405 | WP_009827211.1 | single-stranded DNA-binding protein | - |
| LOE06_RS22840 (LOE06_22815) | 141312..141599 | + | 288 | WP_009827212.1 | H-NS histone family protein | - |
| LOE06_RS22845 (LOE06_22820) | 141609..143054 | - | 1446 | WP_114276004.1 | hypothetical protein | - |
| LOE06_RS22850 (LOE06_22825) | 143293..143457 | - | 165 | WP_007803240.1 | hypothetical protein | - |
| LOE06_RS22855 (LOE06_22830) | 143841..144314 | - | 474 | WP_114276003.1 | hypothetical protein | - |
| LOE06_RS22860 (LOE06_22835) | 144414..146591 | - | 2178 | WP_224556256.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE06_RS22865 (LOE06_22840) | 146882..147926 | - | 1045 | Protein_153 | IS5 family transposase ISPmar3 | Transposase |
| LOE06_RS22870 (LOE06_22845) | 147992..149149 | - | 1158 | WP_121066480.1 | helix-turn-helix domain-containing protein | - |
| LOE06_RS22875 (LOE06_22850) | 149389..150348 | - | 960 | WP_121066477.1 | plasmid partitioning protein RepB | - |
| LOE06_RS22880 (LOE06_22855) | 150338..151540 | - | 1203 | WP_089852475.1 | Sporulation initiation inhibitor protein Soj | VF |
| LOE06_RS22885 (LOE06_22860) | 151982..152869 | - | 888 | WP_114273238.1 | Tn3 family transposase ISPsy42 | Transposase |
| LOE06_RS22890 (LOE06_22865) | 153074..156412 | + | 3339 | WP_224556255.1 | DEAD/DEAH box helicase | - |
| LOE06_RS22895 (LOE06_22870) | 156516..157610 | - | 1095 | WP_224556253.1 | tyrosine-type recombinase/integrase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|