MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 97224 bp
Accession: NZ_CP086993 Location: 1..97224 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-110 Replicon: plasmid P7
Accession: NZ_CP086993 Location: 1..97224 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-110 Replicon: plasmid P7
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE08_RS23235 (LOE08_23190) | 1..399 | - | 399 | Protein_0 | SMC-Scp complex subunit ScpB | - |
| LOE08_RS23240 (LOE08_23195) | 447..1311 | - | 865 | Protein_1 | DUF1403 family protein | - |
| LOE08_RS23245 (LOE08_23200) | 1470..2564 | + | 1095 | WP_224556253.1 | tyrosine-type recombinase/integrase | - |
| LOE08_RS23250 (LOE08_23205) | 2668..6006 | - | 3339 | WP_224556255.1 | DEAD/DEAH box helicase | - |
| LOE08_RS23255 (LOE08_23210) | 6211..7098 | + | 888 | WP_114273238.1 | recombinase family protein | - |
| LOE08_RS23260 (LOE08_23215) | 7540..8742 | + | 1203 | WP_089852475.1 | plasmid partitioning protein RepA | - |
| LOE08_RS23265 (LOE08_23220) | 8732..9691 | + | 960 | WP_121066477.1 | plasmid partitioning protein RepB | - |
| LOE08_RS23270 (LOE08_23225) | 9931..11088 | + | 1158 | WP_121066480.1 | helix-turn-helix domain-containing protein | - |
| LOE08_RS23275 (LOE08_23230) | 11154..12197 | + | 1044 | WP_114276417.1 | IS5 family transposase | - |
| LOE08_RS23280 (LOE08_23235) | 12488..14665 | + | 2178 | WP_224556256.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE08_RS23285 (LOE08_23240) | 14765..15238 | + | 474 | WP_114276003.1 | hypothetical protein | - |
| LOE08_RS23290 (LOE08_23245) | 15622..15786 | + | 165 | WP_007803240.1 | hypothetical protein | - |
| LOE08_RS23295 (LOE08_23250) | 16025..17470 | + | 1446 | WP_114276004.1 | hypothetical protein | - |
| LOE08_RS23300 (LOE08_23255) | 17480..17767 | - | 288 | WP_009827212.1 | H-NS histone family protein | - |
| LOE08_RS23305 (LOE08_23260) | 18187..18591 | + | 405 | WP_009827211.1 | single-stranded DNA-binding protein | - |
| LOE08_RS23310 (LOE08_23265) | 18646..19242 | - | 597 | WP_037954955.1 | hypothetical protein | - |
| LOE08_RS23315 (LOE08_23270) | 19282..20187 | + | 906 | WP_114276002.1 | hypothetical protein | - |
| LOE08_RS23320 (LOE08_23275) | 20325..21524 | + | 1200 | WP_121066443.1 | DUF932 domain-containing protein | - |
| LOE08_RS23325 (LOE08_23280) | 21652..22092 | + | 441 | WP_114276349.1 | DNA repair protein RadC | - |
| LOE08_RS23330 (LOE08_23285) | 22202..22720 | + | 519 | WP_114276373.1 | DNA repair protein RadC | - |
| LOE08_RS23335 (LOE08_23290) | 22824..23315 | + | 492 | WP_067297141.1 | hypothetical protein | - |
| LOE08_RS23340 (LOE08_23295) | 23326..23703 | + | 378 | WP_114276348.1 | hypothetical protein | - |
| LOE08_RS23345 (LOE08_23300) | 23705..23902 | + | 198 | WP_047998245.1 | hypothetical protein | - |
| LOE08_RS23350 (LOE08_23305) | 23978..24397 | + | 420 | WP_067297244.1 | hypothetical protein | - |
| LOE08_RS23355 (LOE08_23310) | 24390..25034 | + | 645 | WP_121066445.1 | antitoxin of toxin-antitoxin stability system | - |
| LOE08_RS23360 (LOE08_23315) | 25093..25494 | + | 402 | WP_067297291.1 | MbcA/ParS/Xre antitoxin family protein | - |
| LOE08_RS23365 (LOE08_23320) | 25491..26192 | + | 702 | WP_067297288.1 | RES family NAD+ phosphorylase | - |
| LOE08_RS23370 (LOE08_23325) | 26715..27008 | - | 294 | WP_067297285.1 | hypothetical protein | - |
| LOE08_RS23375 (LOE08_23330) | 27185..27565 | + | 381 | Protein_28 | hypothetical protein | - |
| LOE08_RS23380 (LOE08_23335) | 27667..28775 | + | 1109 | Protein_29 | IS110 family transposase | - |
| LOE08_RS23385 (LOE08_23340) | 29001..31670 | + | 2670 | WP_229939218.1 | strawberry notch family protein | - |
| LOE08_RS23390 (LOE08_23345) | 31647..32093 | - | 447 | Protein_31 | IS6 family transposase | - |
| LOE08_RS23395 (LOE08_23350) | 32163..32753 | + | 591 | WP_052418560.1 | LysR substrate-binding domain-containing protein | - |
| LOE08_RS23400 (LOE08_23355) | 32784..33704 | + | 921 | WP_043755133.1 | LysR family transcriptional regulator | - |
| LOE08_RS23405 (LOE08_23360) | 33853..34851 | + | 999 | WP_052418559.1 | TRAP transporter substrate-binding protein DctP | - |
| LOE08_RS23410 (LOE08_23365) | 34917..35462 | + | 546 | WP_081979733.1 | TRAP transporter small permease | - |
| LOE08_RS23415 (LOE08_23370) | 35462..36742 | + | 1281 | WP_052418558.1 | TRAP transporter large permease | - |
| LOE08_RS23420 (LOE08_23375) | 36732..38075 | + | 1344 | WP_224557915.1 | MmgE/PrpD family protein | - |
| LOE08_RS23425 (LOE08_23380) | 38072..38566 | + | 495 | WP_043755128.1 | MaoC family dehydratase | - |
| LOE08_RS23430 (LOE08_23385) | 38563..39798 | + | 1236 | WP_043755124.1 | acyl-CoA dehydrogenase family protein | - |
| LOE08_RS23435 (LOE08_23390) | 39809..40294 | + | 486 | WP_043755138.1 | MaoC family dehydratase | - |
| LOE08_RS23440 (LOE08_23395) | 40291..41520 | + | 1230 | WP_043755120.1 | CoA transferase | - |
| LOE08_RS23445 (LOE08_23400) | 41530..42447 | + | 918 | WP_043755117.1 | CoA ester lyase | - |
| LOE08_RS23455 (LOE08_23410) | 43337..43967 | - | 631 | Protein_44 | transposase | - |
| LOE08_RS23460 (LOE08_23415) | 44028..44447 | + | 420 | WP_229940658.1 | hypothetical protein | - |
| LOE08_RS23465 (LOE08_23420) | 44648..45367 | - | 720 | WP_224557875.1 | hypothetical protein | - |
| LOE08_RS23470 (LOE08_23425) | 45524..46384 | + | 861 | WP_224557876.1 | LysR family transcriptional regulator | - |
| LOE08_RS23475 (LOE08_23430) | 46739..47758 | - | 1020 | WP_224557877.1 | IS110 family transposase | - |
| LOE08_RS23480 (LOE08_23435) | 47884..48309 | + | 426 | WP_224557878.1 | hypothetical protein | - |
| LOE08_RS23485 (LOE08_23440) | 48384..49349 | - | 966 | WP_224557879.1 | response regulator | - |
| LOE08_RS23490 (LOE08_23445) | 49346..50683 | - | 1338 | WP_224557880.1 | HAMP domain-containing sensor histidine kinase | - |
| LOE08_RS23495 (LOE08_23450) | 50680..51162 | - | 483 | WP_224557881.1 | molybdopterin-dependent oxidoreductase | - |
| LOE08_RS23500 (LOE08_23455) | 51299..51850 | + | 552 | WP_224557882.1 | hypothetical protein | - |
| LOE08_RS23505 (LOE08_23460) | 51852..52424 | + | 573 | WP_224557883.1 | hypothetical protein | - |
| LOE08_RS23510 (LOE08_23465) | 52433..52912 | + | 480 | WP_224557884.1 | hypothetical protein | - |
| LOE08_RS23515 (LOE08_23470) | 52909..53436 | + | 528 | WP_224557885.1 | hypothetical protein | - |
| LOE08_RS23520 (LOE08_23475) | 53433..53957 | + | 525 | WP_224557886.1 | hypothetical protein | - |
| LOE08_RS23525 (LOE08_23480) | 53981..54952 | + | 972 | WP_224557888.1 | hypothetical protein | - |
| LOE08_RS23530 (LOE08_23485) | 54949..57249 | + | 2301 | WP_224557889.1 | VWA domain-containing protein | - |
| LOE08_RS23535 (LOE08_23490) | 57246..57782 | + | 537 | WP_229940780.1 | hypothetical protein | - |
| LOE08_RS23540 | 57779..57991 | + | 213 | WP_224557891.1 | hypothetical protein | - |
| LOE08_RS23545 (LOE08_23495) | 57994..58918 | - | 925 | Protein_62 | IS5-like element ISUnCu15 family transposase | - |
| LOE08_RS23550 (LOE08_23500) | 59238..60266 | - | 1029 | WP_224557892.1 | IS110 family transposase | - |
| LOE08_RS23555 (LOE08_23505) | 60550..62778 | - | 2229 | WP_224557893.1 | glycosyltransferase | - |
| LOE08_RS23560 (LOE08_23510) | 62775..63800 | - | 1026 | WP_229942672.1 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | - |
| LOE08_RS23565 (LOE08_23515) | 64310..65673 | + | 1364 | WP_229939207.1 | IS3 family transposase | - |
| LOE08_RS23570 (LOE08_23520) | 65776..66576 | + | 801 | WP_284145095.1 | zinc-binding dehydrogenase | - |
| LOE08_RS23575 (LOE08_23525) | 66595..67125 | - | 531 | WP_224557955.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| LOE08_RS23580 (LOE08_23530) | 67189..70656 | + | 3468 | WP_224557954.1 | indolepyruvate ferredoxin oxidoreductase family protein | - |
| LOE08_RS23585 (LOE08_23535) | 70755..71765 | + | 1011 | WP_224557953.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| LOE08_RS23590 (LOE08_23540) | 72148..73307 | + | 1160 | WP_224557952.1 | IS3 family transposase | - |
| LOE08_RS23595 (LOE08_23545) | 73331..73528 | - | 198 | WP_224557951.1 | hypothetical protein | - |
| LOE08_RS23600 (LOE08_23550) | 73583..74968 | - | 1386 | WP_224558008.1 | ISKra4 family transposase | - |
| LOE08_RS23605 (LOE08_23555) | 74995..75576 | - | 582 | WP_224558009.1 | recombinase family protein | - |
| LOE08_RS23610 (LOE08_23560) | 75695..76357 | - | 663 | WP_224558010.1 | plasmid pRiA4b ORF-3 family protein | - |
| LOE08_RS23615 (LOE08_23565) | 76418..76744 | - | 327 | Protein_76 | DEAD/DEAH box helicase family protein | - |
| LOE08_RS23620 (LOE08_23570) | 76920..78374 | - | 1455 | WP_229941945.1 | ATP-binding protein | - |
| LOE08_RS23625 (LOE08_23575) | 78554..79612 | - | 1059 | WP_224557922.1 | HEPN domain-containing protein | - |
| LOE08_RS23630 (LOE08_23580) | 79609..82359 | - | 2751 | WP_224557923.1 | lactate dehydrogenase | - |
| LOE08_RS23635 (LOE08_23585) | 82356..82778 | - | 423 | WP_224557924.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LOE08_RS23640 (LOE08_23590) | 82782..83030 | - | 249 | WP_229939240.1 | plasmid stabilization protein | Antitoxin Detail |
| LOE08_RS23645 (LOE08_23595) | 83178..84167 | - | 990 | WP_224557926.1 | P-type DNA transfer ATPase VirB11 | - |
| LOE08_RS23650 (LOE08_23600) | 84278..85735 | - | 1458 | WP_224557927.1 | TrbI/VirB10 family protein | - |
| LOE08_RS23655 (LOE08_23605) | 85738..86469 | - | 732 | WP_224557928.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LOE08_RS23660 (LOE08_23610) | 86473..87117 | - | 645 | WP_224557929.1 | type IV secretion system protein | - |
| LOE08_RS23665 (LOE08_23615) | 87120..88121 | - | 1002 | WP_224557930.1 | type IV secretion system protein | - |
| LOE08_RS23670 (LOE08_23620) | 88121..88609 | - | 489 | WP_229939238.1 | hypothetical protein | - |
| LOE08_RS23675 (LOE08_23625) | 88613..89422 | - | 810 | WP_224557967.1 | type IV secretion system protein | - |
| LOE08_RS23680 (LOE08_23630) | 89412..90500 | - | 1089 | WP_224557968.1 | lytic transglycosylase domain-containing protein | - |
| LOE08_RS23685 (LOE08_23635) | 90666..92924 | - | 2259 | WP_229940657.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LOE08_RS23690 (LOE08_23640) | 93025..93300 | - | 276 | WP_009819926.1 | VirB3 family type IV secretion system protein | - |
| LOE08_RS23695 (LOE08_23645) | 93324..93608 | - | 285 | WP_224557971.1 | TrbC/VirB2 family protein | - |
| LOE08_RS23700 (LOE08_23650) | 93605..94186 | - | 582 | WP_224557975.1 | lytic transglycosylase domain-containing protein | - |
| LOE08_RS23705 (LOE08_23655) | 94775..95044 | + | 270 | WP_111550073.1 | hypothetical protein | - |
| LOE08_RS23710 (LOE08_23660) | 95130..95783 | + | 654 | WP_121066465.1 | hypothetical protein | - |
| LOE08_RS23715 (LOE08_23665) | 96004..97161 | + | 1158 | WP_121066468.1 | replication initiation protein RepC | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|