MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 149482 bp
Accession: NZ_CP086966 Location: 1..149482 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-15 Replicon: plasmid P3
Accession: NZ_CP086966 Location: 1..149482 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-15 Replicon: plasmid P3
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE11_RS20590 (LOE11_20590) | 1..477 | + | 477 | WP_224557938.1 | MarR family transcriptional regulator | - |
| LOE11_RS20595 (LOE11_20595) | 499..1527 | - | 1029 | WP_224557937.1 | IS30 family transposase ISRssp4 | Transposase |
| LOE11_RS20600 (LOE11_20600) | 1810..2544 | - | 735 | WP_224557936.1 | hypothetical protein | - |
| LOE11_RS20605 (LOE11_20605) | 2642..2923 | - | 282 | WP_224557935.1 | hypothetical protein | - |
| LOE11_RS20610 (LOE11_20610) | 3063..4754 | + | 1692 | WP_224557934.1 | hypothetical protein | - |
| LOE11_RS20615 (LOE11_20615) | 4767..5771 | + | 1005 | WP_224557933.1 | alpha/beta hydrolase family protein | - |
| LOE11_RS20620 (LOE11_20620) | 5845..6048 | - | 204 | WP_229939166.1 | hypothetical protein | - |
| LOE11_RS20625 (LOE11_20625) | 6308..6676 | + | 369 | WP_008327368.1 | hypothetical protein | - |
| LOE11_RS20630 (LOE11_20630) | 6935..7837 | - | 903 | Protein_8 | methyltransferase | - |
| LOE11_RS20635 (LOE11_20635) | 8129..9238 | - | 1110 | WP_224558030.1 | IS110 family transposase ISEc45 | Transposase |
| LOE11_RS20640 (LOE11_20640) | 9340..9663 | - | 324 | Protein_10 | methylase | - |
| LOE11_RS20645 (LOE11_20645) | 9800..10195 | - | 396 | WP_224557987.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| LOE11_RS20650 (LOE11_20650) | 10192..10416 | - | 225 | WP_108693368.1 | transcriptional regulator/antitoxin MazE | - |
| LOE11_RS20655 (LOE11_20655) | 11339..11857 | - | 519 | Protein_13 | type II toxin-antitoxin system YhaV family toxin | - |
| LOE11_RS20660 (LOE11_20660) | 11854..12180 | - | 327 | WP_224557985.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| LOE11_RS20665 (LOE11_20665) | 12304..12957 | - | 654 | WP_224557984.1 | hypothetical protein | - |
| LOE11_RS20670 (LOE11_20670) | 12957..13517 | - | 561 | WP_224557983.1 | regulator | - |
| LOE11_RS20675 (LOE11_20675) | 13591..15573 | - | 1983 | WP_090525078.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE11_RS20680 (LOE11_20680) | 16037..17068 | - | 1032 | WP_224558028.1 | IS110 family transposase ISRhru3 | Transposase |
| LOE11_RS20685 (LOE11_20685) | 17272..17661 | - | 390 | WP_224556806.1 | DUF3768 domain-containing protein | - |
| LOE11_RS20690 (LOE11_20690) | 17766..18689 | - | 924 | WP_224556808.1 | zincin-like metallopeptidase domain-containing protein | - |
| LOE11_RS20695 (LOE11_20695) | 19285..20166 | - | 882 | WP_224556810.1 | formyltetrahydrofolate deformylase | - |
| LOE11_RS20700 (LOE11_20700) | 20269..20823 | - | 555 | WP_224556812.1 | sarcosine oxidase subunit gamma | - |
| LOE11_RS20705 (LOE11_20705) | 20816..23761 | - | 2946 | WP_224556814.1 | sarcosine oxidase subunit alpha family protein | - |
| LOE11_RS20710 (LOE11_20710) | 23758..24054 | - | 297 | WP_028957964.1 | sarcosine oxidase subunit delta | - |
| LOE11_RS20715 (LOE11_20715) | 24065..25315 | - | 1251 | WP_224556816.1 | sarcosine oxidase subunit beta family protein | - |
| LOE11_RS20720 (LOE11_20720) | 25427..26410 | + | 984 | WP_037930317.1 | HTH-type transcriptional activator RhaS | VF |
| LOE11_RS20725 (LOE11_20725) | 26450..27199 | - | 750 | WP_224556817.1 | IclR family transcriptional regulator | - |
| LOE11_RS20730 (LOE11_20730) | 27211..28638 | - | 1428 | WP_224556820.1 | formimidoylglutamate deiminase | - |
| LOE11_RS20735 (LOE11_20735) | 28635..29465 | - | 831 | WP_051694642.1 | N-formylglutamate deformylase | - |
| LOE11_RS20740 (LOE11_20740) | 29593..30570 | + | 978 | WP_037930311.1 | TAXI family TRAP transporter solute-binding subunit | - |
| LOE11_RS20745 (LOE11_20745) | 30570..31076 | + | 507 | WP_051694641.1 | DUF1850 domain-containing protein | - |
| LOE11_RS20750 (LOE11_20750) | 31073..33304 | + | 2232 | WP_051694640.1 | TRAP transporter permease | - |
| LOE11_RS20755 (LOE11_20755) | 33357..34559 | - | 1203 | WP_224556823.1 | CoA transferase | - |
| LOE11_RS20760 (LOE11_20760) | 34647..35609 | - | 963 | WP_224556825.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| LOE11_RS20765 (LOE11_20765) | 35628..37163 | - | 1536 | WP_224556827.1 | tripartite tricarboxylate transporter permease | - |
| LOE11_RS20770 (LOE11_20770) | 37171..37620 | - | 450 | WP_224556829.1 | tripartite tricarboxylate transporter TctB family protein | - |
| LOE11_RS20775 (LOE11_20775) | 37827..38750 | + | 924 | WP_229940879.1 | LysR family transcriptional regulator | - |
| LOE11_RS20780 (LOE11_20780) | 38901..39959 | + | 1059 | WP_224556832.1 | siderophore-interacting protein | - |
| LOE11_RS20785 (LOE11_20785) | 40000..40971 | + | 972 | WP_224556833.1 | ABC transporter substrate-binding protein | - |
| LOE11_RS20790 (LOE11_20790) | 40968..41969 | + | 1002 | WP_229939097.1 | Vitamin B12 import system permease protein BtuC | VF |
| LOE11_RS20795 (LOE11_20795) | 42038..43012 | + | 975 | WP_229939136.1 | Vitamin B12 import system permease protein BtuC | VF |
| LOE11_RS20800 (LOE11_20800) | 43009..43839 | + | 831 | WP_224556836.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LOE11_RS20805 (LOE11_20805) | 44007..46007 | + | 2001 | WP_224556837.1 | TonB-dependent siderophore receptor | - |
| LOE11_RS20810 (LOE11_20810) | 46648..48894 | - | 2247 | WP_224556838.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
| LOE11_RS20815 (LOE11_20815) | 48887..49942 | - | 1056 | WP_224556839.1 | xanthine dehydrogenase family protein subunit M | - |
| LOE11_RS20820 (LOE11_20820) | 49939..50436 | - | 498 | WP_224556840.1 | (2Fe-2S)-binding protein | - |
| LOE11_RS20825 (LOE11_20825) | 50575..51147 | + | 573 | WP_229939138.1 | TetR/AcrR family transcriptional regulator | - |
| LOE11_RS20830 (LOE11_20830) | 51564..51854 | + | 291 | WP_224556843.1 | hypothetical protein | - |
| LOE11_RS20835 (LOE11_20835) | 52272..53606 | - | 1335 | WP_224556846.1 | type II toxin-antitoxin system HipA family toxin | - |
| LOE11_RS20840 (LOE11_20840) | 53606..53857 | - | 252 | WP_224556848.1 | helix-turn-helix domain-containing protein | - |
| LOE11_RS20845 (LOE11_20845) | 54330..54803 | + | 474 | WP_224556849.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| LOE11_RS20850 (LOE11_20850) | 54989..55747 | + | 759 | WP_224556852.1 | enoyl-CoA hydratase | - |
| LOE11_RS20855 (LOE11_20855) | 55835..56386 | + | 552 | WP_224556854.1 | Carnitine operon protein CaiE | VF |
| LOE11_RS20860 (LOE11_20860) | 56536..58758 | - | 2223 | WP_224556857.1 | PAS-domain containing protein | - |
| LOE11_RS20865 (LOE11_20865) | 58755..59801 | - | 1047 | WP_229939099.1 | FIST N-terminal domain-containing protein | - |
| LOE11_RS20870 (LOE11_20870) | 59988..60689 | - | 702 | WP_224556861.1 | response regulator transcription factor | - |
| LOE11_RS20875 (LOE11_20875) | 60800..62575 | - | 1776 | WP_224556863.1 | PQQ-dependent methanol/ethanol family dehydrogenase | - |
| LOE11_RS20880 (LOE11_20880) | 62763..63740 | + | 978 | WP_224556865.1 | ABC transporter substrate-binding protein | - |
| LOE11_RS20885 (LOE11_20885) | 63746..64420 | + | 675 | WP_224556995.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LOE11_RS20890 (LOE11_20890) | 64360..64896 | - | 537 | WP_224556869.1 | hypothetical protein | VF |
| LOE11_RS20895 (LOE11_20895) | 64931..65722 | - | 792 | WP_224556871.1 | ABC transporter permease | - |
| LOE11_RS20900 (LOE11_20900) | 65719..66435 | - | 717 | WP_224556875.1 | Vitamin B12 import ATP-binding protein BtuD | VF |
| LOE11_RS20905 (LOE11_20905) | 66432..66881 | - | 450 | WP_224556878.1 | hypothetical protein | - |
| LOE11_RS20910 (LOE11_20910) | 66899..67858 | - | 960 | WP_224556880.1 | YVTN family beta-propeller repeat protein | - |
| LOE11_RS20915 (LOE11_20915) | 67855..68985 | - | 1131 | WP_224556882.1 | ABC transporter substrate-binding protein | - |
| LOE11_RS20920 (LOE11_20920) | 69175..69873 | + | 699 | WP_224556885.1 | cytochrome c-550 PedF | - |
| LOE11_RS20925 (LOE11_20925) | 69908..70780 | + | 873 | WP_224556997.1 | transporter substrate-binding domain-containing protein | - |
| LOE11_RS20930 (LOE11_20930) | 70930..71415 | + | 486 | WP_224556887.1 | (2Fe-2S)-binding protein | - |
| LOE11_RS20935 (LOE11_20935) | 71437..73809 | + | 2373 | WP_224556889.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
| LOE11_RS20940 (LOE11_20940) | 73820..74602 | + | 783 | WP_224556891.1 | xanthine dehydrogenase family protein subunit M | - |
| LOE11_RS20945 (LOE11_20945) | 74667..75539 | - | 873 | WP_224556893.1 | FAD:protein FMN transferase | - |
| LOE11_RS20950 (LOE11_20950) | 75536..77617 | - | 2082 | WP_224556895.1 | 4Fe-4S binding protein | - |
| LOE11_RS20955 (LOE11_20955) | 77741..78517 | + | 777 | WP_224556896.1 | ABC transporter permease | - |
| LOE11_RS20960 (LOE11_20960) | 78514..79200 | - | 687 | WP_224556898.1 | vWA domain-containing protein | - |
| LOE11_RS20965 (LOE11_20965) | 79216..80301 | - | 1086 | WP_224556900.1 | pyrroloquinoline quinone biosynthesis protein PqqE | - |
| LOE11_RS20970 (LOE11_20970) | 80285..80563 | - | 279 | WP_224556902.1 | pyrroloquinoline quinone biosynthesis peptide chaperone PqqD | - |
| LOE11_RS20975 (LOE11_20975) | 80563..81306 | - | 744 | WP_224556903.1 | pyrroloquinoline-quinone synthase PqqC | - |
| LOE11_RS20980 (LOE11_20980) | 81303..82190 | - | 888 | WP_224556905.1 | pyrroloquinoline quinone biosynthesis protein PqqB | - |
| LOE11_RS20985 (LOE11_20985) | 82204..82311 | - | 108 | WP_224556908.1 | pyrroloquinoline quinone precursor peptide PqqA | - |
| LOE11_RS20990 (LOE11_20990) | 82482..82877 | + | 396 | WP_224556911.1 | cytochrome c family protein | - |
| LOE11_RS20995 (LOE11_20995) | 82891..83412 | + | 522 | WP_224556913.1 | carbon monoxide dehydrogenase subunit G | - |
| LOE11_RS21000 (LOE11_21000) | 83714..84601 | - | 888 | WP_224556916.1 | LysR family transcriptional regulator | - |
| LOE11_RS21005 (LOE11_21005) | 84702..85313 | + | 612 | WP_224556921.1 | glutathione transferase GstA | - |
| LOE11_RS21010 (LOE11_21010) | 85310..85690 | + | 381 | WP_224556923.1 | nuclear transport factor 2 family protein | - |
| LOE11_RS21015 (LOE11_21015) | 85694..85912 | + | 219 | WP_224556926.1 | 4-oxalocrotonate tautomerase family protein | - |
| LOE11_RS21020 (LOE11_21020) | 86293..87774 | - | 1482 | WP_224556929.1 | sodium:solute symporter family protein | - |
| LOE11_RS21025 (LOE11_21025) | 87771..87956 | - | 186 | WP_224556932.1 | hypothetical protein | - |
| LOE11_RS21030 (LOE11_21030) | 88073..88696 | - | 624 | WP_224556935.1 | isochorismatase family protein | - |
| LOE11_RS21035 (LOE11_21035) | 88718..89749 | - | 1032 | WP_224556938.1 | leucyl aminopeptidase | - |
| LOE11_RS21040 (LOE11_21040) | 89777..90559 | - | 783 | WP_224556941.1 | alpha/beta hydrolase | - |
| LOE11_RS21045 (LOE11_21045) | 90571..91272 | - | 702 | WP_224557001.1 | maleate isomerase | - |
| LOE11_RS21050 (LOE11_21050) | 91433..92101 | - | 669 | WP_224556944.1 | HTH-type transcriptional regulator BetI | VF |
| LOE11_RS21055 (LOE11_21055) | 92109..92573 | - | 465 | WP_224556946.1 | MarR family transcriptional regulator | - |
| LOE11_RS21060 (LOE11_21060) | 92869..93381 | + | 513 | WP_224556948.1 | (2Fe-2S)-binding protein | - |
| LOE11_RS21065 (LOE11_21065) | 93378..96791 | + | 3414 | WP_224556949.1 | molybdopterin-dependent oxidoreductase | - |
| LOE11_RS21070 (LOE11_21070) | 96985..98118 | + | 1134 | WP_224557003.1 | FAD-dependent monooxygenase | - |
| LOE11_RS21075 (LOE11_21075) | 98106..98242 | - | 137 | Protein_97 | IS481 family transposase | - |
| LOE11_RS21080 (LOE11_21080) | 98294..99961 | - | 1668 | WP_224556950.1 | sulfatase-like hydrolase/transferase | - |
| LOE11_RS21085 (LOE11_21085) | 100024..100380 | - | 357 | WP_224556951.1 | hypothetical protein | - |
| LOE11_RS21090 (LOE11_21090) | 100622..101113 | - | 492 | WP_224557005.1 | 3-keto-5-aminohexanoate cleavage protein | - |
| LOE11_RS21095 (LOE11_21095) | 101279..102223 | + | 945 | Protein_101 | IS110 family transposase ISWpi13 | Transposase |
| LOE11_RS21100 (LOE11_21100) | 102224..103135 | + | 912 | Protein_102 | IS3 family transposase ISXau3 | Transposase |
| LOE11_RS21105 (LOE11_21105) | 103767..104018 | + | 252 | WP_224556953.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| LOE11_RS21110 (LOE11_21110) | 104015..104281 | + | 267 | WP_224556955.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| LOE11_RS21115 (LOE11_21115) | 104342..105160 | - | 819 | WP_229940646.1 | hypothetical protein | - |
| LOE11_RS21120 (LOE11_21120) | 105251..105954 | + | 704 | Protein_106 | IS6 family transposase ISRH1 | Transposase |
| LOE11_RS21125 (LOE11_21125) | 106172..107053 | - | 882 | WP_224556958.1 | zinc-binding dehydrogenase | - |
| LOE11_RS21130 (LOE11_21130) | 108883..109938 | - | 1056 | WP_224556960.1 | plasmid replication protein RepC | - |
| LOE11_RS21135 (LOE11_21135) | 110177..111148 | - | 972 | WP_224556962.1 | plasmid partitioning protein RepB | - |
| LOE11_RS21140 (LOE11_21140) | 111148..112347 | - | 1200 | WP_037930394.1 | hypothetical protein | VF |
| LOE11_RS21145 (LOE11_21145) | 112830..112988 | - | 159 | Protein_111 | short-chain dehydrogenase | - |
| LOE11_RS21150 (LOE11_21150) | 113076..114173 | - | 1098 | WP_229939103.1 | glycoside hydrolase family 88 protein | - |
| LOE11_RS21155 (LOE11_21155) | 114205..115272 | - | 1068 | WP_224556967.1 | TRAP transporter substrate-binding protein | - |
| LOE11_RS21160 (LOE11_21160) | 115580..116080 | + | 501 | WP_224556969.1 | TRAP transporter small permease | - |
| LOE11_RS21165 (LOE11_21165) | 116103..117410 | + | 1308 | WP_229939144.1 | TRAP transporter large permease | - |
| LOE11_RS21170 (LOE11_21170) | 117424..118164 | + | 741 | WP_224556975.1 | 3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase | VF |
| LOE11_RS21175 (LOE11_21175) | 118169..119185 | - | 1017 | WP_224556977.1 | LacI family DNA-binding transcriptional regulator | - |
| LOE11_RS21180 (LOE11_21180) | 119428..120264 | + | 837 | WP_224556979.1 | 5-dehydro-4-deoxy-D-glucuronate isomerase | - |
| LOE11_RS21185 (LOE11_21185) | 120268..122727 | + | 2460 | WP_224556981.1 | hypothetical protein | - |
| LOE11_RS21190 (LOE11_21190) | 123205..123795 | + | 591 | WP_229939111.1 | NAD(P)H-dependent oxidoreductase | - |
| LOE11_RS23055 | 123887..124009 | + | 123 | WP_269140185.1 | hypothetical protein | - |
| LOE11_RS21195 (LOE11_21195) | 124512..125396 | + | 885 | WP_224556983.1 | DUF1403 family protein | - |
| LOE11_RS21200 (LOE11_21200) | 125399..126013 | + | 615 | WP_224556984.1 | SMC-Scp complex subunit ScpB | - |
| LOE11_RS21205 (LOE11_21205) | 126114..126329 | + | 216 | WP_224556986.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| LOE11_RS21210 (LOE11_21210) | 126356..126859 | + | 504 | WP_224556988.1 | type II toxin-antitoxin system VapC family toxin | - |
| LOE11_RS21215 (LOE11_21215) | 126753..127465 | + | 713 | Protein_126 | IS6 family transposase | - |
| LOE11_RS21220 (LOE11_21220) | 127751..127924 | - | 174 | WP_229939113.1 | DDE-type integrase/transposase/recombinase | - |
| LOE11_RS21225 (LOE11_21225) | 129699..130088 | - | 390 | WP_224556990.1 | helix-turn-helix domain-containing protein | - |
| LOE11_RS21230 (LOE11_21230) | 130509..130613 | + | 105 | WP_229939115.1 | hypothetical protein | - |
| LOE11_RS21235 | 130613..130876 | + | 264 | WP_229940645.1 | hypothetical protein | - |
| LOE11_RS21240 (LOE11_21240) | 131140..132024 | + | 885 | WP_224556992.1 | DUF1403 family protein | - |
| LOE11_RS21245 (LOE11_21245) | 132027..132620 | + | 594 | WP_224556993.1 | SMC-Scp complex subunit ScpB | - |
| LOE11_RS21250 (LOE11_21250) | 132906..133184 | + | 279 | WP_229939064.1 | IS66 family transposase ISSme3 | Transposase |
| LOE11_RS21255 (LOE11_21255) | 133181..133528 | + | 348 | WP_224558021.1 | IS66 family transposase ISAzs18 | Transposase |
| LOE11_RS21260 (LOE11_21260) | 133607..135133 | + | 1527 | WP_224558022.1 | IS66 family transposase ISAzs18 | Transposase |
| LOE11_RS21265 (LOE11_21265) | 135348..135455 | + | 108 | Protein_136 | transposase | - |
| LOE11_RS21270 (LOE11_21270) | 137093..137647 | + | 555 | WP_224558005.1 | hypothetical protein | - |
| LOE11_RS21275 (LOE11_21275) | 138203..138391 | + | 189 | WP_224558006.1 | Flp family type IVb pilin | - |
| LOE11_RS21280 (LOE11_21280) | 138437..139357 | + | 921 | WP_229940643.1 | Flp pilus assembly protein CpaB | - |
| LOE11_RS21285 (LOE11_21285) | 139379..140734 | + | 1356 | WP_224557979.1 | hypothetical protein | VF |
| LOE11_RS21290 (LOE11_21290) | 140737..141276 | + | 540 | WP_224557980.1 | CpaD family pilus assembly protein | - |
| LOE11_RS21295 (LOE11_21295) | 141298..142539 | + | 1242 | WP_224557981.1 | hypothetical protein | - |
| LOE11_RS21300 (LOE11_21300) | 142532..144076 | + | 1545 | WP_229940584.1 | hypothetical protein | VF |
| LOE11_RS21305 (LOE11_21305) | 144073..145041 | + | 969 | WP_224557982.1 | hypothetical protein | VF |
| LOE11_RS21310 (LOE11_21310) | 145043..145993 | + | 951 | WP_229939089.1 | type II secretion system F family protein | - |
| LOE11_RS21315 (LOE11_21315) | 145990..146412 | + | 423 | WP_224557940.1 | pilus assembly protein | - |
| LOE11_RS21320 (LOE11_21320) | 146402..148177 | + | 1776 | WP_224557939.1 | pilus assembly protein TadG-related protein | - |
| LOE11_RS21325 (LOE11_21325) | 148260..149030 | + | 771 | WP_229942684.1 | Beta-barrel assembly-enhancing protease | VF |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|