MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 97185 bp
Accession: NZ_CP086960 Location: 1..97185 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-27 Replicon: plasmid P6
Accession: NZ_CP086960 Location: 1..97185 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-27 Replicon: plasmid P6
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE13_RS22395 (LOE13_22380) | 65..1222 | - | 1158 | WP_229939233.1 | replication initiation protein RepC | - |
| LOE13_RS22400 (LOE13_22385) | 1443..2096 | - | 654 | WP_121066465.1 | hypothetical protein | - |
| LOE13_RS22405 (LOE13_22390) | 2182..2451 | - | 270 | WP_111550073.1 | hypothetical protein | - |
| LOE13_RS22410 (LOE13_22395) | 3040..3621 | + | 582 | WP_224557975.1 | lytic transglycosylase domain-containing protein | - |
| LOE13_RS22415 (LOE13_22400) | 3618..3902 | + | 285 | WP_224557971.1 | hypothetical protein | VF |
| LOE13_RS22420 (LOE13_22405) | 3926..4201 | + | 276 | WP_009819926.1 | VirB3 family type IV secretion system protein | - |
| LOE13_RS22425 (LOE13_22410) | 4302..6560 | + | 2259 | WP_229940657.1 | type IV secretion system DNA-binding domain-containing protein | - |
| LOE13_RS22430 (LOE13_22415) | 6726..7814 | + | 1089 | WP_224557968.1 | lytic transglycosylase domain-containing protein | - |
| LOE13_RS22435 (LOE13_22420) | 7804..8613 | + | 810 | WP_224557967.1 | type IV secretion system protein | - |
| LOE13_RS22440 (LOE13_22425) | 8617..9105 | + | 489 | WP_229939238.1 | hypothetical protein | - |
| LOE13_RS22445 (LOE13_22430) | 9105..10106 | + | 1002 | WP_224557930.1 | type IV secretion system protein | - |
| LOE13_RS22450 (LOE13_22435) | 10109..10753 | + | 645 | WP_224557929.1 | Type IV secretion system protein PtlE | VF |
| LOE13_RS22455 (LOE13_22440) | 10757..11488 | + | 732 | WP_224557928.1 | TrbG/VirB9 family P-type conjugative transfer protein | - |
| LOE13_RS22460 (LOE13_22445) | 11491..12948 | + | 1458 | WP_224557927.1 | Type IV secretion system protein PtlG | VF |
| LOE13_RS22465 (LOE13_22450) | 13059..14048 | + | 990 | WP_224557926.1 | Type IV secretion system protein VirB11 | VF |
| LOE13_RS22470 (LOE13_22455) | 14196..14444 | + | 249 | WP_229939240.1 | plasmid stabilization protein | Antitoxin Detail |
| LOE13_RS22475 (LOE13_22460) | 14448..14870 | + | 423 | WP_224557924.1 | type II toxin-antitoxin system VapC family toxin | Toxin Detail |
| LOE13_RS22480 (LOE13_22465) | 14867..17617 | + | 2751 | WP_224557923.1 | lactate dehydrogenase | - |
| LOE13_RS22485 (LOE13_22470) | 17614..18672 | + | 1059 | WP_224557922.1 | HEPN domain-containing protein | - |
| LOE13_RS22490 (LOE13_22475) | 18834..20306 | + | 1473 | WP_224557920.1 | ATP-binding protein | - |
| LOE13_RS22495 (LOE13_22480) | 20482..20808 | + | 327 | Protein_20 | DEAD/DEAH box helicase family protein | - |
| LOE13_RS22500 (LOE13_22485) | 20869..21531 | + | 663 | WP_224558010.1 | plasmid pRiA4b ORF-3 family protein | - |
| LOE13_RS22505 (LOE13_22490) | 21650..22231 | + | 582 | WP_224558009.1 | Tn3 family transposase TnpR_ISYps3 | Transposase |
| LOE13_RS22510 (LOE13_22495) | 22258..23643 | + | 1386 | WP_224558008.1 | ISKra4 family transposase ISUnCu7 | Transposase |
| LOE13_RS22515 (LOE13_22500) | 23698..23895 | + | 198 | WP_224557951.1 | hypothetical protein | - |
| LOE13_RS22525 (LOE13_22510) | 25461..26471 | - | 1011 | WP_224557953.1 | NAD(P)-dependent alcohol dehydrogenase | - |
| LOE13_RS22530 (LOE13_22515) | 26570..30037 | - | 3468 | WP_224557954.1 | indolepyruvate ferredoxin oxidoreductase family protein | - |
| LOE13_RS22535 (LOE13_22520) | 30101..30631 | + | 531 | WP_224557955.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| LOE13_RS22540 (LOE13_22525) | 30650..31450 | - | 801 | WP_284145095.1 | zinc-binding dehydrogenase | - |
| LOE13_RS22550 (LOE13_22535) | 33426..34451 | + | 1026 | WP_229942672.1 | lysylphosphatidylglycerol synthase transmembrane domain-containing protein | - |
| LOE13_RS22555 (LOE13_22540) | 34448..36676 | + | 2229 | WP_224557893.1 | glycosyltransferase | - |
| LOE13_RS22560 (LOE13_22545) | 36960..37988 | + | 1029 | WP_224557892.1 | IS110 family transposase ISPko7 | Transposase |
| LOE13_RS22565 (LOE13_22550) | 38308..39232 | + | 925 | Protein_34 | IS5 family transposase ISUnCu15 | Transposase |
| LOE13_RS22570 (LOE13_22555) | 39444..39938 | - | 495 | WP_224557890.1 | hypothetical protein | - |
| LOE13_RS22575 (LOE13_22560) | 39977..42277 | - | 2301 | WP_224557889.1 | VWA domain-containing protein | - |
| LOE13_RS22580 (LOE13_22565) | 42274..43245 | - | 972 | WP_224557888.1 | hypothetical protein | - |
| LOE13_RS22585 (LOE13_22570) | 43269..43793 | - | 525 | WP_224557886.1 | hypothetical protein | - |
| LOE13_RS22590 (LOE13_22575) | 43790..44317 | - | 528 | WP_224557885.1 | hypothetical protein | - |
| LOE13_RS22595 (LOE13_22580) | 44314..44793 | - | 480 | WP_224557884.1 | hypothetical protein | - |
| LOE13_RS22600 (LOE13_22585) | 44802..45374 | - | 573 | WP_224557883.1 | hypothetical protein | - |
| LOE13_RS22605 (LOE13_22590) | 45376..45927 | - | 552 | WP_224557882.1 | hypothetical protein | - |
| LOE13_RS22610 (LOE13_22595) | 46064..46546 | + | 483 | WP_224557881.1 | molybdopterin-dependent oxidoreductase | - |
| LOE13_RS22615 (LOE13_22600) | 46543..47880 | + | 1338 | WP_224557880.1 | HAMP domain-containing sensor histidine kinase | - |
| LOE13_RS22620 (LOE13_22605) | 47877..48842 | + | 966 | WP_224557879.1 | Transcriptional regulatory protein AfsQ1 | VF |
| LOE13_RS22625 (LOE13_22610) | 48917..49342 | - | 426 | WP_224557878.1 | hypothetical protein | - |
| LOE13_RS22630 (LOE13_22615) | 49468..50487 | + | 1020 | WP_224557877.1 | IS110 family transposase ISAzs4 | Transposase |
| LOE13_RS22635 (LOE13_22620) | 50842..51702 | - | 861 | WP_224557876.1 | LysR family transcriptional regulator | - |
| LOE13_RS22640 (LOE13_22625) | 51859..52578 | + | 720 | WP_229944135.1 | hypothetical protein | - |
| LOE13_RS22645 (LOE13_22630) | 52779..53198 | - | 420 | WP_229940658.1 | hypothetical protein | - |
| LOE13_RS22650 (LOE13_22635) | 53259..53889 | + | 631 | Protein_51 | IS3 family transposase ISPko4 | Transposase |
| LOE13_RS22655 (LOE13_22640) | 53955..54712 | + | 758 | WP_156127956.1 | IS5 family transposase IS1248A | Transposase |
| LOE13_RS22660 (LOE13_22645) | 54779..55696 | - | 918 | WP_043755117.1 | CoA ester lyase | - |
| LOE13_RS22665 (LOE13_22650) | 55706..56935 | - | 1230 | WP_043755120.1 | CoA transferase | - |
| LOE13_RS22670 (LOE13_22655) | 56932..57417 | - | 486 | WP_043755138.1 | MaoC family dehydratase | - |
| LOE13_RS22675 (LOE13_22660) | 57428..58663 | - | 1236 | WP_043755124.1 | acyl-CoA dehydrogenase family protein | - |
| LOE13_RS22680 (LOE13_22665) | 58660..59154 | - | 495 | WP_043755128.1 | MaoC family dehydratase | - |
| LOE13_RS22685 (LOE13_22670) | 59151..60494 | - | 1344 | WP_224557915.1 | MmgE/PrpD family protein | - |
| LOE13_RS22690 (LOE13_22675) | 60484..61764 | - | 1281 | WP_052418558.1 | TRAP transporter large permease | - |
| LOE13_RS22695 (LOE13_22680) | 61764..62309 | - | 546 | WP_081979733.1 | TRAP transporter small permease | - |
| LOE13_RS22700 (LOE13_22685) | 62375..63373 | - | 999 | WP_052418559.1 | TRAP transporter substrate-binding protein DctP | - |
| LOE13_RS22705 (LOE13_22690) | 63522..64442 | - | 921 | WP_043755133.1 | HTH-type transcriptional regulator GltC | VF |
| LOE13_RS22710 (LOE13_22695) | 64473..65192 | - | 720 | WP_229939243.1 | LysR substrate-binding domain-containing protein | - |
| LOE13_RS22715 (LOE13_22700) | 65133..65579 | + | 447 | Protein_64 | IS6 family transposase | - |
| LOE13_RS22720 (LOE13_22705) | 65556..68225 | - | 2670 | WP_229939218.1 | strawberry notch family protein | - |
| LOE13_RS22725 (LOE13_22710) | 68451..69560 | - | 1110 | WP_224558030.1 | IS110 family transposase ISEc45 | Transposase |
| LOE13_RS22730 (LOE13_22715) | 69662..70042 | - | 381 | Protein_67 | hypothetical protein | - |
| LOE13_RS22735 (LOE13_22720) | 70219..70512 | + | 294 | WP_067297285.1 | hypothetical protein | - |
| LOE13_RS22740 (LOE13_22725) | 71035..71736 | - | 702 | WP_067297288.1 | RES family NAD+ phosphorylase | - |
| LOE13_RS22745 (LOE13_22730) | 71733..72134 | - | 402 | WP_067297291.1 | MbcA/ParS/Xre antitoxin family protein | - |
| LOE13_RS22750 (LOE13_22735) | 72193..72837 | - | 645 | WP_121066445.1 | antitoxin of toxin-antitoxin stability system | - |
| LOE13_RS22755 (LOE13_22740) | 72830..73249 | - | 420 | WP_067297244.1 | hypothetical protein | - |
| LOE13_RS22760 (LOE13_22745) | 73325..73522 | - | 198 | WP_047998245.1 | hypothetical protein | - |
| LOE13_RS22765 (LOE13_22750) | 73524..73901 | - | 378 | WP_114276348.1 | hypothetical protein | - |
| LOE13_RS22770 (LOE13_22755) | 73912..74403 | - | 492 | WP_067297141.1 | hypothetical protein | - |
| LOE13_RS22775 (LOE13_22760) | 74507..75025 | - | 519 | WP_114276373.1 | DNA repair protein RadC | - |
| LOE13_RS22780 (LOE13_22765) | 75135..75575 | - | 441 | WP_114276349.1 | DNA repair protein RadC | - |
| LOE13_RS22785 (LOE13_22770) | 75703..76902 | - | 1200 | WP_121066443.1 | DUF932 domain-containing protein | - |
| LOE13_RS22790 (LOE13_22775) | 77040..77945 | - | 906 | WP_114276002.1 | hypothetical protein | - |
| LOE13_RS22795 (LOE13_22780) | 77985..78581 | + | 597 | WP_037954955.1 | hypothetical protein | - |
| LOE13_RS22800 (LOE13_22785) | 78636..79040 | - | 405 | WP_009827211.1 | single-stranded DNA-binding protein | - |
| LOE13_RS22805 (LOE13_22790) | 79460..79747 | + | 288 | WP_009827212.1 | H-NS histone family protein | - |
| LOE13_RS22810 (LOE13_22795) | 79757..81202 | - | 1446 | WP_114276004.1 | hypothetical protein | - |
| LOE13_RS22815 (LOE13_22800) | 81441..81605 | - | 165 | WP_007803240.1 | hypothetical protein | - |
| LOE13_RS22820 (LOE13_22805) | 81989..82462 | - | 474 | WP_114276003.1 | hypothetical protein | - |
| LOE13_RS22825 (LOE13_22810) | 82562..84739 | - | 2178 | WP_224556256.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE13_RS22830 (LOE13_22815) | 85030..86073 | - | 1044 | WP_114276417.1 | IS5 family transposase ISPmar3 | Transposase |
| LOE13_RS22835 (LOE13_22820) | 86139..87296 | - | 1158 | WP_121066480.1 | helix-turn-helix domain-containing protein | - |
| LOE13_RS22840 (LOE13_22825) | 87536..88495 | - | 960 | WP_121066477.1 | plasmid partitioning protein RepB | - |
| LOE13_RS22845 (LOE13_22830) | 88485..89687 | - | 1203 | WP_089852475.1 | Sporulation initiation inhibitor protein Soj | VF |
| LOE13_RS22850 (LOE13_22835) | 90129..91016 | - | 888 | WP_114273238.1 | Tn3 family transposase ISPsy42 | Transposase |
| LOE13_RS22855 (LOE13_22840) | 91221..94559 | + | 3339 | WP_224556255.1 | DEAD/DEAH box helicase | - |
| LOE13_RS22860 (LOE13_22845) | 94663..95757 | - | 1095 | WP_224556253.1 | tyrosine-type recombinase/integrase | - |
| LOE13_RS22865 (LOE13_22850) | 95916..96800 | + | 885 | WP_229939227.1 | DUF1403 family protein | - |
| LOE13_RS22870 (LOE13_22855) | 96804..97185 | + | 382 | WP_229944136.1 | SMC-Scp complex subunit ScpB | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|