MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 82230 bp
Accession: NZ_CP086958 Location: 1..82230 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-27 Replicon: plasmid P4
Accession: NZ_CP086958 Location: 1..82230 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-27 Replicon: plasmid P4
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE13_RS21100 (LOE13_21090) | 373..1896 | - | 1524 | WP_224557578.1 | aldehyde dehydrogenase family protein | - |
| LOE13_RS21105 (LOE13_21095) | 2026..2982 | - | 957 | WP_224557576.1 | helix-turn-helix domain-containing protein | - |
| LOE13_RS21110 (LOE13_21100) | 3391..4257 | - | 867 | WP_224557575.1 | ECF RNA polymerase sigma factor SigJ | VF |
| LOE13_RS21115 (LOE13_21105) | 4269..4571 | - | 303 | WP_224557574.1 | antibiotic biosynthesis monooxygenase | - |
| LOE13_RS21120 (LOE13_21110) | 4661..5593 | - | 933 | WP_224557573.1 | LysR family transcriptional regulator | - |
| LOE13_RS21125 (LOE13_21115) | 5762..6826 | + | 1065 | WP_224557572.1 | sugar ABC transporter substrate-binding protein | - |
| LOE13_RS21130 (LOE13_21120) | 6908..8428 | + | 1521 | WP_224557571.1 | Xylose import ATP-binding protein XylG | VF |
| LOE13_RS21135 (LOE13_21125) | 8441..9637 | + | 1197 | WP_224557570.1 | sugar ABC transporter permease | - |
| LOE13_RS21140 (LOE13_21130) | 9650..11392 | + | 1743 | WP_224557569.1 | L-arabinonate dehydratase | - |
| LOE13_RS21145 (LOE13_21135) | 11392..12318 | + | 927 | WP_224557568.1 | Gfo/Idh/MocA family oxidoreductase | - |
| LOE13_RS21150 (LOE13_21140) | 12355..13272 | + | 918 | WP_224557566.1 | dihydrodipicolinate synthase family protein | - |
| LOE13_RS21155 (LOE13_21145) | 13361..13921 | + | 561 | WP_224557565.1 | dTDP-4-dehydrorhamnose 3,5-epimerase | - |
| LOE13_RS21160 (LOE13_21150) | 13918..14973 | + | 1056 | WP_224557564.1 | dTDP-glucose 4,6-dehydratase 2 | VF |
| LOE13_RS21165 (LOE13_21155) | 14970..15848 | + | 879 | WP_224557563.1 | Glucose-1-phosphate thymidylyltransferase 1 | VF |
| LOE13_RS21170 (LOE13_21160) | 16139..16834 | + | 696 | WP_224557562.1 | PRC-barrel domain-containing protein | - |
| LOE13_RS21175 (LOE13_21165) | 17033..18211 | - | 1179 | WP_224557561.1 | LarC family nickel insertion protein | - |
| LOE13_RS21180 (LOE13_21170) | 18211..19527 | - | 1317 | WP_224557560.1 | lactate racemase domain-containing protein | - |
| LOE13_RS21185 (LOE13_21175) | 19544..21091 | - | 1548 | WP_224557559.1 | altronate dehydratase family protein | - |
| LOE13_RS21190 (LOE13_21180) | 21216..21953 | + | 738 | WP_229940771.1 | GntR family transcriptional regulator | - |
| LOE13_RS21195 (LOE13_21185) | 22422..22697 | - | 276 | WP_224557555.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin Detail |
| LOE13_RS21200 (LOE13_21190) | 22690..22983 | - | 294 | WP_224557554.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin Detail |
| LOE13_RS21205 (LOE13_21195) | 23054..23959 | - | 906 | WP_224557552.1 | dihydrodipicolinate synthase family protein | - |
| LOE13_RS21210 (LOE13_21200) | 23970..25709 | - | 1740 | WP_224557550.1 | L-arabinonate dehydratase | - |
| LOE13_RS21215 (LOE13_21205) | 25971..27506 | + | 1536 | WP_224557548.1 | aldehyde dehydrogenase (NADP(+)) | - |
| LOE13_RS21220 (LOE13_21210) | 27512..28486 | + | 975 | WP_224557547.1 | 2-hydroxyacid dehydrogenase | - |
| LOE13_RS21225 (LOE13_21215) | 28550..29764 | - | 1215 | WP_224557545.1 | MFS transporter | - |
| LOE13_RS21230 (LOE13_21220) | 29866..30504 | - | 639 | WP_224557543.1 | TetR/AcrR family transcriptional regulator | - |
| LOE13_RS21235 (LOE13_21225) | 30564..30992 | + | 429 | WP_224557541.1 | DUF4345 domain-containing protein | - |
| LOE13_RS21240 (LOE13_21230) | 31223..32152 | - | 930 | WP_224557539.1 | alpha/beta hydrolase | - |
| LOE13_RS21245 (LOE13_21235) | 32139..32444 | - | 306 | WP_037930066.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| LOE13_RS21250 (LOE13_21240) | 32573..32806 | + | 234 | WP_224557538.1 | hypothetical protein | - |
| LOE13_RS21255 (LOE13_21245) | 33145..33963 | + | 819 | Protein_32 | GTP-binding protein | - |
| LOE13_RS21260 (LOE13_21250) | 34042..34629 | - | 588 | WP_101754700.1 | Tn3 family transposase TnpR_ISRsp12 | Transposase |
| LOE13_RS21265 (LOE13_21255) | 34795..37685 | + | 2891 | Protein_34 | Tn3 family transposase TnpA_ISRsp12 | Transposase |
| LOE13_RS21270 (LOE13_21260) | 37794..38903 | + | 1110 | WP_229939302.1 | ABC transporter substrate-binding protein | - |
| LOE13_RS21275 (LOE13_21265) | 38900..39829 | + | 930 | WP_224557611.1 | ABC transporter permease | - |
| LOE13_RS21280 (LOE13_21270) | 39873..40637 | + | 765 | WP_229939311.1 | ABC transporter permease subunit | - |
| LOE13_RS21285 (LOE13_21275) | 40634..42082 | + | 1449 | WP_224557609.1 | putative ABC transporter ATP-binding protein YejF | VF |
| LOE13_RS21290 (LOE13_21280) | 42113..42430 | - | 318 | WP_224557608.1 | NIPSNAP family protein | - |
| LOE13_RS21295 (LOE13_21285) | 42440..43156 | - | 717 | WP_037930086.1 | FadR/GntR family transcriptional regulator | - |
| LOE13_RS21300 (LOE13_21290) | 43172..43867 | - | 696 | WP_224557607.1 | nickel pincer cofactor biosynthesis protein LarB | - |
| LOE13_RS21305 (LOE13_21295) | 43860..44645 | - | 786 | WP_224557605.1 | adenine nucleotide alpha hydrolase | - |
| LOE13_RS21310 (LOE13_21300) | 44642..45394 | - | 753 | WP_224557604.1 | FCD domain-containing protein | - |
| LOE13_RS21315 (LOE13_21305) | 45661..46623 | + | 963 | WP_224557603.1 | TAXI family TRAP transporter solute-binding subunit | - |
| LOE13_RS21320 (LOE13_21310) | 46709..48583 | + | 1875 | WP_051694623.1 | TRAP transporter permease | - |
| LOE13_RS21325 (LOE13_21315) | 48605..50290 | + | 1686 | WP_224557602.1 | thiamine pyrophosphate-binding protein | - |
| LOE13_RS21330 (LOE13_21320) | 50316..51758 | + | 1443 | WP_224557601.1 | FAD-binding oxidoreductase | - |
| LOE13_RS21335 (LOE13_21325) | 51782..52411 | + | 630 | WP_224557600.1 | glutathione S-transferase N-terminal domain-containing protein | - |
| LOE13_RS21340 (LOE13_21330) | 52827..54500 | - | 1674 | WP_224557599.1 | CHAT domain-containing protein | - |
| LOE13_RS21345 (LOE13_21335) | 54509..55216 | - | 708 | WP_143186815.1 | hypothetical protein | - |
| LOE13_RS21350 (LOE13_21340) | 55355..58081 | - | 2727 | WP_224557598.1 | hypothetical protein | - |
| LOE13_RS21355 (LOE13_21345) | 58051..59097 | - | 1047 | WP_081855458.1 | serine protease | - |
| LOE13_RS21360 (LOE13_21350) | 59103..61076 | - | 1974 | WP_229940665.1 | caspase family protein | - |
| LOE13_RS21365 (LOE13_21355) | 61237..61800 | - | 564 | WP_224557596.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| LOE13_RS21370 (LOE13_21360) | 62088..62675 | + | 588 | WP_037930134.1 | cbb3-type cytochrome c oxidase subunit I | - |
| LOE13_RS21375 (LOE13_21365) | 62833..64287 | - | 1455 | WP_224557595.1 | patatin-like phospholipase family protein | - |
| LOE13_RS21380 (LOE13_21370) | 64329..65654 | - | 1326 | WP_224557594.1 | Sensor protein RstB | VF |
| LOE13_RS21385 (LOE13_21375) | 65651..66346 | - | 696 | WP_224557593.1 | Transcriptional regulatory protein CusR | VF |
| LOE13_RS21390 (LOE13_21380) | 66339..67589 | - | 1251 | WP_229940663.1 | trypsin-like peptidase domain-containing protein | - |
| LOE13_RS21395 (LOE13_21385) | 67780..68400 | + | 621 | WP_224557591.1 | hypothetical protein | - |
| LOE13_RS21400 (LOE13_21390) | 68400..70484 | + | 2085 | WP_229940894.1 | caspase family protein | - |
| LOE13_RS21405 (LOE13_21395) | 70583..71563 | - | 981 | WP_224557589.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE13_RS21410 (LOE13_21400) | 71560..72762 | - | 1203 | WP_224557588.1 | Cell division protein PomZ | VF |
| LOE13_RS21415 (LOE13_21405) | 73388..74398 | + | 1011 | WP_037930116.1 | RepB family plasmid replication initiator protein | - |
| LOE13_RS21420 (LOE13_21410) | 74535..75971 | - | 1437 | WP_224557587.1 | hypothetical protein | - |
| LOE13_RS21425 (LOE13_21415) | 75968..77557 | - | 1590 | WP_224557585.1 | CHAT domain-containing protein | - |
| LOE13_RS21430 (LOE13_21420) | 78132..78887 | - | 756 | WP_224557583.1 | IclR family transcriptional regulator C-terminal domain-containing protein | - |
| LOE13_RS21435 (LOE13_21425) | 79000..79707 | + | 708 | WP_224557581.1 | 3-oxoacid CoA-transferase subunit A | - |
| LOE13_RS21440 (LOE13_21430) | 79704..80390 | + | 687 | WP_229939282.1 | 3-oxoacid CoA-transferase subunit B | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|