MGE detailed information

MGE type: Non-Mobilizable plasmid        MGE length: 168034 bp
Accession: NZ_CP086956        Location: 1..168034         Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-27       Replicon: plasmid P2


Gene structure


The 5 kb flanking regions of this MGE are displayed.

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
LOE13_RS19815 (LOE13_19810) 9..197 + 189 WP_224558006.1 Flp family type IVb pilin -
LOE13_RS19820 (LOE13_19815) 243..1163 + 921 WP_229940643.1 Flp pilus assembly protein CpaB -
LOE13_RS19825 (LOE13_19820) 1185..2540 + 1356 WP_224557979.1 type II and III secretion system protein family protein -
LOE13_RS19830 (LOE13_19825) 2543..3082 + 540 WP_224557980.1 CpaD family pilus assembly protein -
LOE13_RS19835 (LOE13_19830) 3104..4345 + 1242 WP_224557981.1 hypothetical protein -
LOE13_RS19840 (LOE13_19835) 4338..5882 + 1545 WP_037925008.1 CpaF family protein -
LOE13_RS19845 (LOE13_19840) 5879..6847 + 969 WP_224557982.1 type II secretion system F family protein -
LOE13_RS19850 (LOE13_19845) 6849..7799 + 951 WP_229939089.1 type II secretion system F family protein -
LOE13_RS19855 (LOE13_19850) 7796..8218 + 423 WP_224557940.1 pilus assembly protein -
LOE13_RS19860 (LOE13_19855) 8208..9983 + 1776 WP_224557939.1 pilus assembly protein TadG-related protein -
LOE13_RS19865 (LOE13_19860) 10030..10836 + 807 WP_051539349.1 tetratricopeptide repeat protein -
LOE13_RS19870 (LOE13_19865) 11288..11764 + 477 WP_224557938.1 MarR family transcriptional regulator -
LOE13_RS19875 (LOE13_19870) 11786..12814 - 1029 WP_224557937.1 IS30 family transposase -
LOE13_RS19880 (LOE13_19875) 13097..13831 - 735 WP_224557936.1 hypothetical protein -
LOE13_RS19885 (LOE13_19880) 13929..14210 - 282 WP_224557935.1 hypothetical protein -
LOE13_RS19890 (LOE13_19885) 14350..16041 + 1692 WP_224557934.1 hypothetical protein -
LOE13_RS19895 (LOE13_19890) 16054..17058 + 1005 WP_224557933.1 alpha/beta hydrolase family protein -
LOE13_RS19900 (LOE13_19895) 17132..17335 - 204 WP_229939166.1 hypothetical protein -
LOE13_RS19905 (LOE13_19900) 17595..17963 + 369 WP_008327368.1 hypothetical protein -
LOE13_RS19910 (LOE13_19905) 18222..19124 - 903 Protein_19 methyltransferase -
LOE13_RS19915 (LOE13_19910) 19416..20524 - 1109 Protein_20 IS110 family transposase -
LOE13_RS19920 (LOE13_19915) 20626..20949 - 324 Protein_21 methylase -
LOE13_RS19925 (LOE13_19920) 21086..21481 - 396 WP_224557987.1 type II toxin-antitoxin system death-on-curing family toxin -
LOE13_RS19930 (LOE13_19925) 21478..21702 - 225 WP_108693368.1 transcriptional regulator/antitoxin MazE -
LOE13_RS19935 (LOE13_19930) 22625..23143 - 519 Protein_24 type II toxin-antitoxin system YhaV family toxin -
LOE13_RS19940 (LOE13_19935) 23140..23466 - 327 WP_224557985.1 type II toxin-antitoxin system PrlF family antitoxin -
LOE13_RS19945 (LOE13_19940) 23590..24243 - 654 WP_224557984.1 hypothetical protein -
LOE13_RS19950 (LOE13_19945) 24243..24803 - 561 WP_224557983.1 regulator -
LOE13_RS19955 (LOE13_19950) 24877..26859 - 1983 WP_090525078.1 ParB/RepB/Spo0J family partition protein -
LOE13_RS19960 (LOE13_19955) 27323..28353 - 1031 Protein_29 IS110 family transposase -
LOE13_RS19965 (LOE13_19960) 28557..28946 - 390 WP_224556806.1 DUF3768 domain-containing protein -
LOE13_RS19970 (LOE13_19965) 29051..29974 - 924 WP_224556808.1 zincin-like metallopeptidase domain-containing protein -
LOE13_RS19975 (LOE13_19970) 30570..31451 - 882 WP_224556810.1 formyltetrahydrofolate deformylase -
LOE13_RS19980 (LOE13_19975) 31554..32108 - 555 WP_224556812.1 sarcosine oxidase subunit gamma -
LOE13_RS19985 (LOE13_19980) 32101..35046 - 2946 WP_224556814.1 sarcosine oxidase subunit alpha family protein -
LOE13_RS19990 (LOE13_19985) 35043..35339 - 297 WP_028957964.1 sarcosine oxidase subunit delta -
LOE13_RS19995 (LOE13_19990) 35350..36600 - 1251 WP_224556816.1 sarcosine oxidase subunit beta family protein -
LOE13_RS20000 (LOE13_19995) 36712..37695 + 984 WP_037930317.1 GlxA family transcriptional regulator -
LOE13_RS20005 (LOE13_20000) 37735..38484 - 750 WP_224556817.1 IclR family transcriptional regulator -
LOE13_RS20010 (LOE13_20005) 38496..39923 - 1428 WP_224556820.1 formimidoylglutamate deiminase -
LOE13_RS20015 (LOE13_20010) 39920..40735 - 816 WP_229940640.1 N-formylglutamate deformylase -
LOE13_RS20020 (LOE13_20015) 40878..41855 + 978 WP_037930311.1 TAXI family TRAP transporter solute-binding subunit -
LOE13_RS20025 (LOE13_20020) 41855..42361 + 507 WP_051694641.1 DUF1850 domain-containing protein -
LOE13_RS20030 (LOE13_20025) 42358..44589 + 2232 WP_051694640.1 TRAP transporter permease -
LOE13_RS20035 (LOE13_20030) 44642..45844 - 1203 WP_224556823.1 CoA transferase -
LOE13_RS20040 (LOE13_20035) 45932..46894 - 963 WP_224556825.1 tripartite tricarboxylate transporter substrate binding protein -
LOE13_RS20045 (LOE13_20040) 46913..48448 - 1536 WP_224556827.1 tripartite tricarboxylate transporter permease -
LOE13_RS20050 (LOE13_20045) 48456..48905 - 450 WP_224556829.1 tripartite tricarboxylate transporter TctB family protein -
LOE13_RS20055 (LOE13_20050) 49076..50035 + 960 WP_224556831.1 LysR family transcriptional regulator -
LOE13_RS20060 (LOE13_20055) 50186..51244 + 1059 WP_224556832.1 siderophore-interacting protein -
LOE13_RS20065 (LOE13_20060) 51285..52256 + 972 WP_224556833.1 ABC transporter substrate-binding protein -
LOE13_RS20070 (LOE13_20065) 52253..53254 + 1002 WP_229939097.1 iron ABC transporter permease -
LOE13_RS20075 (LOE13_20070) 53323..54297 + 975 WP_229939136.1 iron chelate uptake ABC transporter family permease subunit -
LOE13_RS20080 (LOE13_20075) 54294..55124 + 831 WP_224556836.1 ABC transporter ATP-binding protein -
LOE13_RS20085 (LOE13_20080) 55292..57292 + 2001 WP_224556837.1 TonB-dependent siderophore receptor -
LOE13_RS20090 (LOE13_20085) 57933..60179 - 2247 WP_224556838.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
LOE13_RS20095 (LOE13_20090) 60172..61227 - 1056 WP_224556839.1 xanthine dehydrogenase family protein subunit M -
LOE13_RS20100 (LOE13_20095) 61224..61721 - 498 WP_224556840.1 (2Fe-2S)-binding protein -
LOE13_RS20105 (LOE13_20100) 61860..62432 + 573 WP_229939138.1 TetR/AcrR family transcriptional regulator -
LOE13_RS20110 (LOE13_20105) 62849..63139 + 291 WP_224556843.1 hypothetical protein -
LOE13_RS20115 (LOE13_20110) 63557..64891 - 1335 WP_224556846.1 type II toxin-antitoxin system HipA family toxin -
LOE13_RS20120 (LOE13_20115) 64891..65142 - 252 WP_224556848.1 helix-turn-helix domain-containing protein -
LOE13_RS20125 (LOE13_20120) 65615..66088 + 474 WP_224556849.1 MarR family winged helix-turn-helix transcriptional regulator -
LOE13_RS20130 (LOE13_20125) 66274..67032 + 759 WP_224556852.1 enoyl-CoA hydratase -
LOE13_RS20135 (LOE13_20130) 67120..67671 + 552 WP_224556854.1 gamma carbonic anhydrase family protein -
LOE13_RS20140 (LOE13_20135) 67821..70043 - 2223 WP_224556857.1 PAS-domain containing protein -
LOE13_RS20145 (LOE13_20140) 70040..71086 - 1047 WP_229939099.1 FIST N-terminal domain-containing protein -
LOE13_RS20150 (LOE13_20145) 71273..71974 - 702 WP_224556861.1 response regulator transcription factor -
LOE13_RS20155 (LOE13_20150) 72085..73860 - 1776 WP_224556863.1 PQQ-dependent methanol/ethanol family dehydrogenase -
LOE13_RS20160 (LOE13_20155) 74090..75025 + 936 WP_229944119.1 ABC transporter substrate-binding protein -
LOE13_RS20165 (LOE13_20160) 75031..75705 + 675 WP_224556995.1 ABC transporter ATP-binding protein -
LOE13_RS20170 (LOE13_20165) 75645..76181 - 537 WP_224556869.1 sel1 repeat family protein -
LOE13_RS20175 (LOE13_20170) 76216..77007 - 792 WP_224556871.1 ABC transporter permease -
LOE13_RS20180 (LOE13_20175) 77004..77720 - 717 WP_224556875.1 ATP-binding cassette domain-containing protein -
LOE13_RS20185 (LOE13_20180) 77717..78166 - 450 WP_224556878.1 hypothetical protein -
LOE13_RS20190 (LOE13_20185) 78184..79143 - 960 WP_224556880.1 YVTN family beta-propeller repeat protein -
LOE13_RS20195 (LOE13_20190) 79140..80318 - 1179 WP_229940639.1 ABC transporter substrate-binding protein -
LOE13_RS20200 (LOE13_20195) 80460..81158 + 699 WP_224556885.1 cytochrome c-550 PedF -
LOE13_RS20205 (LOE13_20200) 81193..82065 + 873 WP_224556997.1 transporter substrate-binding domain-containing protein -
LOE13_RS20210 (LOE13_20205) 82215..82700 + 486 WP_224556887.1 (2Fe-2S)-binding protein -
LOE13_RS20215 (LOE13_20210) 82722..85094 + 2373 WP_224556889.1 xanthine dehydrogenase family protein molybdopterin-binding subunit -
LOE13_RS20220 (LOE13_20215) 85105..85887 + 783 WP_224556891.1 xanthine dehydrogenase family protein subunit M -
LOE13_RS20225 (LOE13_20220) 85952..86824 - 873 WP_224556893.1 FAD:protein FMN transferase -
LOE13_RS20230 (LOE13_20225) 86821..88902 - 2082 WP_224556895.1 4Fe-4S binding protein -
LOE13_RS20235 (LOE13_20230) 89026..89802 + 777 WP_224556896.1 ABC transporter permease -
LOE13_RS20240 (LOE13_20235) 89799..90485 - 687 WP_224556898.1 vWA domain-containing protein -
LOE13_RS20245 (LOE13_20240) 90501..91586 - 1086 WP_224556900.1 pyrroloquinoline quinone biosynthesis protein PqqE -
LOE13_RS20250 (LOE13_20245) 91570..91848 - 279 WP_224556902.1 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD -
LOE13_RS20255 (LOE13_20250) 91848..92591 - 744 WP_224556903.1 pyrroloquinoline-quinone synthase PqqC -
LOE13_RS20260 (LOE13_20255) 92588..93475 - 888 WP_224556905.1 pyrroloquinoline quinone biosynthesis protein PqqB -
LOE13_RS20265 (LOE13_20260) 93489..93596 - 108 WP_224556908.1 pyrroloquinoline quinone precursor peptide PqqA -
LOE13_RS20270 (LOE13_20265) 93767..94162 + 396 WP_224556911.1 cytochrome c family protein -
LOE13_RS20275 (LOE13_20270) 94176..94697 + 522 WP_224556913.1 carbon monoxide dehydrogenase subunit G -
LOE13_RS20280 (LOE13_20275) 94999..95886 - 888 WP_224556916.1 LysR family transcriptional regulator -
LOE13_RS20285 (LOE13_20280) 95987..96598 + 612 WP_224556921.1 glutathione transferase GstA -
LOE13_RS20290 (LOE13_20285) 96595..96975 + 381 WP_224556923.1 nuclear transport factor 2 family protein -
LOE13_RS20295 (LOE13_20290) 96979..97197 + 219 WP_224556926.1 4-oxalocrotonate tautomerase family protein -
LOE13_RS20300 (LOE13_20295) 97578..99059 - 1482 WP_224556929.1 sodium:solute symporter family protein -
LOE13_RS20305 (LOE13_20300) 99056..99241 - 186 WP_224556932.1 hypothetical protein -
LOE13_RS20310 (LOE13_20305) 99358..99981 - 624 WP_224556935.1 isochorismatase family protein -
LOE13_RS20315 (LOE13_20310) 100003..101034 - 1032 WP_224556938.1 leucyl aminopeptidase -
LOE13_RS20320 (LOE13_20315) 101062..101844 - 783 WP_224556941.1 alpha/beta hydrolase -
LOE13_RS20325 (LOE13_20320) 101856..102557 - 702 WP_224557001.1 maleate isomerase -
LOE13_RS20330 (LOE13_20325) 102718..103386 - 669 WP_224556944.1 TetR/AcrR family transcriptional regulator -
LOE13_RS20335 (LOE13_20330) 103394..103858 - 465 WP_224556946.1 MarR family transcriptional regulator -
LOE13_RS20340 (LOE13_20335) 104154..104666 + 513 WP_224556948.1 (2Fe-2S)-binding protein -
LOE13_RS20345 (LOE13_20340) 104663..108076 + 3414 WP_224556949.1 molybdopterin-dependent oxidoreductase -
LOE13_RS20350 (LOE13_20345) 108270..109403 + 1134 WP_224557003.1 FAD-dependent monooxygenase -
LOE13_RS20355 (LOE13_20350) 109391..109527 - 137 Protein_108 IS481 family transposase -
LOE13_RS20360 (LOE13_20355) 109579..111246 - 1668 WP_224556950.1 sulfatase-like hydrolase/transferase -
LOE13_RS20365 (LOE13_20360) 111309..111665 - 357 WP_224556951.1 hypothetical protein -
LOE13_RS20370 (LOE13_20365) 111907..112398 - 492 WP_224557005.1 3-keto-5-aminohexanoate cleavage protein -
LOE13_RS20375 (LOE13_20370) 112564..113508 + 945 Protein_112 transposase -
LOE13_RS20380 (LOE13_20375) 113509..114420 + 912 Protein_113 IS3 family transposase -
LOE13_RS20385 (LOE13_20380) 115052..115303 + 252 WP_224556953.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin Detail
LOE13_RS20390 (LOE13_20385) 115300..115566 + 267 WP_224556955.1 Txe/YoeB family addiction module toxin Toxin Detail
LOE13_RS20395 (LOE13_20390) 115627..116445 - 819 WP_229940646.1 hypothetical protein -
LOE13_RS20400 (LOE13_20395) 116536..117239 + 704 Protein_117 IS6 family transposase -
LOE13_RS20405 (LOE13_20400) 117457..118314 - 858 WP_229940775.1 zinc-binding dehydrogenase -
LOE13_RS20410 (LOE13_20405) 120168..121223 - 1056 WP_224556960.1 plasmid replication protein RepC -
LOE13_RS20415 (LOE13_20410) 121462..122433 - 972 WP_224556962.1 plasmid partitioning protein RepB -
LOE13_RS20420 (LOE13_20415) 122433..123632 - 1200 WP_037930394.1 plasmid partitioning protein RepA -
LOE13_RS20425 (LOE13_20420) 124115..124273 - 159 Protein_122 short-chain dehydrogenase -
LOE13_RS20430 (LOE13_20425) 124361..125458 - 1098 WP_229939103.1 glycoside hydrolase family 88 protein -
LOE13_RS20435 (LOE13_20430) 125490..126557 - 1068 WP_224556967.1 TRAP transporter substrate-binding protein -
LOE13_RS20440 (LOE13_20435) 126865..127365 + 501 WP_224556969.1 TRAP transporter small permease -
LOE13_RS20445 (LOE13_20440) 127388..128695 + 1308 WP_229939144.1 TRAP transporter large permease -
LOE13_RS20450 (LOE13_20445) 128709..129449 + 741 WP_224556975.1 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD -
LOE13_RS20455 (LOE13_20450) 129454..130470 - 1017 WP_224556977.1 LacI family DNA-binding transcriptional regulator -
LOE13_RS20460 (LOE13_20455) 130713..131549 + 837 WP_224556979.1 5-dehydro-4-deoxy-D-glucuronate isomerase -
LOE13_RS20465 (LOE13_20460) 131553..134012 + 2460 WP_224556981.1 hypothetical protein -
LOE13_RS20470 (LOE13_20465) 134490..135080 + 591 WP_229939111.1 NAD(P)H-dependent oxidoreductase -
LOE13_RS24170 135172..135294 + 123 WP_269140185.1 hypothetical protein -
LOE13_RS20475 (LOE13_20470) 135797..136681 + 885 WP_224556983.1 DUF1403 family protein -
LOE13_RS20480 (LOE13_20475) 136684..137298 + 615 WP_224556984.1 SMC-Scp complex subunit ScpB -
LOE13_RS20485 (LOE13_20480) 137399..137614 + 216 WP_224556986.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
LOE13_RS20490 (LOE13_20485) 137641..138144 + 504 WP_224556988.1 type II toxin-antitoxin system VapC family toxin -
LOE13_RS20495 (LOE13_20490) 138038..138750 + 713 Protein_137 IS6 family transposase -
LOE13_RS20500 (LOE13_20495) 139036..139209 - 174 WP_229939113.1 DDE-type integrase/transposase/recombinase -
LOE13_RS20505 (LOE13_20500) 140984..141373 - 390 WP_224556990.1 helix-turn-helix domain-containing protein -
LOE13_RS20510 (LOE13_20505) 141794..141898 + 105 WP_229939115.1 hypothetical protein -
LOE13_RS20515 141898..142161 + 264 WP_229940645.1 hypothetical protein -
LOE13_RS20520 (LOE13_20510) 142425..143309 + 885 WP_224556992.1 DUF1403 family protein -
LOE13_RS20525 (LOE13_20515) 143312..143905 + 594 WP_224556993.1 SMC-Scp complex subunit ScpB -
LOE13_RS20530 (LOE13_20520) 144191..144469 + 279 WP_229939064.1 transposase -
LOE13_RS20535 (LOE13_20525) 144466..144813 + 348 WP_224558021.1 IS66 family insertion sequence element accessory protein TnpB -
LOE13_RS20540 (LOE13_20530) 144892..146418 + 1527 WP_224558022.1 IS66 family transposase -
LOE13_RS20545 (LOE13_20535) 146358..147604 - 1247 Protein_147 IS3 family transposase -
LOE13_RS20550 (LOE13_20540) 147687..147845 - 159 WP_224557998.1 hypothetical protein -
LOE13_RS20555 (LOE13_20545) 148000..148269 + 270 WP_229940776.1 hypothetical protein -
LOE13_RS20560 (LOE13_20550) 148534..149492 - 959 Protein_150 IS481 family transposase -
LOE13_RS20565 (LOE13_20555) 149598..150302 + 705 WP_229941115.1 AAA family ATPase -
LOE13_RS20570 (LOE13_20560) 150247..151461 + 1215 WP_224558000.1 IS256 family transposase -
LOE13_RS20575 (LOE13_20565) 151715..153253 + 1539 WP_229939051.1 IS21 family transposase -
LOE13_RS20580 (LOE13_20570) 153268..154032 + 765 WP_224558013.1 IS21-like element helper ATPase IstB -
LOE13_RS20585 (LOE13_20575) 154120..154281 - 162 WP_224557958.1 hypothetical protein -
LOE13_RS20590 (LOE13_20580) 154834..158064 + 3231 WP_224557960.1 type II CRISPR RNA-guided endonuclease Cas9 -
LOE13_RS20595 (LOE13_20585) 158784..159185 + 402 WP_224557962.1 transposase -
LOE13_RS20600 (LOE13_20590) 159185..159535 + 351 WP_224557963.1 IS66 family insertion sequence element accessory protein TnpB -
LOE13_RS20605 (LOE13_20595) 159596..161227 + 1632 WP_224557964.1 IS66 family transposase -
LOE13_RS20610 (LOE13_20600) 161230..161451 + 222 WP_224557965.1 hypothetical protein -
LOE13_RS20615 (LOE13_20605) 161771..161986 + 216 WP_229940644.1 hypothetical protein -
LOE13_RS20620 (LOE13_20610) 162746..163024 + 279 WP_229939064.1 transposase -
LOE13_RS20625 (LOE13_20615) 163021..163368 + 348 WP_224558021.1 IS66 family insertion sequence element accessory protein TnpB -
LOE13_RS20630 (LOE13_20620) 163447..164973 + 1527 WP_224558022.1 IS66 family transposase -
LOE13_RS20635 (LOE13_20625) 165188..165295 + 108 Protein_165 transposase -
LOE13_RS20640 (LOE13_20630) 166933..167487 + 555 WP_224558005.1 hypothetical protein -

Similar MGE(s)


Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.

Detail Organism MGE type Related TA Genome accession Coordinates Mash
distance