MGE detailed information
MGE type: Non-Mobilizable plasmid MGE length: 149480 bp
Accession: NZ_CP086931 Location: 1..149480 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-30 Replicon: plasmid P1
Accession: NZ_CP086931 Location: 1..149480 Organism: Pseudosulfitobacter pseudonitzschiae strain SC1-30 Replicon: plasmid P1
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LOE16_RS19255 (LOE16_19245) | 100..618 | - | 519 | Protein_0 | type II toxin-antitoxin system YhaV family toxin | - |
| LOE16_RS19260 (LOE16_19250) | 615..941 | - | 327 | WP_224557985.1 | type II toxin-antitoxin system PrlF family antitoxin | - |
| LOE16_RS19265 (LOE16_19255) | 1065..1718 | - | 654 | WP_224557984.1 | hypothetical protein | - |
| LOE16_RS19270 (LOE16_19260) | 1718..2278 | - | 561 | WP_224557983.1 | regulator | - |
| LOE16_RS19275 (LOE16_19265) | 2352..4334 | - | 1983 | WP_090525078.1 | ParB/RepB/Spo0J family partition protein | - |
| LOE16_RS19280 (LOE16_19270) | 4798..5829 | - | 1032 | WP_224558028.1 | IS110 family transposase | - |
| LOE16_RS19285 (LOE16_19275) | 6033..6422 | - | 390 | WP_224556806.1 | DUF3768 domain-containing protein | - |
| LOE16_RS19290 (LOE16_19280) | 6527..7450 | - | 924 | WP_224556808.1 | zincin-like metallopeptidase domain-containing protein | - |
| LOE16_RS19295 (LOE16_19285) | 8046..8927 | - | 882 | WP_224556810.1 | formyltetrahydrofolate deformylase | - |
| LOE16_RS19300 (LOE16_19290) | 9030..9584 | - | 555 | WP_224556812.1 | sarcosine oxidase subunit gamma | - |
| LOE16_RS19305 (LOE16_19295) | 9577..12522 | - | 2946 | WP_224556814.1 | sarcosine oxidase subunit alpha family protein | - |
| LOE16_RS19310 (LOE16_19300) | 12519..12815 | - | 297 | WP_028957964.1 | sarcosine oxidase subunit delta | - |
| LOE16_RS19315 (LOE16_19305) | 12826..14076 | - | 1251 | WP_224556816.1 | sarcosine oxidase subunit beta family protein | - |
| LOE16_RS19320 (LOE16_19310) | 14188..15171 | + | 984 | WP_037930317.1 | GlxA family transcriptional regulator | - |
| LOE16_RS19325 (LOE16_19315) | 15211..15960 | - | 750 | WP_224556817.1 | IclR family transcriptional regulator | - |
| LOE16_RS19330 (LOE16_19320) | 15972..17399 | - | 1428 | WP_224556820.1 | formimidoylglutamate deiminase | - |
| LOE16_RS19335 (LOE16_19325) | 17396..18211 | - | 816 | WP_229940640.1 | N-formylglutamate deformylase | - |
| LOE16_RS19340 (LOE16_19330) | 18354..19331 | + | 978 | WP_037930311.1 | TAXI family TRAP transporter solute-binding subunit | - |
| LOE16_RS19345 (LOE16_19335) | 19331..19837 | + | 507 | WP_051694641.1 | DUF1850 domain-containing protein | - |
| LOE16_RS19350 (LOE16_19340) | 19834..22065 | + | 2232 | WP_051694640.1 | TRAP transporter permease | - |
| LOE16_RS19355 (LOE16_19345) | 22118..23320 | - | 1203 | WP_224556823.1 | CoA transferase | - |
| LOE16_RS19360 (LOE16_19350) | 23408..24370 | - | 963 | WP_224556825.1 | tripartite tricarboxylate transporter substrate binding protein | - |
| LOE16_RS19365 (LOE16_19355) | 24389..25924 | - | 1536 | WP_224556827.1 | tripartite tricarboxylate transporter permease | - |
| LOE16_RS19370 (LOE16_19360) | 25932..26381 | - | 450 | WP_224556829.1 | tripartite tricarboxylate transporter TctB family protein | - |
| LOE16_RS19375 (LOE16_19365) | 26588..27511 | + | 924 | WP_229940879.1 | LysR family transcriptional regulator | - |
| LOE16_RS19380 (LOE16_19370) | 27662..28720 | + | 1059 | WP_224556832.1 | siderophore-interacting protein | - |
| LOE16_RS19385 (LOE16_19375) | 28761..29732 | + | 972 | WP_224556833.1 | ABC transporter substrate-binding protein | - |
| LOE16_RS19390 (LOE16_19380) | 29729..30730 | + | 1002 | WP_229939097.1 | iron ABC transporter permease | - |
| LOE16_RS19395 (LOE16_19385) | 30799..31773 | + | 975 | WP_229939136.1 | iron chelate uptake ABC transporter family permease subunit | - |
| LOE16_RS19400 (LOE16_19390) | 31770..32600 | + | 831 | WP_224556836.1 | ABC transporter ATP-binding protein | - |
| LOE16_RS19405 (LOE16_19395) | 32768..34768 | + | 2001 | WP_224556837.1 | TonB-dependent siderophore receptor | - |
| LOE16_RS19410 (LOE16_19400) | 35409..37655 | - | 2247 | WP_224556838.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
| LOE16_RS19415 (LOE16_19405) | 37648..38703 | - | 1056 | WP_224556839.1 | xanthine dehydrogenase family protein subunit M | - |
| LOE16_RS19420 (LOE16_19410) | 38700..39197 | - | 498 | WP_224556840.1 | (2Fe-2S)-binding protein | - |
| LOE16_RS19425 (LOE16_19415) | 39336..39908 | + | 573 | WP_229939138.1 | TetR/AcrR family transcriptional regulator | - |
| LOE16_RS19430 (LOE16_19420) | 40325..40615 | + | 291 | WP_224556843.1 | hypothetical protein | - |
| LOE16_RS19435 (LOE16_19425) | 41033..42367 | - | 1335 | WP_224556846.1 | type II toxin-antitoxin system HipA family toxin | - |
| LOE16_RS19440 (LOE16_19430) | 42367..42618 | - | 252 | WP_224556848.1 | helix-turn-helix domain-containing protein | - |
| LOE16_RS19445 (LOE16_19435) | 43091..43564 | + | 474 | WP_224556849.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| LOE16_RS19450 (LOE16_19440) | 43750..44508 | + | 759 | WP_224556852.1 | enoyl-CoA hydratase | - |
| LOE16_RS19455 (LOE16_19445) | 44596..45147 | + | 552 | WP_224556854.1 | gamma carbonic anhydrase family protein | - |
| LOE16_RS19460 (LOE16_19450) | 45297..47519 | - | 2223 | WP_224556857.1 | PAS-domain containing protein | - |
| LOE16_RS19465 (LOE16_19455) | 47516..48562 | - | 1047 | WP_229939099.1 | FIST N-terminal domain-containing protein | - |
| LOE16_RS19470 (LOE16_19460) | 48749..49450 | - | 702 | WP_224556861.1 | response regulator transcription factor | - |
| LOE16_RS19475 (LOE16_19465) | 49561..51336 | - | 1776 | WP_224556863.1 | PQQ-dependent methanol/ethanol family dehydrogenase | - |
| LOE16_RS19480 (LOE16_19470) | 51524..52501 | + | 978 | WP_224556865.1 | ABC transporter substrate-binding protein | - |
| LOE16_RS19485 (LOE16_19475) | 52507..53181 | + | 675 | WP_224556995.1 | ABC transporter ATP-binding protein | - |
| LOE16_RS19490 (LOE16_19480) | 53121..53657 | - | 537 | WP_224556869.1 | sel1 repeat family protein | - |
| LOE16_RS19495 (LOE16_19485) | 53692..54483 | - | 792 | WP_224556871.1 | ABC transporter permease | - |
| LOE16_RS19500 (LOE16_19490) | 54480..55196 | - | 717 | WP_224556875.1 | ATP-binding cassette domain-containing protein | - |
| LOE16_RS19505 (LOE16_19495) | 55193..55642 | - | 450 | WP_224556878.1 | hypothetical protein | - |
| LOE16_RS19510 (LOE16_19500) | 55660..56619 | - | 960 | WP_224556880.1 | YVTN family beta-propeller repeat protein | - |
| LOE16_RS19515 (LOE16_19505) | 56616..57746 | - | 1131 | WP_224556882.1 | ABC transporter substrate-binding protein | - |
| LOE16_RS19520 (LOE16_19510) | 57936..58634 | + | 699 | WP_224556885.1 | cytochrome c-550 PedF | - |
| LOE16_RS19525 (LOE16_19515) | 58669..59541 | + | 873 | WP_224556997.1 | transporter substrate-binding domain-containing protein | - |
| LOE16_RS19530 (LOE16_19520) | 59691..60176 | + | 486 | WP_224556887.1 | (2Fe-2S)-binding protein | - |
| LOE16_RS19535 (LOE16_19525) | 60198..62570 | + | 2373 | WP_224556889.1 | xanthine dehydrogenase family protein molybdopterin-binding subunit | - |
| LOE16_RS19540 (LOE16_19530) | 62581..63363 | + | 783 | WP_224556891.1 | xanthine dehydrogenase family protein subunit M | - |
| LOE16_RS19545 (LOE16_19535) | 63428..64300 | - | 873 | WP_224556893.1 | FAD:protein FMN transferase | - |
| LOE16_RS19550 (LOE16_19540) | 64297..66378 | - | 2082 | WP_224556895.1 | 4Fe-4S binding protein | - |
| LOE16_RS19555 (LOE16_19545) | 66502..67278 | + | 777 | WP_224556896.1 | ABC transporter permease | - |
| LOE16_RS19560 (LOE16_19550) | 67275..67961 | - | 687 | WP_224556898.1 | vWA domain-containing protein | - |
| LOE16_RS19565 (LOE16_19555) | 67977..69062 | - | 1086 | WP_224556900.1 | pyrroloquinoline quinone biosynthesis protein PqqE | - |
| LOE16_RS19570 (LOE16_19560) | 69046..69324 | - | 279 | WP_224556902.1 | pyrroloquinoline quinone biosynthesis peptide chaperone PqqD | - |
| LOE16_RS19575 (LOE16_19565) | 69324..70067 | - | 744 | WP_224556903.1 | pyrroloquinoline-quinone synthase PqqC | - |
| LOE16_RS19580 (LOE16_19570) | 70064..70951 | - | 888 | WP_224556905.1 | pyrroloquinoline quinone biosynthesis protein PqqB | - |
| LOE16_RS19585 (LOE16_19575) | 70965..71072 | - | 108 | WP_224556908.1 | pyrroloquinoline quinone precursor peptide PqqA | - |
| LOE16_RS19590 (LOE16_19580) | 71243..71638 | + | 396 | WP_224556911.1 | cytochrome c family protein | - |
| LOE16_RS19595 (LOE16_19585) | 71652..72173 | + | 522 | WP_224556913.1 | carbon monoxide dehydrogenase subunit G | - |
| LOE16_RS19600 (LOE16_19590) | 72475..73362 | - | 888 | WP_224556916.1 | LysR family transcriptional regulator | - |
| LOE16_RS19605 (LOE16_19595) | 73463..74074 | + | 612 | WP_224556921.1 | glutathione transferase GstA | - |
| LOE16_RS19610 (LOE16_19600) | 74071..74451 | + | 381 | WP_224556923.1 | nuclear transport factor 2 family protein | - |
| LOE16_RS19615 (LOE16_19605) | 74455..74673 | + | 219 | WP_224556926.1 | 4-oxalocrotonate tautomerase family protein | - |
| LOE16_RS19620 (LOE16_19610) | 75054..76535 | - | 1482 | WP_224556929.1 | sodium:solute symporter family protein | - |
| LOE16_RS19625 (LOE16_19615) | 76532..76717 | - | 186 | WP_224556932.1 | hypothetical protein | - |
| LOE16_RS19630 (LOE16_19620) | 76834..77457 | - | 624 | WP_224556935.1 | isochorismatase family protein | - |
| LOE16_RS19635 (LOE16_19625) | 77479..78510 | - | 1032 | WP_224556938.1 | leucyl aminopeptidase | - |
| LOE16_RS19640 (LOE16_19630) | 78538..79320 | - | 783 | WP_224556941.1 | alpha/beta hydrolase | - |
| LOE16_RS19645 (LOE16_19635) | 79332..80033 | - | 702 | WP_224557001.1 | maleate isomerase | - |
| LOE16_RS19650 (LOE16_19640) | 80194..80862 | - | 669 | WP_224556944.1 | TetR/AcrR family transcriptional regulator | - |
| LOE16_RS19655 (LOE16_19645) | 80870..81334 | - | 465 | WP_224556946.1 | MarR family transcriptional regulator | - |
| LOE16_RS19660 (LOE16_19650) | 81630..82142 | + | 513 | WP_224556948.1 | (2Fe-2S)-binding protein | - |
| LOE16_RS19665 (LOE16_19655) | 82139..85552 | + | 3414 | WP_224556949.1 | molybdopterin-dependent oxidoreductase | - |
| LOE16_RS19670 (LOE16_19660) | 85746..86879 | + | 1134 | WP_224557003.1 | FAD-dependent monooxygenase | - |
| LOE16_RS19675 (LOE16_19665) | 86867..87003 | - | 137 | Protein_84 | IS481 family transposase | - |
| LOE16_RS19680 (LOE16_19670) | 87055..88722 | - | 1668 | WP_224556950.1 | sulfatase-like hydrolase/transferase | - |
| LOE16_RS19685 (LOE16_19675) | 88785..89141 | - | 357 | WP_224556951.1 | hypothetical protein | - |
| LOE16_RS19690 (LOE16_19680) | 89383..89874 | - | 492 | WP_224557005.1 | 3-keto-5-aminohexanoate cleavage protein | - |
| LOE16_RS19695 (LOE16_19685) | 90040..90984 | + | 945 | Protein_88 | transposase | - |
| LOE16_RS19700 (LOE16_19690) | 90985..91896 | + | 912 | Protein_89 | IS3 family transposase | - |
| LOE16_RS19705 (LOE16_19695) | 92528..92779 | + | 252 | WP_224556953.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | Antitoxin Detail |
| LOE16_RS19710 (LOE16_19700) | 92776..93042 | + | 267 | WP_224556955.1 | Txe/YoeB family addiction module toxin | Toxin Detail |
| LOE16_RS19715 (LOE16_19705) | 93103..93921 | - | 819 | WP_229940646.1 | hypothetical protein | - |
| LOE16_RS19720 (LOE16_19710) | 94012..94715 | + | 704 | Protein_93 | IS6 family transposase | - |
| LOE16_RS19725 (LOE16_19715) | 94933..95790 | - | 858 | WP_229940775.1 | zinc-binding dehydrogenase | - |
| LOE16_RS19730 (LOE16_19720) | 97644..98699 | - | 1056 | WP_224556960.1 | plasmid replication protein RepC | - |
| LOE16_RS19735 (LOE16_19725) | 98938..99909 | - | 972 | WP_224556962.1 | plasmid partitioning protein RepB | - |
| LOE16_RS19740 (LOE16_19730) | 99909..101108 | - | 1200 | WP_037930394.1 | plasmid partitioning protein RepA | - |
| LOE16_RS19745 (LOE16_19735) | 101591..101749 | - | 159 | Protein_98 | short-chain dehydrogenase | - |
| LOE16_RS19750 (LOE16_19740) | 101837..102934 | - | 1098 | WP_229939103.1 | glycoside hydrolase family 88 protein | - |
| LOE16_RS19755 (LOE16_19745) | 102966..104033 | - | 1068 | WP_224556967.1 | TRAP transporter substrate-binding protein | - |
| LOE16_RS19760 (LOE16_19750) | 104341..104841 | + | 501 | WP_224556969.1 | TRAP transporter small permease | - |
| LOE16_RS19765 (LOE16_19755) | 104864..106171 | + | 1308 | WP_229939144.1 | TRAP transporter large permease | - |
| LOE16_RS19770 (LOE16_19760) | 106185..106925 | + | 741 | WP_224556975.1 | 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD | - |
| LOE16_RS19775 (LOE16_19765) | 106930..107946 | - | 1017 | WP_224556977.1 | LacI family DNA-binding transcriptional regulator | - |
| LOE16_RS19780 (LOE16_19770) | 108189..109025 | + | 837 | WP_224556979.1 | 5-dehydro-4-deoxy-D-glucuronate isomerase | - |
| LOE16_RS19785 (LOE16_19775) | 109029..111488 | + | 2460 | WP_224556981.1 | hypothetical protein | - |
| LOE16_RS19790 (LOE16_19780) | 111966..112556 | + | 591 | WP_229939111.1 | NAD(P)H-dependent oxidoreductase | - |
| LOE16_RS19795 (LOE16_19785) | 113273..114157 | + | 885 | WP_224556983.1 | DUF1403 family protein | - |
| LOE16_RS19800 (LOE16_19790) | 114160..114774 | + | 615 | WP_224556984.1 | SMC-Scp complex subunit ScpB | - |
| LOE16_RS19805 (LOE16_19795) | 114875..115090 | + | 216 | WP_224556986.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | - |
| LOE16_RS19810 (LOE16_19800) | 115117..115620 | + | 504 | WP_224556988.1 | type II toxin-antitoxin system VapC family toxin | - |
| LOE16_RS19815 (LOE16_19805) | 115514..116226 | + | 713 | Protein_112 | IS6 family transposase | - |
| LOE16_RS19820 (LOE16_19810) | 116512..116685 | - | 174 | WP_229939113.1 | DDE-type integrase/transposase/recombinase | - |
| LOE16_RS19825 (LOE16_19815) | 118460..118849 | - | 390 | WP_224556990.1 | helix-turn-helix domain-containing protein | - |
| LOE16_RS19830 (LOE16_19820) | 119270..119374 | + | 105 | WP_229939115.1 | hypothetical protein | - |
| LOE16_RS19835 (LOE16_19825) | 119484..119786 | - | 303 | WP_224556991.1 | hypothetical protein | - |
| LOE16_RS19840 (LOE16_19830) | 119901..120785 | + | 885 | WP_224556992.1 | DUF1403 family protein | - |
| LOE16_RS19845 (LOE16_19835) | 120788..121381 | + | 594 | WP_224556993.1 | SMC-Scp complex subunit ScpB | - |
| LOE16_RS19850 (LOE16_19840) | 121667..121945 | + | 279 | WP_229939064.1 | transposase | - |
| LOE16_RS19855 (LOE16_19845) | 121942..122289 | + | 348 | WP_224558021.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| LOE16_RS19860 (LOE16_19850) | 122368..123894 | + | 1527 | WP_224558022.1 | IS66 family transposase | - |
| LOE16_RS19865 (LOE16_19855) | 124109..124216 | + | 108 | Protein_122 | transposase | - |
| LOE16_RS19870 (LOE16_19860) | 125854..126408 | + | 555 | WP_224558005.1 | hypothetical protein | - |
| LOE16_RS19875 (LOE16_19865) | 126964..127152 | + | 189 | WP_224558006.1 | Flp family type IVb pilin | - |
| LOE16_RS19880 (LOE16_19870) | 127198..128118 | + | 921 | WP_229940643.1 | Flp pilus assembly protein CpaB | - |
| LOE16_RS19885 (LOE16_19875) | 128140..128835 | + | 696 | WP_229938799.1 | pilus assembly protein N-terminal domain-containing protein | - |
| LOE16_RS19890 (LOE16_19880) | 128832..129494 | + | 663 | WP_229940875.1 | hypothetical protein | - |
| LOE16_RS19895 (LOE16_19885) | 129497..130036 | + | 540 | WP_224557980.1 | CpaD family pilus assembly protein | - |
| LOE16_RS19900 (LOE16_19890) | 130058..131299 | + | 1242 | WP_224557981.1 | hypothetical protein | - |
| LOE16_RS19905 (LOE16_19895) | 131292..131579 | + | 288 | WP_229940876.1 | hypothetical protein | - |
| LOE16_RS19910 (LOE16_19900) | 131555..132835 | + | 1281 | WP_229940877.1 | CpaF family protein | - |
| LOE16_RS19915 (LOE16_19905) | 132832..133800 | + | 969 | WP_229940878.1 | type II secretion system F family protein | - |
| LOE16_RS19920 (LOE16_19910) | 133802..134752 | + | 951 | WP_229939089.1 | type II secretion system F family protein | - |
| LOE16_RS19925 (LOE16_19915) | 134749..135171 | + | 423 | WP_224557940.1 | pilus assembly protein | - |
| LOE16_RS19930 (LOE16_19920) | 135161..136936 | + | 1776 | WP_224557939.1 | pilus assembly protein TadG-related protein | - |
| LOE16_RS19935 (LOE16_19925) | 136983..137789 | + | 807 | WP_051539349.1 | tetratricopeptide repeat protein | - |
| LOE16_RS19940 (LOE16_19930) | 138241..138717 | + | 477 | WP_224557938.1 | MarR family transcriptional regulator | - |
| LOE16_RS19945 (LOE16_19935) | 138739..139767 | - | 1029 | WP_224557937.1 | IS30 family transposase | - |
| LOE16_RS19950 (LOE16_19940) | 140050..140784 | - | 735 | WP_224557936.1 | hypothetical protein | - |
| LOE16_RS19955 (LOE16_19945) | 140882..141163 | - | 282 | WP_224557935.1 | hypothetical protein | - |
| LOE16_RS19960 (LOE16_19950) | 141303..142994 | + | 1692 | WP_224557934.1 | hypothetical protein | - |
| LOE16_RS19965 (LOE16_19955) | 143007..144011 | + | 1005 | WP_224557933.1 | alpha/beta hydrolase family protein | - |
| LOE16_RS19970 (LOE16_19960) | 144085..144288 | - | 204 | WP_229939166.1 | hypothetical protein | - |
| LOE16_RS19975 (LOE16_19965) | 144548..144916 | + | 369 | WP_008327368.1 | hypothetical protein | - |
| LOE16_RS19980 (LOE16_19970) | 145175..146077 | - | 903 | Protein_145 | methyltransferase | - |
| LOE16_RS19985 (LOE16_19975) | 146369..147478 | - | 1110 | WP_224558030.1 | IS110 family transposase | - |
| LOE16_RS19990 (LOE16_19980) | 147580..147903 | - | 324 | Protein_147 | methylase | - |
| LOE16_RS19995 (LOE16_19985) | 148040..148435 | - | 396 | WP_224557987.1 | type II toxin-antitoxin system death-on-curing family toxin | - |
| LOE16_RS20000 (LOE16_19990) | 148432..148656 | - | 225 | WP_108693368.1 | transcriptional regulator/antitoxin MazE | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|